Skip to content

Latest commit

 

History

History
82 lines (63 loc) · 3.84 KB

MI-R1.3-99c4a218fe-AS_SSC_MEDIA_BIO_MOLECULES.md

File metadata and controls

82 lines (63 loc) · 3.84 KB

TITLE: FAIR Maturity Indicator MI-R1.3-99c4a218fe-AS_SSC_MEDIA_BIO_MOLECULES

Authors:

Ammar Ammar, ORCID:0000-0002-8399-8990

Publication Date: 2021-02-15

Last Edit: 2024-04-13

Accepted: pending

Maturity Indicator Identifier: MI-R1.3-99c4a218fe-AS_SSC_MEDIA_BIO_MOLECULES

This maturity indicator falls under the FAIR principle R1.3: (meta)data meet domain-relevant community standards

The ID of this MI is composed of the following segments (separated by hyphen):

  1. Acronym for "Maturity Indicator"
  2. The FAIR principle this maturity indicator belongs to
  3. The first 10 characters truncated from the SHA-256 hash of the primary reference DOI of this maturity indicator.
  4. A short name to distinguish the maturity indicator definition file

This MI is to indicate if the biological molecules (proteins) in the simulated surface contact media (in air-surface exposure scenarios) is reported by the nano toxicity study data or not.

Maturity Indicator Name: The biological molecules (proteins) inthe simulated surface contact media (in air-surface exposure scenarios) is reported by the nano toxicity study

This maturity indicator is extracted from the following paper Title: Harmonizing Across Environmental Nanomaterial Testing Media for Increased Comparability of Nanomaterial Datasets DOI: https://doi.org/10.1039/C9EN00448C

To which principle does it apply?

R1.3

What is being measured?

If the biological molecules (proteins) in the simulated surface contact media (in air-surface exposure scenarios) is reported by the nano toxicity study data or not.

Why should we measure it?

The ratio of the NM surface to the amount of proteins present can have an important role in terms of proteins bound in the corona: for some NMs more proteins available results in thicker coronas of the same composition, while for others quite different coronas occur at different surface area: FBS ratios.

What must be provided for the measurement?

If the value is measured and reported in the data, the following field(s) should appear in JSON-LD metadata:

Field Name Alternative terms
simulated surface contact media proteins simulated_surface_contact_media_proteins,
simulated-surface-contact-media-proteins,
SimulatedSurfaceContactMediaProteins

How is the measurement executed?

The "simulated surface contact media proteins" should be provided in a machine-readable format (JSON-LD) which can be queried using open universal protocol like HTTP.

What is/are considered valid result(s)?

The presence of the field "simulated surface contact media proteins" in the JSON-LD metadata means the measurement is reported which is the valid result.

For which digital resource(s) is this relevant? (or 'all')

For nano toxicity related datasets.

Examples of good practices (that would score well on this assessment)

{
 	"@context": {
 		"bs": "https://bioschemas.org/",
 		"schema": "https://schema.org/",
 		"citation": "schema:citation",
 		"name": "schema:name",
 		"url": "schema:url",
 		"variableMeasured": "schema:variableMeasured",
 		"unitText": "schema:unitText"
 	},
 	"@type": "schema:Dataset",
 	"name": "Dataset title",
 	"@id": "Dataset DOI",
 	"url": "Dataset URL",
 	"citation": "Dataset Citation/Publication",
 	"variableMeasured": [
 		{
 			"@type": "schema:PropertyValue",
 			"name": "simulated surface contact media proteins"
 		}
 	]
 }

Comments