@NCBI-Hackathons

NCBI-Hackathons

Repositories from and Upcoming NCBI-Hackathons

  • Programs to quantify expression of transcripts from public datasets

    MIT Updated Jul 16, 2018
  • NovoGraph: building whole genome graphs from long-read-based de novo assemblies

    Perl 12 MIT Updated Jul 16, 2018
  • An Automated Pipeline to Classify Gene Families based on Protein Domain Organization using Auxin Response Factors in Legumes as an Example

    R 1 1 MIT Updated Jul 16, 2018
  • Subclassification of disease states based on the intersection of literature and expression

    Python 2 MIT Updated Jul 14, 2018
  • Detection of Structural Variants that Affect Likelihood of Sepsis

    R 1 2 MIT Updated Jul 13, 2018
  • Endogenous Retrovirus Response to Cancer

    Shell 1 MIT Updated Jul 13, 2018
  • A pipeline to support biological assertions with evolutionary information

    R 1 MIT Updated Jul 13, 2018
  • Creates plant genome graphs for easy marker detection!

    Shell 3 MIT Updated Jul 13, 2018
  • A python toolkit for the predictive analysis of infection-prone microbiome pathways

    Jupyter Notebook MIT Updated Jul 13, 2018
  • Segmentation Analysis from Multi-Resolution Imaging

    MIT Updated Jul 10, 2018
  • A viewer that streams transcript count for bulk RNAseq, miRNA and scRNA seq from public datasets

    MIT Updated Jul 9, 2018
  • Devante Thompson's big bag of awesome pipelines

    Jupyter Notebook 2 MIT Updated Jul 9, 2018
  • An Automatic Bioinformatics Pipeline Design Engine

    1 MIT Updated Jul 8, 2018
  • A computational pipeline to find Human Endogenous Retroviruses in RNA Seq Data

    Jupyter Notebook 1 3 MIT Updated Jul 1, 2018
  • A Monte Carlo Approach for Estimating Diffusion Coefficients

    JavaScript 2 1 MIT Updated Jun 30, 2018
  • An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter

    Jupyter Notebook 4 6 MIT Updated Jun 29, 2018
  • R Package to infer cell types in scRNA-seq data sets

    R 8 6 MIT Updated Jun 28, 2018
  • A detection algorithm for expression features that correspond to previous viral infection

    Shell 3 4 MIT Updated Jun 27, 2018
  • A machine learning approach to detect micropeptides from noncoding RNAs

    Python 4 2 MIT Updated Jun 25, 2018
  • Find hot data sets in your area (of research)!

    Jupyter Notebook 4 2 MIT Updated Jun 23, 2018
  • Containers and Workflows Workshop at RMGHC 2018

    1 MIT Updated Jun 20, 2018
  • 59 23 MIT Updated Jun 19, 2018
  • NCBI Hackathon Repos

    HTML 9 8 Updated Jun 19, 2018
  • Jupyter Notebook MIT Updated Jun 13, 2018
  • Polygenic SNP Search Tool

    Python 4 8 MIT Updated Jun 10, 2018
  • A Simple pipeline to use to predict metagenome medication interaction

    1 MIT Updated May 31, 2018
  • Characterization of a Unique Protein's overt functions with Taxonomy Enriched Automation

    Shell 1 MIT Updated May 31, 2018
  • Using MetaMapLite to standardize metadata terminology and make sequencing metadata machine readable!

    JavaScript 1 MIT Updated May 30, 2018
  • A Pipeline to Compare Concepts in Funded Grants, BioProjects, and BioSamples

    Python MIT Updated May 29, 2018
  • Discovery of Novel Endogenous Viruses

    Python 5 5 MIT Updated May 18, 2018
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