Skip to content

Philosopher 5.1.0

Choose a tag to compare
@AimeeD90 AimeeD90 released this 19 Dec 20:47
· 39 commits to master since this release


  • Supported IBT-16 isobaric tag
  • Extended support for up to 32 isobaric labels.
  • Added the 'minPepLen' control option for protein probability assignment
  • Added the dbbin option to resue the prebuilt db.bin file


  • Used unique+razor peptides only for PSM-protein level roll up
  • For plex with 0 PSMs, let philosopher print a warning and exit normally
  • Excluded decoys from protein quantification (protein.tsv)
  • Removed the warning message for running 'workspace --clean' in a clean direcotry


  • Fixed a problem occurring when parsing custom database with headers starting with '>AT'
  • Fixed a bug related to summed intensites in protein.tsv
  • Fixed a bug causing empty intensities in msstats.tsv related with multiplex TMT11 data.
  • Fixed a crash when there are non-zero TMT intensities and removelow > 0
  • Updated the purity calculation