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TITLE: FAIR Maturity Indicator MI-R1.3-99c4a218fe-LS_MAM_MEDIA_SERUM_SOURCE

Authors:

Ammar Ammar, ORCID:0000-0002-8399-8990

Publication Date: 2021-02-15

Last Edit: 2021-05-03

Accepted: pending

Maturity Indicator Identifier: MI-R1.3-99c4a218fe-LS_MAM_MEDIA_SERUM_SOURCE

This maturity indicator falls under the FAIR principle R1.3: (meta)data meet domain-relevant community standards

The ID of this MI is composed of the following segments (separated by hyphen):

  1. Acronym for "Maturity Indicator"
  2. The FAIR principle this maturity indicator belongs to
  3. The first 10 characters truncated from the SHA-256 hash of the primary reference DOI of this maturity indicator.
  4. A short name to distinguish the maturity indicator definition file

This MI is to indicate if the serum source of the mammalian culture media (in liquid-surface exposure scenarios) is reported by the nano toxicity study data or not.

Maturity Indicator Name: The serum source of the mammalian culture media (in liquid-surface exposure scenarios) is reported by the nano toxicity study

This maturity indicator is extracted from the following paper Title: Harmonizing Across Environmental Nanomaterial Testing Media for Increased Comparability of Nanomaterial Datasets DOI: https://doi.org/10.1039/C9EN00448C

To which principle does it apply?

R1.3

What is being measured?

If the serum source of the mammalian culture media (in liquid-surface exposure scenarios) is reported by the nano toxicity study data or not.

Why should we measure it?

The source of the serum (fetal bovine, fetal calf, or other animal sera such as mouse, rat, rabbit or horse, as well as human) is an important consideration, as the different sera have been shown to result in quite different corona compositions and differential cellular uptake of the particles and thus differential toxicity induction in cells.

What must be provided for the measurement?

If the value is measured and reported in the data, the following field(s) should appear in JSON-LD metadata:

Field Name Alternative terms
mammalian media serum source mammalian_media_serum_source,
mammalian-media-serum-source,
MammalianMediaSerumSource

How is the measurement executed?

The mammalian media serum source should be provided in a machine-readable format (JSON-LD) which can be queried using open universal protocol like HTTP.

What is/are considered valid result(s)?

The presence of the field "mammalian media serum source" in the JSON-LD metadata means the measurement is reported which is the valid result.

For which digital resource(s) is this relevant? (or 'all')

For nano toxicity related datasets.

Examples of good practices (that would score well on this assessment)

{
 	"@context": {
 		"bs": "https://bioschemas.org/",
 		"schema": "https://schema.org/",
 		"citation": "schema:citation",
 		"name": "schema:name",
 		"url": "schema:url",
 		"variableMeasured": "schema:variableMeasured",
 		"unitText": "schema:unitText"
 	},
 	"@type": "schema:Dataset",
 	"name": "Dataset title",
 	"@id": "Dataset DOI",
 	"url": "Dataset URL",
 	"citation": "Dataset Citation/Publication",
 	"variableMeasured": [
 		{
 			"@type": "schema:PropertyValue",
 			"name": "mammalian media serum source"
 		}
 	]
 }

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