Vignettes for Population Genetics in R
Multivariate vIsualisatioN and OuTlier Analysis Using R
The iEvoBio website. This is mostly an archive of past websites, but can also be used for future websites.
Supplementary data for "Community and Code: Nine Lessons from Nine NESCent Hackathons"
Hackathon guidance from NESCent's Hackathons, Interoperability, Phylogenies working group.
D-PLACE: Database of Phylogenies of Languages for the study of Cultural Evolution
Dockerfile(s) for population genetics
Tracking reuse of 1,000 publicly available scientific datasets across 10 repositories. Work in progress!
Trait Database using Rails 4
An initial implementation of the search functionality described in the PhyloWS standard for accessing phylogenetic information. A 2009 Google Summer of Code project.
Feeding Experiments End-user Database (FEED)
Public site for NESCent digital asset archival
Ontologies for Evolutionary Biology course held in 2012
Ontologies for Evolutionary Biology course held in 2013
Tool for asserting transitive closure axioms, used by the FEED project.
Population Genetics Hackathon, to be held at NESCent on March 16-20, 2015
GMOD Tools for Evolutionary Biology Hackathon
Scripts for digitization and curation of the Park Notebooks
JSON/REST API for FossilCalibrations
The codebase for the Maximum Bodysize Evolution Database developed by the Working Group "Phanerozoic body size trends in time and space: macroevolution and macroecology"
Database schema and web-application for natural diversity of phenotypes and genotypes collected for the neotropical Heliconius butterflies
Fossil calibrations database
Primate Life Histories Database Codebase
Command Line Interface to a Topological Query Application for BioSQL - A 2007 Google Summer of Code project
Automatically exported from code.google.com/p/dbhack1
Design and implementation of methods to estimate speciation and extinction rates that may depend on a character state.
Phylogenetic tree rendering as a web-service. Demonstration project for the EvoGenomics WG at NESCent.
Code for the Plant Mating Systems Evolution Database
A Django web app over an RDF phylogeny database supporting tree annotation and querying.
models of trait macroevolution on trees. R code.