From f2a569f2b9c982440814361b992392811f9d6f75 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Linus=20=C3=96stberg?= Date: Thu, 25 Apr 2019 08:59:14 +0200 Subject: [PATCH] dataset_version in where --- scripts/importer/data_importer/raw_data_importer.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/scripts/importer/data_importer/raw_data_importer.py b/scripts/importer/data_importer/raw_data_importer.py index 1f8d07393..5d3115f65 100644 --- a/scripts/importer/data_importer/raw_data_importer.py +++ b/scripts/importer/data_importer/raw_data_importer.py @@ -264,7 +264,8 @@ def _insert_variants(self): if fmt_alleles != fmt_alleles2: query = db.Variant.update(orig_alt_alleles=fmt_alleles2).where((db.Variant.chrom==base['chrom']) & (db.Variant.pos==base['pos']) & - (db.Variant.ref==base['ref'])) + (db.Variant.ref==base['ref']) & + (db.Variant.ref==base['dataset_version'])) query.execute() for i, alt in enumerate(alt_alleles):