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egonozer edited this page Jun 11, 2025
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Chicago, IL June 2025
Egon A. Ozer, MD PhD (e-ozer@northwestern.edu)
Ramon Lorenzo Redondo, PhD (ramon.lorenzo@northwestern.edu)
Section 1 - Terminal and the Command Line
Section 2 - Basic Shell Programming
Section 3 - Using Mamba and Environments
Section 4 - Moving Data to and from Quest
Section 5 - How to use Slurm
Section 1 - Sequencing File Types
Section 2 - Bacterial Short Read Assembly
Section 3 - Generating Viral Consensus Sequences
Section 4 - Alignment and Variant Callilng
Section 1 - Nanopore Long Read Assembly
Section 2 - Introduction to Phylogenetics
Section 3 - Basic Data Visualization in R
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