From 91f6a1c6ec70bfaea13143fd7c210ef023a2dfa5 Mon Sep 17 00:00:00 2001
From: Henry Webel <heweb@dtu.dk>
Date: Thu, 30 Jan 2025 16:09:04 +0100
Subject: [PATCH 1/3] :art: add dynamic versioning of python pkg

---
 pyproject.toml | 18 ++++++++++++++----
 1 file changed, 14 insertions(+), 4 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 91f93b3..60f6103 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,11 +1,14 @@
-[tool.poetry]
+[project]
 name = "vuegen"
-version = "0.1.0"
+dynamic = ["version"]
+
+[tool.poetry]
 description = "Module to generate automatic web interface reports with visualizations"
 authors = ["MoNA group"]
 license = "MIT"
 readme = "README.md"
 repository = "https://github.com/Multiomics-Analytics-Group/vuegen"
+version = "0.1.0"
 
 [tool.poetry.dependencies]
 python = ">=3.9,<3.9.7 || >3.9.7,<4.0"
@@ -39,9 +42,16 @@ quarto-cli = "*"
 [tool.poetry.group.dev.dependencies]
 ipykernel = {version="^6.29.5", optional=true}
 
+[tool.poetry.requires-plugins]
+poetry-dynamic-versioning = { version = ">=1.0.0,<2.0.0", extras = ["plugin"] }
+
+ 
+[tool.poetry-dynamic-versioning]
+enable = true
+
 [build-system]
-requires = ["poetry-core"]
-build-backend = "poetry.core.masonry.api"
+requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.0.0,<2.0.0"]
+build-backend = "poetry_dynamic_versioning.backend"
 
 # https://stackoverflow.com/a/60990574/9684872
 [tool.poetry.extras]

From 24646c2627c0ba33b56c67dee51128c099347656 Mon Sep 17 00:00:00 2001
From: Henry Webel <heweb@dtu.dk>
Date: Thu, 30 Jan 2025 17:17:25 +0100
Subject: [PATCH 2/3] :zap: do not save docs

---
 .github/workflows/docs.yml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index 7ff7221..a06a658 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -35,8 +35,8 @@ jobs:
         run: |
             cd docs
             sphinx-build -n --keep-going -b html ./ ./_build/
-      - name: save artifacts
-        uses: actions/upload-artifact@v4
-        with:
-          name: Sphinx_${{ matrix.python-version }}
-          path: docs/_build/
+      # - name: save artifacts
+      #   uses: actions/upload-artifact@v4
+      #   with:
+      #     name: Sphinx_${{ matrix.python-version }}
+      #     path: docs/_build/

From e8f9908edcd6cae45714e9926b23248070efc92a Mon Sep 17 00:00:00 2001
From: Henry Webel <heweb@dtu.dk>
Date: Fri, 31 Jan 2025 13:48:25 +0100
Subject: [PATCH 3/3] :zap: automate publishing of Python package

---
 .github/workflows/cdci.yml | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/.github/workflows/cdci.yml b/.github/workflows/cdci.yml
index 4731261..9fd742c 100644
--- a/.github/workflows/cdci.yml
+++ b/.github/workflows/cdci.yml
@@ -95,3 +95,26 @@ jobs:
           cd docs
           vuegen -dir example_data/Earth_microbiome_vuegen_demo_notebook -rt jupyter
           vuegen -c example_data/Earth_microbiome_vuegen_demo_notebook/Earth_microbiome_vuegen_demo_notebook_config.yaml -rt jupyter
+
+  publish:
+    name: Publish package to PyPI
+    if: startsWith(github.ref, 'refs/tags')
+    permissions:
+      id-token: write
+    needs:
+      - test
+      - other-reports
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+  
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+      - name: Install twine and build
+        run: python -m pip install --upgrade twine build
+      - name: Build
+        run: python -m build
+      - name: Publish package distributions to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1