Ammar Ammar, ORCID:0000-0002-8399-8990
Maturity Indicator Identifier: MI-R1.3-324358ad68-IV-PROTEIN_IDENT_CONFIDENCE
This maturity indicator falls under the FAIR principle R1.3: (meta)data meet domain-relevant community standards
The ID of this MI is composed of the following segments (separated by hyphen):
- Acronym for "Maturity Indicator"
- The FAIR principle this maturity indicator belongs to
- The first 10 characters truncated from the SHA-256 hash of the primary reference DOI of this maturity indicator.
- A short name to distinguish the maturity indicator definition file
This MI is to indicate if "protein identification confidence" information is reported by the nano toxicity study data or not.
Maturity Indicator Name: The protein identification confidence information is reported by the nano toxicity study
This maturity indicator is extracted from the following paper Title: Best practice in reporting corona studies: minimum information about Nanomaterial Biocorona Experiments (MINBE) DOI: https://doi.org/10.1016/j.nantod.2019.06.004
R1.3
If the protein identification confidence information is reported by the nano toxicity study data or not.
Protein identification confidence inforamtion is important to report for corona characterization and to maximize the ability cross-comparison with other reported studies. Information to report: â?¢ % Coverage: The percentage of the protein sequence covered. â?¢ Number of peptides: Total number of peptides detected for each protein, ideally 2 or more peptides. â?¢ Number of unique peptides: Number of peptide sequences that are unique to the identified protein. â?¢ Missed cleavages: Number of missed cleavages in the protein or peptide sequence. â?¢ Protein probabilities and scores: Calculated probabilities or scores to give a sense of confidence in a protein identification.
If the value is measured and reported in the data, the following field(s) should appear in JSON-LD metadata:
Field Name | Alternative terms |
---|---|
protein identification confidence | protein_identification_confidence, protein-identification-confidence |
The "protein identification confidence" should be provided in a machine-readable format (JSON-LD) which can be queried using open universal protocol like HTTP.
The presence of the field "protein identification confidence" in the JSON-LD metadata means the measurement is reported which is the valid result.
For nano toxicity related datasets.
{
"@context": {
"bs": "https://bioschemas.org/",
"schema": "https://schema.org/",
"citation": "schema:citation",
"name": "schema:name",
"url": "schema:url",
"variableMeasured": "schema:variableMeasured",
"unitText": "schema:unitText"
},
"@type": "schema:Dataset",
"name": "Dataset title",
"@id": "Dataset DOI",
"url": "Dataset URL",
"citation": "Dataset Citation/Publication",
"variableMeasured": [
{
"@type": "schema:PropertyValue",
"name": "protein identification confidence"
}
]
}