From 09bdb43b6a7143939037ab57f290aa20fa6888c7 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Linus=20=C3=96stberg?= Date: Thu, 15 Aug 2019 13:11:57 +0200 Subject: [PATCH] Disable fixme warning in raw_data_importer. --- scripts/importer/data_importer/raw_data_importer.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/importer/data_importer/raw_data_importer.py b/scripts/importer/data_importer/raw_data_importer.py index 351ddaff3..1451f8096 100644 --- a/scripts/importer/data_importer/raw_data_importer.py +++ b/scripts/importer/data_importer/raw_data_importer.py @@ -234,7 +234,7 @@ def _parse_manta(self): # pylint: disable=too-many-locals,too-many-branches,too re.search(r'(.+)[[\]](.*?):(\d+)[[\]]', alt).groups() if data['mate_chrom'].startswith('GL') or data['mate_chrom'].startswith('MT'): # A BND from a chromosome to GL or MT. - # TODO ask a bioinformatician if these cases should be included or not + # TODO ask a bioinformatician if these cases should be included or not # pylint: disable=fixme continue data['mate_id'] = info.get('MATEID', '') data['variant_id'] = '{}-{}-{}-{}'.format(data['chrom'],