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<?xml version="1.0" encoding="UTF-8"?>
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 ../Schemas/NeuroML2/NeuroML_v2beta4.xsd"
id="NML2_FullNeuroML">
<!-- Example containing a range of different elements from NeuroML 2 -->
<!--++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++-->
<!-- Strucure of cell neurites -->
<morphology id="NeuroMorpho_PyrCell123"> <!-- see FullCell.xml for more details -->
<segment id ="0" name="Soma">
<!-- no parent => root segment -->
<proximal x="0" y="0" z="0" diameter="10"/>
<distal x="10" y="0" z="0" diameter="10"/>
</segment>
<!-- more needed -->
</morphology>
<!--++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++-->
<!-- Ion channel specification -->
<ionChannelHH id="HH_Na" conductance="10pS" species="na"> <!-- see SimpleIonChannel.xml for more details -->
<!-- more needed -->
</ionChannelHH>
<!--++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++-->
<!-- Synaptic mechanism specification -->
<expTwoSynapse id="AMPA" gbase="0.5nS" erev="0mV" tauRise="1ms" tauDecay="2ms" />
<!--++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++-->
<!-- Biophysical properties of cell incl membrane, e.g. conductance densities, specific capacitance, etc. -->
<biophysicalProperties id="PyrCellChanDist">
<membraneProperties>
<!-- see FullCell.xml for more details on membraneProperties-->
<channelDensity id="naChans"
ionChannel="HH_Na"
segmentGroup="soma_group"
condDensity="120.0 mS_per_cm2"
ion="na"
erev="50mV"/> <!-- Temporarily specifying erev in the channelDensity element-->
<!-- Ions present inside the cell. Note: a fixed reversal potential is specified here
<reversalPotential species="na" value="50mV"/>
<reversalPotential species="k" value="-77mV"/>-->
<!-- more needed -->
</membraneProperties>
<intracellularProperties> <!-- used for bioelectrical properties inside a cell -->
<resistivity value="0.1 kohm_cm"/> <!-- Used for specific axial resistance -->
<!-- REMOVED UNTIL WE CHECK HOW THE USAGE OF LEMS IMPACTS THIS...
<biochemistry reactionScheme="InternalCaDynamics"/> Ref to earlier pathway -->
</intracellularProperties>
</biophysicalProperties>
<!--++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++-->
<!-- A cell is created by referencing its morphology and membrane/internal properties -->
<cell id="PyrCell"
morphology="NeuroMorpho_PyrCell123"
biophysicalProperties="PyrCellChanDist"/> <!-- see FullCell.xml for a full cell example -->
<!--++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++-->
<!-- A network of the cells is created -->
<network id="PyrCellNet">
<!-- see NestedNetwork.xml for a more detailed network containing these elements -->
<population id="Population1"
component="PyrCell"
extracellularProperties="extracellular"
size="9"> <!-- Population is "placed" in medium -->
</population>
<projection id="Proj1" presynapticPopulation="Population1" postsynapticPopulation="Population1" synapse="AMPA">
<!-- Further elements need to be added... -->
</projection>
</network>
</neuroml>