diff --git a/assignments/C-Day3/ex1/file3.cpp b/assignments/C-Day3/ex1/file3.cpp new file mode 100644 index 0000000..c3f7e58 --- /dev/null +++ b/assignments/C-Day3/ex1/file3.cpp @@ -0,0 +1,61 @@ + +// program to read values from a file, each file a csv list of int and two double +// written: fmk + +#include +#include + +int main(int argc, char **argv) { + + if (argc != 3) { + fprintf(stdout, "ERROR correct usage appName inputFile outputBinaryFile\n"); + return -1; + } + + // + // read from ascii file + // + FILE *filePtr = fopen(argv[1],"r"); + + int i = 0; + float float1, float2; + int maxVectorSize = 100; + double *vector1 = (double *)malloc(maxVectorSize*sizeof(double)); + double *vector2 = (double *)malloc(maxVectorSize*sizeof(double)); + int vectorSize = 0; + + while (fscanf(filePtr,"%d, %f, %f\n", &i, &float1, &float2) != EOF) { + vector1[vectorSize] = float1; + vector2[vectorSize] = float2; + printf("%d, %f, %f\n",i, vector2[i], vector1[i]); + vectorSize++; + + if (vectorSize == maxVectorSize) { + + // create new arrys & copy contents + double *newVector1 = (double *)malloc(2*vectorSize*sizeof(double)); + double *newVector2 = (double *)malloc(2*vectorSize*sizeof(double)); + for (int i=0; i`_ can be found on github. The contents of that file is presented here: +The solution `pi.c' is in the solitions/C-Day1/pi folder. The contents of that file is presented here: .. literalinclude:: ./assignments/c4/pi.c :language: c @@ -39,9 +39,9 @@ The solution `pi.c Welcome to the NHERI-SimCenter 2023 Programming BootcampProblem 2: Using structures
  • Problem 3: Writing data for use by other programs: CSV
  • Problem 4: Writing to a binary file
    • -
  • Problem 5: Reading From a binary file and Memory Allocation
    • +
  • Problem 5: Reading From a CSV file, Memory Allocation & Writing to Binary
  • C: Assignments Day 3
    • -
  • C: Assignments Day 4
      -
    • Problem 1: Parallelize using MPI
      • -
    • Problem 2: Parallelize using OpenMP
      • +
    • C: Assignments Day 4
    • C: Assignments Day 5
        +
      • Problem 1: Parallelize using OpenMP
        • +
      • Problem 2: Additional Exercise JUST for Frank
      • Step 1: Setting Up an Execution System
      • Step 2: Exploring File System Commands
      • Step 3: Build a Tapis app
        • @@ -345,6 +347,8 @@

        Welcome to the NHERI-SimCenter 2023 Programming BootcampTapis CLI
        • C: Assignments Day 5
            +
          • Problem 1: Parallelize using OpenMP
            • +
          • Problem 2: Additional Exercise JUST for Frank
          • Step 1: Setting Up an Execution System
          • Step 2: Exploring File System Commands
          • Step 3: Build a Tapis app
            • diff --git a/docs/searchindex.js b/docs/searchindex.js index 203e186..609657f 100644 --- a/docs/searchindex.js +++ b/docs/searchindex.js @@ -1 +1 @@ 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to the NHERI-SimCenter 2023 Programming Bootcamp","<no title>","Graphical User Interface (GUI) Programming","TACC-Frontera","C: Assignment to Test Setup","C: Assignments Day 1","C: Assignments Day 2","C: Day 2 In Class Exercises","C: Assignments Day 3","C: Assignments Day 4","C: Assignments Day 4","C: Assignments Day 5","Python: Assignments Day 1","Python: Assignments Day 2","Python: Assignments Day 3","Python: Assignments Day 4","Python: Assignments Day 5","Assignments","Cmake","What is A Computer","Emacs","Git","Questions, Issues","<no title>","Known installation issues","Self-Study Videos","General Topics","Python Quickstart Tutorial","Python Applications","Programming in C","Programming in C","Closing Remarks and Discussion","Writing Equations in documentation","Challenge Problem","Additional Resources","Setup Instructions","Syllabus","Week 1","By Topic","Tapis CLI","Developer Tools"],titleterms:{"1":[5,6,7,8,9,10,11,12,27,29,37],"10":28,"12":36,"16":36,"2":[5,6,7,8,9,10,11,12,13,27,29,37],"2023":[0,36],"3":[5,6,7,8,11,13,14,27,29],"4":[6,7,9,10,11,14,15,27,29],"5":[6,7,11,15,16,27,29,36],"6":27,"7":28,"9":36,"abstract":[29,30],"class":[7,8,12,13,14,15,16,29,30,33],"function":[29,30],"switch":8,A:19,By:38,In:7,With:[21,29],access:3,ad:8,addit:[11,34],after:[12,13,14],ahead:[12,13,14,15,16],ai:28,alloc:6,allow:11,altern:3,an:[3,8,11],app:[3,11,29],applic:[3,28,29,30],arrai:29,assign:[4,5,6,8,9,10,11,12,13,14,15,16,17],basic:[3,27],befor:[12,13,14,15],between:3,binari:[6,7],bonu:9,bootcamp:0,browser:3,build:[3,11],c:[2,4,5,6,7,8,9,10,11,29,30,35,36],challeng:[15,33],chapter:[27,28],cli:39,close:31,cmake:18,code:35,coloredshap:8,command:[3,11],compil:[29,30],complex:30,comput:[5,19,29,30,35],condit:[29,30],content:[0,25,39,40],continu:29,creat:[3,21],csv:[6,7],dai:[5,6,7,8,9,10,11,12,13,14,15,16,29,35],data:[6,7,27,29],demonstr:2,design:30,develop:40,dgemm:6,discuss:31,document:32,editor:26,element:33,emac:[20,26],engin:8,equat:32,exampl:29,execut:11,exercis:[7,11,12,13,14,15,16,30],explor:11,file:[3,6,7,11,27,29],finish:8,fork:[21,35],frank:11,free:30,from:[6,7],frontera:3,gener:26,git:[21,26,35],graphic:2,gui:[2,30],hardwar:19,hpc:36,i:29,instal:[24,35],instruct:35,interfac:2,intoduct:29,introduct:[29,30,36],intrpduct:29,io:27,issu:[22,24,35],job:[11,29],june:36,just:11,known:[24,35],languag:29,learn:28,let:8,linux:3,live:[12,13,14,15,16],local:21,loop:[29,30],mac:35,machin:28,maco:[24,35],malloc:30,manag:[29,30],materi:33,matmul:9,matrix:27,memori:[6,29,30],method:33,modul:27,mpi:[9,10,29],name:[29,30],nheri:0,node:33,numer:5,o:29,object:27,off:8,oop:29,openmp:[10,11,29],oper:[27,29,30],orient:27,origin:21,other:[6,7,11],outlin:27,parallel:[9,10,11,29,30],pi:[5,9],plot:27,plotter:33,pointer:[29,30],portion:[12,13,14,15,16],practic:[12,13,14,15],problem:[5,6,7,8,9,10,11,12,13,14,15,33],program:[0,2,6,7,15,27,29,30],python:[2,12,13,14,15,16,27,28,35,36],qt5:30,quadrat:5,question:22,quick:2,quickstart:27,read:[6,7],remark:31,remot:21,repo:21,repositori:35,requir:8,resourc:[2,34],review:7,run:3,s:[12,13,14,15],scrab:28,self:[12,13,14,15,16,25],session:3,set:11,setup:[2,3,4,26,35],simcent:[0,30,35],sizeof:30,softwar:19,solut:9,solv:5,step:11,stress:[5,7],structur:[6,7,29,30],strut:29,studi:[12,13,14,15,16,25],submit:11,subprocess:27,syllabu:36,synch:21,syntax:8,system:[3,11,29,33],tacc:3,tapi:[3,11,29,39],test:[4,35],tomorrow:[12,13,14,15],tool:[30,40],topic:[26,38],transfer:3,transform:[5,7],tutori:27,type:[27,29,30],up:11,us:[6,7,9,10,11,21],user:2,variabl:[29,30,33],vector:[8,30],via:3,video:25,watch:[12,13,14,15],web:28,week:37,welcom:0,what:19,window:[24,35],work:21,write:[6,7,32],you:8,your:[3,9,11,21]}}) \ No newline at end of file diff --git a/docs/source/assignment_C1.html b/docs/source/assignment_C1.html index f334af5..e728523 100644 --- a/docs/source/assignment_C1.html +++ b/docs/source/assignment_C1.html @@ -106,7 +106,7 @@
          • C: Assignments Day 2
          • C: Assignments Day 3
            • -
          • C: Assignments Day 4
            • +
          • C: Assignments Day 4
          • C: Assignments Day 5
          • Python: Assignments Day 1
          • Python: Assignments Day 2
            • diff --git a/docs/source/assignment_C2.html b/docs/source/assignment_C2.html index 5ba122f..ff2e157 100644 --- a/docs/source/assignment_C2.html +++ b/docs/source/assignment_C2.html @@ -102,11 +102,11 @@
          • Problem 2: Using structures
          • Problem 3: Writing data for use by other programs: CSV
          • Problem 4: Writing to a binary file
            • -
          • Problem 5: Reading From a binary file and Memory Allocation
            • +
          • Problem 5: Reading From a CSV file, Memory Allocation & Writing to Binary
        • C: Assignments Day 3
          • -
        • C: Assignments Day 4
          • +
        • C: Assignments Day 4
        • C: Assignments Day 5
        • Python: Assignments Day 1
        • Python: Assignments Day 2
          • @@ -445,57 +445,62 @@

          Problem 4: Writing to a binary fileq to exit this utility.

          -
          -

          Problem 5: Reading From a binary file and Memory Allocation

          -

          Reading of data from files and placing them into containers such as Vectors is easy if you know the size of the data you are reading. If this is unknown the problem becomes more tricky. The solution presented on slide 22 worked for a small number of inputs, but failed with a segmentation fault for larger problems. You are to fix the problem. A copy of the offending file file3.c has been placed in the directory ex2-5 along with two files. The program can handle the first small.txt, it will fail with the second big.txt. Can you make the program work. The solution will test your understanding of file I/O, memory management and pointers.

          +
          +

          Problem 5: Reading From a CSV file, Memory Allocation & Writing to Binary

          +

          Reading of data from files and placing them into containers such as Vectors is easy if you know the size of the data you are reading. If this is unknown the problem becomes more tricky. The solution presented on slide 22 worked for a small number of inputs, but failed with a segmentation fault for larger problems. You are to fix the problem. A copy of the offending file file3.c has been placed in the directory binaryFile along with two files. The program can handle the first small.txt, it will fail with the second big.txt. Can you make the program work. The solution will test your understanding of file I/O, memory management and pointers.

          Initial code is provided in the /assignments/C-Day2/binaryFile directory.

          +

          At end of the program, you are asked to modify the code so that the results of the two vectors are ouput to a binary file. Output the contents of vector1 followed by vector2.

          The file3.c is as shown below. You need to put some code to replace comment at the line 41.

           1
- 2/*******************************************************************
- 3 * program to read values from a file, 
- 4 * with each line being csv list of int and two double
- 5 *
- 6 * program fails if num lines > 100
- 7 *    Major flaw will cause data to be overwritten outside array 
- 8 *    bounds if #lines > 100 & will ultimataly lead to a segmentation fault
- 9 *
-10 * Exerise is to fix flaw WITHOUT just setting maxVectorSize incredibly large
-11 *
-12 * written: fmk
-13 ******************************************************************* */
+ 2// program to read values from a file, each file a csv list of int and two double
+ 3// written: fmk
+ 4
+ 5#include <stdio.h>
+ 6#include <stdlib.h>
+ 7
+ 8int main(int argc, char **argv) {
+ 9
+10  if (argc != 3) {
+11    fprintf(stdout, "ERROR correct usage appName inputFile outputBinaryFile\n");
+12    return -1;
+13  }
 14
-15#include <stdio.h>
-16#include <stdlib.h>
-17
-18int main(int argc, char **argv) {
-19
-20  if (argc != 2) {
-21    fprintf(stdout, "ERROR correct usage appName inputFile\n");
-22    return -1;
-23  }
-24  
-25  FILE *filePtr = fopen(argv[1],"r"); 
-26
-27  int i = 0;
-28  float float1, float2;
-29  int maxVectorSize = 100;
-30  double *vector1 = (double *)malloc(maxVectorSize*sizeof(double));
-31  double *vector2 = (double *)malloc(maxVectorSize*sizeof(double));  
-32  int vectorSize = 0;
-33  
-34  while (fscanf(filePtr,"%d, %f, %f\n", &i, &float1, &float2) != EOF) {
-35    vector1[vectorSize] = float1;
-36    vector2[vectorSize] = float2;
-37    printf("%d, %f, %f\n",i, vector2[i], vector1[i]);
-38    vectorSize++;
-39
-40    if (vectorSize == maxVectorSize) {
-41      /* some code needed here .. programming exercise */
-42    }
-43  }
-44
-45  fclose(filePtr);  
-46}
+15  //
+16  // read from ascii file
+17  //
+18  
+19  FILE *filePtr = fopen(argv[1],"r"); 
+20
+21  int i = 0;
+22  float float1, float2;
+23  int maxVectorSize = 100;
+24  double *vector1 = (double *)malloc(maxVectorSize*sizeof(double));
+25  double *vector2 = (double *)malloc(maxVectorSize*sizeof(double));  
+26  int vectorSize = 0;
+27  
+28  while (fscanf(filePtr,"%d, %f, %f\n", &i, &float1, &float2) != EOF) {
+29    vector1[vectorSize] = float1;
+30    vector2[vectorSize] = float2;
+31    printf("%d, %f, %f\n",i, vector2[i], vector1[i]);
+32    vectorSize++;
+33
+34    if (vectorSize == maxVectorSize) {
+35      // some code needed here I think .. programming exercise
+36    }
+37  }
+38  
+39  fclose(filePtr);
+40
+41  //
+42  // write data to binary file
+43  //
+44  
+45  FILE *filePtrB = fopen(argv[2],"wb");
+46  
+47  // some missing code to write vector1, followed by vector 2
+48  
+49  fclose(filePtrB);  
+50}

          The small.txt file is as shown below.

          @@ -513,13 +518,17 @@

          Problem 5: Reading From a binary file and Memory Allocation

          Note

          -

          No cmake or Makefile has been provided. You can compile the file with icc or whatever compiler you are using. The program takes a single input, the file to read. To compile and test the program, issue the following at the terminal prompt.

          +

          No cmake or Makefile has been provided. You can compile the file with icc or whatever compiler you are using. The program takes two inputs, the file to read and the file to write. To compile and test the program, issue the following at the terminal prompt. When done compare the file sizes of the binary file to the text file.

          icc file3.c -o file3
 ./file2 small.txt
 ./file2 big.txt

          +
          +

          Note

          +

          Give some thought as to how you would open the file and read back in the two vectors. If you have some time, write a program to do and have that program write the contents of the binary files to a csv file.

          +
          diff --git a/docs/source/assignment_C3.html b/docs/source/assignment_C3.html index 4bfa63a..eab3920 100644 --- a/docs/source/assignment_C3.html +++ b/docs/source/assignment_C3.html @@ -43,7 +43,7 @@ - + @@ -103,7 +103,7 @@
        • Problem 3: An engineering Vector Class requires you to finish off

        -
      • C: Assignments Day 4
        • +
      • C: Assignments Day 4
      • C: Assignments Day 5
      • Python: Assignments Day 1
      • Python: Assignments Day 2
        • @@ -469,7 +469,7 @@

        Problem 3: An engineering Vector Class requires you to finish off - + diff --git a/docs/source/assignment_C4.html b/docs/source/assignment_C4.html index c81245e..ed10506 100644 --- a/docs/source/assignment_C4.html +++ b/docs/source/assignment_C4.html @@ -42,7 +42,9 @@ - + + + @@ -88,11 +90,27 @@

        Contents:

        -