National Cancer Informatics Program

JavaScript 12 9


Official repository for GDC User Guides in Markdown format

Updated Oct 25, 2016

JavaScript 1 3


Files needed for Galaxy tools used to run Trinity_CTAT workflows.

Updated Oct 24, 2016

Python 4 4


Updated Oct 21, 2016

Java 1 3


diff specific for CDISC reports

Updated Oct 18, 2016


The National Biomedical Imaging Archive (NBIA) is a free and open source service and software application that enables users to securely store, search, and download diagnostic medical images, providing a searchable national repository integrating in vivo cancer images with clinical and genomic data. Using role-based security, NBIA provides web-b…

Updated Sep 23, 2016

Java 0 4


A remote (RMI) access wrapper around LexEVS.

Updated Sep 7, 2016

Logos 5 7


The LexEVS Terminology Service.

Updated Sep 7, 2016

Java 4 4


A CTS2 Framework Service Plugin based on LexEVS

Updated Sep 1, 2016

Groovy 1 0


Generic version of the CDR, updated to remove study-specific references

Updated Aug 25, 2016


Alview : Alignment View for BAM files - a fast,portable tool for viewing short reads as native GUI program, command line or via webserver

Updated Jul 8, 2016

Java 0 4


The NCI Term Browser is a web-based browser that allows users to search all terminologies, value sets and mappings on the LexEVS terminology server, to browse individual sources, and to easily follow the many links that connect them.

Updated May 5, 2016

Python 0 7


forked from slncky/slncky

slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA orthologs, and characterizes conserved lncRNA evolution.

Updated Apr 19, 2016


Annotation and Image Markup (AIM) is the first project to propose and create a standard means of adding information and knowledge to an image in a clinical environment, so that image content can be easily and automatically searched.

Updated Mar 10, 2016

Java 1 2


The caGrid2 project includes enhancements to the caGrid core services to support WS* and SHA2, which enables the National Cancer Informatics Platform's interoperability strategy.

Updated Mar 9, 2016

JavaScript 3 5


The caCORE Software Development Kit (SDK) generates a system built on the principles of Model Driven Architecture (MDA), n-tier architecture and a common API for data access. When the caCORE SDK-generated system is combined with controlled vocabularies and registered metadata, the resulting software system, called "caCORE-like" system, is "seman…

Updated Mar 9, 2016

Perl 4 6


The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and cellular processes assembled into signaling pathways.

Updated Jan 11, 2016

Java 0 2


The NCI EVS Report Writer is a web-based tool that allows users to generate reports from terminologies available through the LexEVS terminology server; it supports download and printing to a variety of file types and formats.

Updated Dec 22, 2015

Java 0 3


The NCI Term Suggestion application is used both standalone and in the EVS terminology browsers to get community feedback and contributions to both NCI and EVS partner terminology products.

Updated Nov 24, 2015

Java 1 5


The NCI Metathesaurus (NCIm) Browser is a web-based terminology browser that allows users to browse and search the NCI Metathesaurus, a biomedical terminology database that maps terms from more than 70 terminology sources into some 1.5 million biomedical concepts.

Updated Nov 23, 2015