This bug only affects Linux. JLink is hard-coded to use a dummy `java.util.prefs.Preferences` implementation on Linux that crashes NetLogo when used through Mathematica-Link. We disable their workaround so things work normally again. For reference: https://mathematica.stackexchange.com/questions/215433/pr event-jlink-from-using-a-disabledpreferencesfactory-with-java-on-linux