From f5819655746555da4f2d41bda122dea729b236e2 Mon Sep 17 00:00:00 2001
From: mobb <mob@msi.ucsb.edu>
Date: Mon, 29 Oct 2018 15:18:58 -0700
Subject: [PATCH] updated namespace at top level. noticed that some test files
 have stmml namespace in additional metadata also. to do

---
 style/eml211to220.xsl | 185 ++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 185 insertions(+)
 create mode 100644 style/eml211to220.xsl

diff --git a/style/eml211to220.xsl b/style/eml211to220.xsl
new file mode 100644
index 00000000..ba1cba51
--- /dev/null
+++ b/style/eml211to220.xsl
@@ -0,0 +1,185 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
+  xmlns:eml="eml://ecoinformatics.org/eml-2.2.0" version="1.0">
+  <xsl:output method="xml" encoding="UTF-8" indent="yes"/>
+  <!--<xsl:strip-space elements="*"></xsl:strip-space>-->
+  <xsl:param name="package-id" select="'newID'"/>
+
+  <xsl:template match="/*">
+    <!--handle top level element-->
+    <xsl:element name="eml:eml">
+      <xsl:for-each select="@*">
+        <xsl:choose>
+          <xsl:when test="namespace-uri() = 'http://www.w3.org/2001/XMLSchema-instance'">
+            <xsl:attribute name="xsi:{local-name()}" namespace="{namespace-uri()}">
+              <xsl:variable name="value" select="."/>
+              <xsl:choose>
+                <!--change eml210 to eml211 in attribute-->
+                <xsl:when test="contains($value, &quot;eml://ecoinformatics.org/eml-2.1.1&quot;)">
+                  <xsl:variable name="first-replace">
+                    <xsl:call-template name="replace-string">
+                      <xsl:with-param name="text" select="$value"/>
+                      <xsl:with-param name="replace" select="'eml://ecoinformatics.org/eml-2.1.1'"/>
+                      <xsl:with-param name="with" select="'eml://ecoinformatics.org/eml-2.2.0'"/>
+                    </xsl:call-template>
+                  </xsl:variable>
+                  <xsl:variable name="second-replace">
+                    <xsl:call-template name="replace-string">
+                      <xsl:with-param name="text" select="$first-replace"/>
+                      <xsl:with-param name="replace" select="'http://www.xml-cml.org/schema/stmml-1.1'"/>
+                      <xsl:with-param name="with" select="'http://www.xml-cml.org/schema/stmml-1.2'"
+                      />
+                    </xsl:call-template>
+                  </xsl:variable>
+                  <xsl:value-of select="$second-replace"/>
+                </xsl:when>
+                <!--change eml210 to eml211 in attribute-->
+                <xsl:when test="contains($value, 'eml://ecoinformatics.org/eml-2.1.1')">
+                  <xsl:variable name="first-replace">
+                    <xsl:call-template name="replace-string">
+                      <xsl:with-param name="text" select="$value"/>
+                      <xsl:with-param name="replace" select="'eml://ecoinformatics.org/eml-2.1.1'"/>
+                      <xsl:with-param name="with" select="'eml://ecoinformatics.org/eml-2.2.0'"/>
+                    </xsl:call-template>
+                  </xsl:variable>
+                  <xsl:variable name="second-replace">
+                    <xsl:call-template name="replace-string">
+                      <xsl:with-param name="text" select="$first-replace"/>
+                      <xsl:with-param name="replace" select="'http://www.xml-cml.org/schema/stmml-1.1'"/>
+                      <xsl:with-param name="with" select="'http://www.xml-cml.org/schema/stmml-1.2'"
+                      />
+                    </xsl:call-template>
+                  </xsl:variable>
+                  <xsl:value-of select="$second-replace"/>
+                </xsl:when>
+                <xsl:otherwise>
+                  <xsl:value-of select="."/>
+                </xsl:otherwise>
+              </xsl:choose>
+            </xsl:attribute>
+          </xsl:when>
+          <xsl:otherwise>
+            <xsl:choose>
+              <xsl:when test="name() = 'packageId'">
+                <!-- handle package id: if there is no given packageid, it will use the old one. Otherwise, using the given id-->
+                <xsl:attribute name="{name()}" namespace="{namespace-uri()}">
+                  <xsl:choose>
+                    <xsl:when test="$package-id = 'newID'">
+                      <xsl:value-of select="."/>
+                    </xsl:when>
+                    <xsl:otherwise>
+                      <xsl:value-of select="$package-id"/>
+                    </xsl:otherwise>
+                  </xsl:choose>
+                </xsl:attribute>
+              </xsl:when>
+              <xsl:otherwise>
+                <xsl:attribute name="{name()}" namespace="{namespace-uri()}">
+                  <xsl:value-of select="."/>
+                </xsl:attribute>
+              </xsl:otherwise>
+            </xsl:choose>
+          </xsl:otherwise>
+        </xsl:choose>
+      </xsl:for-each>
+
+      <xsl:for-each select="/*/*">
+        <xsl:choose>
+          <xsl:when test="name() = 'access'">
+            <xsl:element name="{name(.)}" namespace="{namespace-uri(.)}">
+              <xsl:copy-of select="@*"/>
+              <xsl:apply-templates mode="handle-elements-under-main-module" select="."/>
+            </xsl:element>
+          </xsl:when>
+
+          <xsl:when test="name() = 'dataset'">
+            <xsl:element name="{name(.)}" namespace="{namespace-uri(.)}">
+              <xsl:copy-of select="@*"/>
+              <xsl:apply-templates mode="handle-elements-under-main-module" select="."/>
+            </xsl:element>
+          </xsl:when>
+
+          <xsl:when test="name() = 'citation'">
+            <xsl:element name="{name(.)}" namespace="{namespace-uri(.)}">
+              <xsl:copy-of select="@*"/>
+              <xsl:apply-templates mode="handle-elements-under-main-module" select="."/>
+            </xsl:element>
+          </xsl:when>
+
+          <xsl:when test="name() = 'software'">
+            <xsl:element name="{name(.)}" namespace="{namespace-uri(.)}">
+              <xsl:copy-of select="@*"/>
+              <xsl:apply-templates mode="handle-elements-under-main-module" select="."/>
+            </xsl:element>
+          </xsl:when>
+
+          <xsl:when test="name() = 'protocol'">
+            <xsl:element name="{name(.)}" namespace="{namespace-uri(.)}">
+              <xsl:copy-of select="@*"/>
+              <xsl:apply-templates mode="handle-elements-under-main-module" select="."/>
+            </xsl:element>
+          </xsl:when>
+
+          <xsl:when test="name() = 'additionalMetadata'">
+            <xsl:element name="{name(.)}" namespace="{namespace-uri(.)}">
+              
+              <xsl:copy-of select="@*"/>
+              <xsl:apply-templates mode="handle-elements-under-main-module" select="."/>
+            </xsl:element>
+          </xsl:when>
+
+        </xsl:choose>
+      </xsl:for-each>
+    </xsl:element>
+    <!--  
+	 <xsl:message terminate="no">
+		 <xsl:call-template name="output_message4_warn"/>
+	  </xsl:message>
+	  -->
+  </xsl:template>
+
+  <!-- handle make changes under main module (dataset, citation, protocol and software) -->
+  <xsl:template mode="handle-elements-under-main-module" match="*">
+    <xsl:for-each select="./*">
+      <xsl:apply-templates select="."/>
+    </xsl:for-each>
+  </xsl:template>
+
+  <!-- main template which will copy nodes recursively-->
+  <xsl:template match="*">
+    <xsl:element name="{name(.)}" namespace="{namespace-uri(.)}">
+      <xsl:copy-of select="@*"/>
+      <xsl:apply-templates/>
+    </xsl:element>
+  </xsl:template>
+
+  <!--Template to replace string "replace" by string "with" in given string "text"-->
+  <xsl:template name="replace-string">
+    <xsl:param name="text"/>
+    <xsl:param name="replace"/>
+    <xsl:param name="with"/>
+    <xsl:choose>
+      <xsl:when test="contains($text, $replace)">
+        <xsl:value-of select="substring-before($text, $replace)"/>
+        <xsl:value-of select="$with"/>
+        <xsl:call-template name="replace-string">
+          <xsl:with-param name="text" select="substring-after($text, $replace)"/>
+          <xsl:with-param name="replace" select="$replace"/>
+          <xsl:with-param name="with" select="$with"/>
+        </xsl:call-template>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:value-of select="$text"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:template>
+
+  <!-- get full path of given element-->
+  <xsl:template match="node()" mode="get-full-path">
+    <xsl:for-each select="ancestor-or-self::*">
+      <xsl:text>/</xsl:text>
+      <xsl:value-of select="name()"/>
+    </xsl:for-each>
+  </xsl:template>
+
+</xsl:stylesheet>