From 3593ab212612fbffb12ae7ddd904bb98f76c7069 Mon Sep 17 00:00:00 2001
From: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date: Thu, 11 May 2023 21:05:04 +0000
Subject: [PATCH] end of day commit

---
 .../configs/{primordial_config.sh => cp0.sh}       | 14 ++++++++++----
 prototypes/gen_prototype.sh                        | 13 +++++++++----
 2 files changed, 19 insertions(+), 8 deletions(-)
 rename prototypes/configs/{primordial_config.sh => cp0.sh} (72%)

diff --git a/prototypes/configs/primordial_config.sh b/prototypes/configs/cp0.sh
similarity index 72%
rename from prototypes/configs/primordial_config.sh
rename to prototypes/configs/cp0.sh
index fa552c647..19d89c5d1 100644
--- a/prototypes/configs/primordial_config.sh
+++ b/prototypes/configs/cp0.sh
@@ -1,5 +1,7 @@
+# top level options
 GWHASH=e55f090
 GDASHASH=58d0b9b
+BUILD="NO"
 PSLOT=apple
 PROTOROOT=/scratch1/NCEPDEV/da/Cory.R.Martin/GDAS_prototypes
 GWDIR=$PROTOROOT/$PSLOT
@@ -7,13 +9,17 @@ DUMPDIR=/scratch1/NCEPDEV/da/role.jedipara/dump/
 ICSDIR=/scratch1/NCEPDEV/stmp4/Cory.R.Martin/tmp_ics
 expdir=$PROTOROOT/expdirs
 comrot=$PROTOROOT/rotdirs
-BUILD="NO"
 idate=2021073118
 edate=2021080118
 app="ATM"
 starttype="cold"
 gfscyc=0
 resdet=96
-resens=48
-nens=80
-
+resens=96
+nens=0
+# config.* options
+DO_JEDIVAR="YES"
+DO_JEDIENS="NO"
+DO_JEDIOCNVAR="NO"
+DO_JEDILANDDA="NO"
+DO_MERGENSST="NO"
diff --git a/prototypes/gen_prototype.sh b/prototypes/gen_prototype.sh
index 51451ce7c..43aa66c1d 100755
--- a/prototypes/gen_prototype.sh
+++ b/prototypes/gen_prototype.sh
@@ -75,12 +75,13 @@ base:
   HPSS_PROJECT: "emc-da"
   HOMEDIR: "/scratch1/NCEPDEV/da/${USER}"
   DMPDIR: "${DUMPDIR}"
-atmanl:
-  OBS_LIST: "/dev/null"
+  DO_JEDIVAR: "${DO_JEDIVAR}"
+  DO_JEDIENS: "${DO_JEDIENS}"
+  DO_JEDIOCNVAR: "${DO_JEDIOCNVAR}"
+  DO_JEDILANDDA: "${DO_JEDILANDDA}"
+  DO_MERGENSST: "${DO_MERGENSST}"
 EOF
 
-
-
 # setup experiment
 cd $GWDIR/global-workflow/workflow
 ./setup_expt.py gfs cycled --idate $idate  \
@@ -95,4 +96,8 @@ cd $GWDIR/global-workflow/workflow
                            --configdir $GWDIR/global-workflow/parm/config/gfs \
                            --comrot $comrot \
                            --expdir $expdir \
+                           --icsdir $ICSDIR \
                            --yaml $expdir/config_${PSLOT}.yaml
+
+# setup XML for workflow
+./setup_xml.py $expdir/$PSLOT