diff --git a/docs/source/whats_new.rst b/docs/source/whats_new.rst index 3c95bc744..9ac58f0d8 100644 --- a/docs/source/whats_new.rst +++ b/docs/source/whats_new.rst @@ -49,6 +49,7 @@ Bugs - Fix number of sessions in doc of :class:`moabb.datasets.Sosulski2019` (:gh:`565` by `Pierre Guetschel`_) - Fix `code` column of :class:`moabb.datasets.CastillosCVEP100` and :class:`moabb.datasets.CastillosCVEP100` (:gh:`567` by `Pierre Guetschel`_) - MAINT updating the packages pre-release (:gh:`578` by `Bruno Aristimunha`_) +- Fix mne_bids version incompatibility with mne (:gh:`586` by `Bruna Lopes`_) - Updating the parameters of the SSVEP_TRCA method (:gh:`589` by `Bruno Aristimunha`_) - Fix and updating the parameters for the benchmark function (:gh:`588` by `Bruno Aristimunha`_) - Fix :class:`moabb.datasets.preprocessing.SetRawAnnotations` setting incorrect annotations when the dataset's interval does not start at 0 (:gh:`607` by `Pierre Guetschel`_) @@ -449,4 +450,5 @@ API changes .. _Jordy Thielen: https://github.com/thijor .. _Sebastien Velut: https://github.com/swetbear .. _Brian Irvine: https://github.com/brianjohannes +.. _Bruna Lopes: https://github.com/brunaafl .. _Yash Chauhan: https://github.com/jiggychauhi diff --git a/examples/pipelines_DL/Keras_DeepConvNet.yml b/examples/pipelines_DL/Keras_DeepConvNet.yml index 911b6c21b..c5f63f113 100644 --- a/examples/pipelines_DL/Keras_DeepConvNet.yml +++ b/examples/pipelines_DL/Keras_DeepConvNet.yml @@ -25,7 +25,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 2 diff --git a/examples/pipelines_DL/Keras_EEGITNet.yml b/examples/pipelines_DL/Keras_EEGITNet.yml index a625a9413..705060482 100644 --- a/examples/pipelines_DL/Keras_EEGITNet.yml +++ b/examples/pipelines_DL/Keras_EEGITNet.yml @@ -25,7 +25,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 2 diff --git a/examples/pipelines_DL/Keras_EEGNeX.yml b/examples/pipelines_DL/Keras_EEGNeX.yml index c9da8efec..6d775b5ae 100644 --- a/examples/pipelines_DL/Keras_EEGNeX.yml +++ b/examples/pipelines_DL/Keras_EEGNeX.yml @@ -25,7 +25,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 2 diff --git a/examples/pipelines_DL/Keras_EEGNet_8_2.yml b/examples/pipelines_DL/Keras_EEGNet_8_2.yml index 28a4340b6..c2d26ee68 100644 --- a/examples/pipelines_DL/Keras_EEGNet_8_2.yml +++ b/examples/pipelines_DL/Keras_EEGNet_8_2.yml @@ -25,7 +25,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 2 diff --git a/examples/pipelines_DL/Keras_EEGTCNet.yml b/examples/pipelines_DL/Keras_EEGTCNet.yml index 8008283c6..4db2f17b6 100644 --- a/examples/pipelines_DL/Keras_EEGTCNet.yml +++ b/examples/pipelines_DL/Keras_EEGTCNet.yml @@ -25,7 +25,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 2 diff --git a/examples/pipelines_DL/Keras_ShallowConvNet.yml b/examples/pipelines_DL/Keras_ShallowConvNet.yml index 52f609dce..702169ef8 100644 --- a/examples/pipelines_DL/Keras_ShallowConvNet.yml +++ b/examples/pipelines_DL/Keras_ShallowConvNet.yml @@ -25,7 +25,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 2 diff --git a/moabb/pipelines/deep_learning.py b/moabb/pipelines/deep_learning.py index d31564352..cb1f558c0 100644 --- a/moabb/pipelines/deep_learning.py +++ b/moabb/pipelines/deep_learning.py @@ -10,7 +10,6 @@ from typing import Any, Dict import tensorflow as tf -from keras import backend as K from keras.constraints import max_norm from keras.layers import ( Activation, @@ -31,7 +30,9 @@ Permute, ) from keras.models import Model, Sequential +from keras.ops import pad from scikeras.wrappers import KerasClassifier +from tensorflow.keras import backend as K from moabb.pipelines.utils_deep_model import EEGNet, EEGNet_TC, TCN_block @@ -728,15 +729,15 @@ def _keras_build_fn(self, compile_kwargs: Dict[str, Any]): # ================================ - paddings = tf.constant([[0, 0], [0, 0], [3, 0], [0, 0]]) - block = tf.pad(block_in, paddings, "CONSTANT") + paddings = [[0, 0], [0, 0], [3, 0], [0, 0]] + block = pad(block_in, paddings, "constant") block = DepthwiseConv2D( (1, 4), padding="valid", depth_multiplier=1, dilation_rate=(1, 1) )(block) block = BatchNormalization()(block) block = Activation("elu")(block) block = Dropout(0.4)(block) - block = tf.pad(block, paddings, "CONSTANT") + block = pad(block, paddings, "constant") block = DepthwiseConv2D( (1, 4), padding="valid", depth_multiplier=1, dilation_rate=(1, 1) )(block) @@ -745,15 +746,16 @@ def _keras_build_fn(self, compile_kwargs: Dict[str, Any]): block = Dropout(self.drop_rate)(block) block_out = Add()([block_in, block]) - paddings = tf.constant([[0, 0], [0, 0], [6, 0], [0, 0]]) - block = tf.pad(block_out, paddings, "CONSTANT") + paddings = [[0, 0], [0, 0], [6, 0], [0, 0]] + block = pad(block_out, paddings, "constant") block = DepthwiseConv2D( (1, 4), padding="valid", depth_multiplier=1, dilation_rate=(1, 2) )(block) block = BatchNormalization()(block) block = Activation("elu")(block) block = Dropout(self.drop_rate)(block) - block = tf.pad(block, paddings, "CONSTANT") + print(block.dtype) + block = pad(block, paddings, "constant") block = DepthwiseConv2D( (1, 4), padding="valid", depth_multiplier=1, dilation_rate=(1, 2) )(block) @@ -762,15 +764,15 @@ def _keras_build_fn(self, compile_kwargs: Dict[str, Any]): block = Dropout(self.drop_rate)(block) block_out = Add()([block_out, block]) - paddings = tf.constant([[0, 0], [0, 0], [12, 0], [0, 0]]) - block = tf.pad(block_out, paddings, "CONSTANT") + paddings = [[0, 0], [0, 0], [12, 0], [0, 0]] + block = pad(block_out, paddings, "constant") block = DepthwiseConv2D( (1, 4), padding="valid", depth_multiplier=1, dilation_rate=(1, 4) )(block) block = BatchNormalization()(block) block = Activation("elu")(block) block = Dropout(self.drop_rate)(block) - block = tf.pad(block, paddings, "CONSTANT") + block = pad(block, paddings, "constant") block = DepthwiseConv2D( (1, 4), padding="valid", depth_multiplier=1, dilation_rate=(1, 4) )(block) @@ -779,15 +781,15 @@ def _keras_build_fn(self, compile_kwargs: Dict[str, Any]): block = Dropout(self.drop_rate)(block) block_out = Add()([block_out, block]) - paddings = tf.constant([[0, 0], [0, 0], [24, 0], [0, 0]]) - block = tf.pad(block_out, paddings, "CONSTANT") + paddings = [[0, 0], [0, 0], [24, 0], [0, 0]] + block = pad(block_out, paddings, "constant") block = DepthwiseConv2D( (1, 4), padding="valid", depth_multiplier=1, dilation_rate=(1, 8) )(block) block = BatchNormalization()(block) block = Activation("elu")(block) block = Dropout(self.drop_rate)(block) - block = tf.pad(block, paddings, "CONSTANT") + block = pad(block, paddings, "constant") block = DepthwiseConv2D( (1, 4), padding="valid", depth_multiplier=1, dilation_rate=(1, 8) )(block) diff --git a/pipelines/Keras_DeepConvNet.yml b/pipelines/Keras_DeepConvNet.yml index d09abc11b..ae0101f6b 100644 --- a/pipelines/Keras_DeepConvNet.yml +++ b/pipelines/Keras_DeepConvNet.yml @@ -27,7 +27,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 300 diff --git a/pipelines/Keras_EEGITNet.yml b/pipelines/Keras_EEGITNet.yml index 0920d4bae..b78557243 100644 --- a/pipelines/Keras_EEGITNet.yml +++ b/pipelines/Keras_EEGITNet.yml @@ -27,7 +27,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 300 diff --git a/pipelines/Keras_EEGNeX.yml b/pipelines/Keras_EEGNeX.yml index bdf8ff241..8c08a6edb 100644 --- a/pipelines/Keras_EEGNeX.yml +++ b/pipelines/Keras_EEGNeX.yml @@ -27,7 +27,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 300 diff --git a/pipelines/Keras_EEGNet_8_2.yml b/pipelines/Keras_EEGNet_8_2.yml index f7113df86..5ed67194d 100644 --- a/pipelines/Keras_EEGNet_8_2.yml +++ b/pipelines/Keras_EEGNet_8_2.yml @@ -27,7 +27,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 300 diff --git a/pipelines/Keras_EEGTCNet.yml b/pipelines/Keras_EEGTCNet.yml index 1f15098e8..f68ed0834 100644 --- a/pipelines/Keras_EEGTCNet.yml +++ b/pipelines/Keras_EEGTCNet.yml @@ -27,7 +27,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 300 diff --git a/pipelines/Keras_ShallowConvNet.yml b/pipelines/Keras_ShallowConvNet.yml index 4615010c9..626d428fa 100644 --- a/pipelines/Keras_ShallowConvNet.yml +++ b/pipelines/Keras_ShallowConvNet.yml @@ -27,7 +27,7 @@ pipeline: loss: "sparse_categorical_crossentropy" optimizer: - name: Adam - from: tensorflow.keras.optimizers.legacy + from: tensorflow.keras.optimizers parameters: learning_rate: 0.001 epochs: 300 diff --git a/poetry.lock b/poetry.lock index 959c6f3a0..f50b654c6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. 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"jaraco.functools", "jaraco.itertools", "more-itertools", "p [extras] carbonemission = ["codecarbon"] -deeplearning = ["braindecode", "keras", "libclang", "scikeras", "tensorflow", "torch"] +deeplearning = ["braindecode", "docstring_inheritance", "keras", "libclang", "scikeras", "tensorflow", "torch"] [metadata] lock-version = "2.0" -python-versions = ">=3.9, <3.12" -content-hash = "3b853bab38465b6acc05518f82123846b3081e566b6df774d5a07bcfaebdfdcf" +python-versions = ">=3.9,<3.13" +content-hash = "f27cf02f7254d13cf7311a52159cfa8ee37a4b4af81e1d2826ff40e23402a99c" diff --git a/pyproject.toml b/pyproject.toml index 0198ef180..38b6dc904 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -12,13 +12,13 @@ license = "BSD-3-Clause" [tool.poetry.dependencies] -python = ">=3.9, <3.12" +python = ">=3.9,<3.13" numpy = "^1.22" scipy = "^1.9.3" -mne = "<=1.6.1" +mne = "^1.7.0" pandas = "^1.5.2" -h5py = "<=3.8.0" -scikit-learn = "^1.2.0" +h5py = "^3.10.0" +scikit-learn = ">=1.4.2" matplotlib = 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