@NCBI-Hackathons

NCBI-Hackathons

Repositories from and Upcoming NCBI-Hackathons

  • Discovery of Novel Endogenous Viruses

    Python 5 5 MIT Updated Nov 20, 2018
  • We aim to develop an assay that can differentiate between melanoma cells with high vs. low metastatic potential properties.

    Java 2 1 MIT Updated Nov 19, 2018
  • Self-guided educational workshop for ChIP-Seq and RNA-Seq

    HTML 1 1 MIT Updated Nov 19, 2018
  • HTML 5 1 MIT Updated Nov 19, 2018
  • The project centers on the development and application of machine learning for the analysis of medical imaging data to automate the analysis and feature extraction, diagnosis or prognosis.

    Python MIT Updated Nov 16, 2018
  • A virtual reality environment for physically assembling deep learning models to solve data science problems.

    C# 6 MIT Updated Nov 14, 2018
  • R package specialized in HLA typing clustering and visualization based on specific similarity metrics.

    R 2 5 MIT Updated Nov 12, 2018
  • Jupyter Notebook 2 2 MIT Updated Nov 12, 2018
  • Disease prediction based on transcriptomics clustering

    HTML 3 3 MIT Updated Nov 12, 2018
  • Jupyter Notebook MIT Updated Nov 12, 2018
  • The fastest gigascale image annotation system in the world!

    JavaScript 3 2 MIT Updated Nov 11, 2018
  • Developing an unbiased computational strategy to identify distinct populations that presumably represent neurons, glia, debris, and ambient RNA.

    Jupyter Notebook 1 MIT Updated Nov 10, 2018
  • The focus of this project is to develop a machine learning algorithm using the plasma lipid data provided to provide staging for a patient’s liver disease diagnosis.

    Jupyter Notebook 1 MIT Updated Nov 10, 2018
  • Our goal is to develop a machine learning prediction algorithm for neurological injury in pediatric cardiac patients.

    Jupyter Notebook 1 1 MIT Updated Nov 10, 2018
  • The goal of this project is to re-write and optimize the simulation code to run on a GPU instead of a CPU in order to speed up simulations of molecular interactions.

    C++ 1 MIT Updated Nov 10, 2018
  • Simulate the binding of drugs to targets by identifying the shape and location of regions that may be stabilized through binding of targeted molecules, and correlate with structural changes in the protein active site or lack of drug binding stabilization.

    Matlab MIT Updated Nov 10, 2018
  • To develop visual dashboards patient population data and predictive analytics for quick, efficient risk stratification of individual patients in a clinical setting.

    Python 1 MIT Updated Nov 10, 2018
  • Machine learning to distinguish two types of T-cell receptor subregions.

    Python 3 3 MIT Updated Nov 10, 2018
  • The goal of this project is use natural language processing to extract exclusion and inclusion criteria from free form text fields to match patients with clinical trials.

    Shell 1 1 MIT Updated Nov 10, 2018
  • Subclassification of disease states based on the intersection of literature and expression

    Python 8 1 MIT Updated Nov 10, 2018
  • An Automated Pipeline to Classify Gene Families based on Protein Domain Organization using Auxin Response Factors in Legumes as an Example

    R 1 1 MIT Updated Nov 3, 2018
  • Novel Discovery of Phages from Salmonella Sequences

    Jupyter Notebook 1 MIT Updated Oct 24, 2018
  • A semi-curated list of enhancer and promoter databases. If you know of others, please put them in issues!

    1 MIT Updated Oct 24, 2018
  • Classify web visitor queries so you can chart, and respond to, trends in information seeking

    JavaScript 3 1 MIT Updated Oct 20, 2018
  • Programs to quantify expression of transcripts from public datasets

    R 5 MIT Updated Oct 18, 2018
  • A test of the git based manuscript generator manubot for the ncbi-hackathons program

    1 MIT Updated Oct 12, 2018
  • Software, architecture, and data index design for the 2018/2019 Virus Discovery Project

    MIT Updated Oct 9, 2018
  • R 19 12 CC0-1.0 Updated Oct 5, 2018
  • Imaging, Machine Learning, Workflow

    Python 2 MIT Updated Oct 2, 2018
  • NovoGraph: building whole genome graphs from long-read-based de novo assemblies

    Perl 20 1 MIT Updated Oct 1, 2018

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