High-throughput Image Processing of Plant Organs
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
P1000363.JPG
P1000941.JPG
P1010073.JPG
P1010084.JPG
README.md
RUNEVERYTHING.sh
countgreen_child.py
countgreen_master.py
create_index_qp_images.py
index_pots_pertray.tsv
module_image_processing.py
moi.py

README.md

HIPPO: High-throughput Image Processing of Plant Organs

Moises Exposito-Alonso

moisesexpositoalonso@gmail.com

This repo contains python functions and wrappers for analyses of plant images. It heavily uses the modules Image, Subprocess and Open Computer Vision (OpenCV).

To run example segmentations

git clone https://github.com/MoisesExpositoAlonso/hippo

python countgreen_master.py

This both segments the four example JPG pictures and stores the pixel counts in a spreadsheet.