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VisuAlign

VisuAlign is one of several tools developed by by the Nesys laboratory, University of Oslo with the aim of facilitating brain atlas based analysis and integration of experimental data and knowledge about the human and rodent brain. VisuAlign is a stand-alone tool for user guided non-linear spatial registration (anchoring) of sectional image data, typically high resolution histological images, to a 3D reference atlas space after a first alignment with QuickNII has been performed.

Acknowledgements

VisuAlign is developed by the Neural Systems Laboratory at the Institute of Basic Medical Sciences, University of Oslo, Norway. VisuAlign was developed with support from the EBRAINS infrastructure, and funding from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Framework Partnership Agreement No. 650003 (HBP FPA) and the European Union’s Horizon Europe Programme for Research Infrastructures Grant Agreement No. 101147319 (EBRAINS 2.0).

Documentation

https://visualign.readthedocs.io

Developer

Gergely Csucs

Authors

Maja A Puchades, Sharon Yates, Jan G Bjaalie.

Licence

  • Main component: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International
  • Source code: MIT licence

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Current version

  • version 0.9

Contact us

Report issues here on github or email: support@ebrains.eu

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Online manual: https://visualign.readthedocs.io

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