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@ModelingOriginsofLife

ModelingOriginsofLife

Repositories

  • C 0 1 0 0 Updated Oct 13, 2016
  • C 0 0 0 0 Updated Sep 27, 2016
  • PlantNet

    Code for PlantNet model: open-ended growth of complexity co-evolutionary forests.

    C 0 0 0 0 Updated Jul 4, 2016
  • C 0 0 0 0 Updated Jun 22, 2016
  • StochasticConstraintMD

    Code which implements Monte-Carlo permutation of hard constraints in a grid-less particle simulation. If the constraint flipping moves obey detailed balance, the coarse-grained dynamics should obey an effective potential which is different than the microscopic hard constraint potentials. Because of this, this method can exactly conserve momentum…

    C++ 0 1 0 0 Updated May 22, 2016
  • LatticeSelfAssembly

    A lattice Monte-Carlo model by Nathaniel Virgo where grid state energies are dependent on the specific neighborhood counts rather than being strictly additive. This implementation has a CUDA and CPU version.

    C++ 0 0 0 0 Updated May 17, 2016
  • IsingVesicles

    A model that produces vesicles of different sizes controlled by the amount of surfactant and oil in the system

    C++ 0 0 0 0 Updated May 17, 2016
  • EvoEvo

    Code for 2 projects from EU-funded EvoEvo project

    C++ 0 0 0 0 Updated Apr 18, 2016
  • Reaction-Network-Builder

    Browser-based software to build, visualize, arrange, and simulate reaction networks. Intended for quickly testing out ideas about small chemical reaction network motifs in real time.

    JavaScript 0 0 0 0 Updated Feb 26, 2016
  • InformationEcology

    Python code to train a population of neural networks on a data set to try to find inter-relations

    Python 0 0 0 0 Updated Feb 23, 2016
  • EvHeredity

    Variations on N Guttenberg's information bottleneck models for evolution of heredity

    C++ 0 0 0 0 Updated Sep 10, 2015
  • pyhchem

    Python version of Tim Hutton's artificial chemistry

    Python 2 2 0 0 Updated Jul 22, 2015
  • Evolutionary-activity

    Evolutionary activity is a visual and statistical approach to analyzing evolutionary processes.

    Python Unlicense 1 0 0 0 Updated Jun 19, 2015
  • SandpileChemistry

    A chemistry of avalanching sand piles suggested by Eric Smith as a way to study reactivity.

    JavaScript 0 0 0 0 Updated Apr 20, 2015
  • Julia 0 0 5 0 Updated Apr 6, 2015
  • LatticeArtificialChemistry

    Chemistry on a 2D grid, with Moore-neighborhood bond lengths.

    C++ MIT 0 1 0 0 Updated Mar 18, 2015
  • Heredity

    Scripts for computing the heredity detection metric on a data set

    Python 0 0 0 0 Updated Dec 26, 2014
  • C GPL-2.0 0 0 0 0 Updated Nov 14, 2014
  • OriginsOfLifeModellingEnvironment

    This is a general computational framework for graphically constructing various Origins of Life models such as generative chemistries, MD-chemistries (such as Tim Hutton's model), cellular automata, etc.

    C++ 0 0 0 0 Updated Oct 15, 2014
  • C++ 0 0 0 0 Updated Aug 13, 2014
  • hchem

    A C++ implementation of Tim Hutton's chemistry

    C++ GPL-2.0 0 0 0 0 Updated Aug 7, 2014
  • HeredityNetworkModels

    Models and metrics for studying heredity and nascent heredity.

    C++ 0 1 0 0 Updated Jul 27, 2014
  • HierarchicalMarkovProcesses

    This is a code that generates and simulates hierarchical Markov models with couplings between the behavior at each level and the transfer matrix at the levels above and below.

    C++ 0 0 0 0 Updated Jul 25, 2014
  • Data-Visualizations

    A repository to store and share visualizations of relevant data not directly attached to particular simulations

    0 0 0 0 Updated May 29, 2014
  • ParticleArtificialChemistry

    A Javascript implementation of Tim Hutton's artificial chemistry model.

    JavaScript MIT 1 4 0 0 Updated May 23, 2014
  • ToyLipidModel

    A 2D matchstick model of lipids, based on repulsive electrostatic forces.

    JavaScript MIT 0 2 0 0 Updated Mar 19, 2014
  • GenerativeChemistry

    This is a well-mixed reactor model of a 'generative' chemistry on strings - that is, the reaction network is generated from stoichiometry and underlying rules (e.g. bond energies, local chemical structure). This type of chemistry effectively self-extends its own reaction network at need.

    JavaScript MIT 0 0 0 0 Updated Mar 18, 2014
  • MATLAB 0 0 0 0 Updated Mar 14, 2014
  • March2014WhitePaper

    A place to find the wiki for the White Paper collaboration proposed at the March 11 2014 workshop at IAS.

    0 1 0 0 Updated Mar 12, 2014
  • TeX 1 0 0 0 Updated Mar 9, 2014

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