Skip to content
This is a software which allows the user to study the behavior of water diffusion (using DTI data) along the length of the white matter fiber-tracts
C++ CMake Other
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
Applications
CMake
SuperBuild
.gitignore
CMakeLists.txt
CTestConfig.cmake
Common.cmake
DTIAtlasFiberAnalyzer.cmake
License.txt
README.md
SuperBuild.cmake

README.md

DTI Fiber Tract Statistics

What is it?

This is a software which allows the user to study the behavior of water diffusion (using DTI data) along the length of the white matter fiber-tracts. Various tract-oriented scalar diffusion measures obtained from DTI brain images, are treated as a continuous function of white matter fibers' arc-length. To analyze the trend along a given fiber tract, a command line tool performs kernel regression on this data. The idea is to try out different noise models and maximum likelihood estimates within kernel windows (along the tract), such that they best represent the data and are robust to noise and Partial Volume effect.

The package contains several command line based modules and an GUI based tool called DTIAtlasFiberAnalyzer to access most functions.

This package is also available as a 3D Slicer extension (http://www.slicer.org) called DTIAtlasFiberAnalyzer.

Some documentation about the features available in this package are available here: http://www.na-mic.org/Wiki/index.php/Projects:dtistatisticsfibers

License

See License.txt

More information

Find the tool on NITRC

Building from source

Install Qt5

Building using Qt5 is recommended. This version has been build with Qt5.5.1 but it may work with newer version. You can download Qt5 from here

Clone this repository and build

  git clone https://github.com/NIRALUser/DTIFiberTractStatistics.git
  mkdir DTIFiberTractStatistics-build
  cd DTIFiberTractStatistics-build
  cmake -DUSE_QT4:BOOL=OFF -DQt5_DIR:PATH=/your/install/directory/Qt5.5.1/lib/cmake/Qt5 ../DTIFiberTractStatistics

If you want to build FADTTS you should use the following settings

  cmake -DUSE_QT4:BOOL=OFF -DBUILD_FADTTS:BOOL=ON -DQt5_DIR:PATH=/your/install/directory/Qt5.5.1/lib/cmake/Qt5 ../DTIFiberTractStatistics
You can’t perform that action at this time.