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DIA-Umpire SE spectral library + DIANN
#319 by ekvall93 was closed Mar 14, 2021
Closed 2
[ERROR] - Cannot find Protein, Total Peptide Ions, Unique Pep...
#418 by DanielConole was closed Aug 4, 2021
Closed 1
tmp dir full ->
#306 by jjGG was closed Feb 19, 2021
Closed 2
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30 Open 398 Closed
30 Open 398 Closed
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EasyPQP (v0.1.25) in FragPipe (v16.0) TypeError: unsupported operand type(s) for +: 'int' and 'NoneType' speclib
#473 opened Sep 27, 2021 by GianArauz
@guoci
1
Different PSM and Peptide identified when processed same raw file with different batch.
#472 opened Sep 27, 2021 by Jadeja8494
4
"TMT-Integrator can't find the 'Purity' column" Philosopher
#471 opened Sep 26, 2021 by dnwhdals
@prvst @sarah-haynes @anesvi
11
TMT-integrator filtering: peptide tmt-report abundance has < 10% of peptide.tsv IDs Philosopher tmt-i
#469 opened Sep 23, 2021 by MiguelCos
@prvst @anesvi
7
TMT10-plex error
#467 opened Sep 22, 2021 by rajeshksoni11
12
Fatal error can't decode packed binary Philosopher
#466 opened Sep 22, 2021 by haiyan-MS
@prvst
10
EasyPQP in FragPipe (v16.0) is not recognized speclib
#464 opened Sep 17, 2021 by JantineEMC
@guoci
3
Open search of timsTOFpro data errs with could not find mzData message PTM-S
#463 opened Sep 15, 2021 by animesh
@danielgeiszler
12
Conversion of FragPipe workflow file into philosopher pipeline config file enhancement FragPipe
#462 opened Sep 14, 2021 by tobiasko
@guoci @fcyu
15
error with PeptideProphet Philosopher
#456 opened Sep 9, 2021 by mbikaki
@prvst
5
Automation of FragPipe enhancement
#451 opened Sep 7, 2021 by KR-15
@fcyu
1
Mismatch combined_protein.tsv and reprint files Philosopher
#450 opened Aug 31, 2021 by magnusarntzen
@prvst
12
The site report illustration in tutorial_tmt.md is not correct tmt-i
#438 opened Aug 23, 2021 by fcyu
@sarah-haynes
3
Add requirement for Visual C++ 2010? FragPipe
#431 opened Aug 18, 2021 by acesnik
@fcyu
1
Empty Prev AA or Next AA crashes IonQuant. Philosopher
#420 opened Aug 6, 2021 by giorgiolivi
@prvst
7
Philosopher does not print 'ion mobility' column to psm.tsv if there is no PSM but the data is from ddaPASEF Philosopher
#419 opened Aug 5, 2021 by rajeshksoni11
@prvst
9
Feature request? enhancement
#396 opened Jun 25, 2021 by Alemarcohen
2
split_peptide_index_tempdir is deleted by Windows before MSFragger finishing speclib
#389 opened Jun 9, 2021 by kguehrs
@guoci
13
Restricted semi-specific searches with fixed N/Cterm (like MQs SemiSpecFreeNt/Ct) enhancement
#321 opened Mar 9, 2021 by kabalak
@fcyu
6
How to obtain intensities of PTM peptides from PTMprophet and IonQuant enhancement
#305 opened Feb 11, 2021 by algom
2
MSFragger Result Viewer
#300 opened Feb 1, 2021 by hcadre
7
Philosopher: ions with different modified sites are collapsed in ion.tsv file. Philosopher
#279 opened Dec 13, 2020 by andyzim111
@prvst
12
Is there any way to export phosphosites on proteins from FragPipe analyzing phosphoproteomics data?
#278 opened Dec 13, 2020 by andyzim111
@fcyu
2
Normalized retention time need to be restricted in the range speclib
#272 opened Dec 7, 2020 by fcyu
@guoci
3
There are zero intensity peaks in the spectral library built by easypqp speclib
#270 opened Dec 7, 2020 by fcyu
@guoci
3
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