@MullinsLab

Mullins Lab

Mullins Lab at the University of Washington

Pinned repositories

  1. ISDB

    A toolkit for creating databases of viral integration sites in host genomes

    Perl 2

  2. Methylation-Station

    An application for analyzing and visualizing DNA methylation in multiple sequence alignments

    JavaScript

  3. App-RecordStream-Bio

    A collection of record-handling tools related to biology

    Perl 1 1

  • Perl 1 Updated Jun 1, 2018
  • A toolkit for creating databases of viral integration sites in host genomes

    Perl 2 Updated May 30, 2018
  • An application for analyzing and visualizing DNA methylation in multiple sequence alignments

    JavaScript Updated May 29, 2018
  • Build recs pipelines in Perl instead of shell

    Perl 1 Updated May 29, 2018
  • Quickly generate PDFs for printing cryo-safe labels

    Perl Updated May 24, 2018
  • Determine an R script's filename from within the script itself

    R 1 Updated Apr 9, 2018
  • A collection of record-handling tools related to biology

    Perl 1 1 Updated Mar 30, 2018
  • PostgreSQL Foreign Data Wrapper (FDW) definition generator

    Perl 1 Updated Mar 27, 2018
  • A generic component for maintaining the sort state of a set of sortable fields, e.g. table columns.

    JavaScript Updated Mar 22, 2018
  • A bridge between File objects and your AngularJS components

    Updated Mar 14, 2018
  • A minimal file upload widget wrapping standard file inputs with drag-and-drop behaviour

    JavaScript Updated Mar 10, 2018
  • Geneious runner for plugin developers

    Ruby Updated Feb 28, 2018
  • Generate a simple consensus using % identity thresholds and minimum coverage from a SAM/BAM file, treating each read group (RG) separately.

    Python 1 Updated Jan 24, 2018
  • Quickly align two sequences for ad-hoc comparison by a variety of methods (BLAST, needle, muscle, etc)

    Shell Updated Oct 12, 2017
  • A Catalyst view for pre-processing Vega specs

    Perl 2 Updated Apr 6, 2017
  • Turn your Pandoc documents into self-rendering HTML documents! Why? Because it's a cute trick for public HTML dirs! ;-)

    C Updated Apr 5, 2017
  • Locate sequences within HIV using LANL's web tool via a JSON web API or Perl library

    Perl Updated Mar 24, 2017
  • ViroBLAST standalone package

    Perl 2 1 Updated Jan 9, 2017
  • HIV-1 Reservoirs Integration Sites

    Updated Oct 11, 2016
  • A tiny BLAST web service API

    Perl Updated Oct 10, 2016
  • Concise response constructors for Catalyst controllers

    Perl 1 Updated Sep 14, 2016
  • Make Your Company Data Driven. Connect to any data source, easily visualize and share your data.

    Python 1,526 BSD-2-Clause Updated Jul 6, 2016
  • Python 32 Updated May 26, 2016
  • An external CSV data connection for Excel

    Makefile Updated Aug 12, 2015
  • A tool to summarize the NGS read count stats at each stage of a pipeline

    Perl Updated Jul 27, 2015
  • FastQ input/output commands for the App::RecordStream (recs) system

    Python Updated Jul 23, 2015
  • A quick Phred+33 quality score explainer

    HTML Updated Jun 4, 2015
  • Indel and carry-forward error corrections for next-generation sequencing data

    Perl Updated Mar 20, 2015
  • An exercise in naively trimming primers (with mismatches allowed) from the 5' end of fastq reads. Using cutadapt would be a better production pipeline solution: http://cutadapt.readthedocs.io/en/stable/

    Python Updated Mar 17, 2015
  • Naively recombine input sequences at specified breakpoints

    Perl Updated Mar 9, 2015