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2D/3D molecular interaction networks visualization


2D molecular network diagrams are created from protein 3D structures to represent, select and visualize molecular interactions in both 3D and 2D simultaneously, using cytoscape.js . 2D windows appear side by side with a 3D window (iCn3D) under a web browser

Tools depending on

We added a 2D viewer (molecular network) as a window/widget within iCn3D. iCn3D itself is accessible from GitHub at


  • Qiangling (Leon) Li
  • Spencer Bliven
  • Eli Draizen
  • Jose Duarte
  • Keiichiro Oto
  • Tim Schaefer
  • Jiyao Wang
  • Philippe Youkharibache