diff --git a/pkgs/applications/science/biology/slr/default.nix b/pkgs/applications/science/biology/slr/default.nix new file mode 100644 index 00000000000000..981cf2a6703169 --- /dev/null +++ b/pkgs/applications/science/biology/slr/default.nix @@ -0,0 +1,29 @@ +{stdenv, fetchurl, liblapack}: + +stdenv.mkDerivation { + name = "slr"; + src = fetchurl { + url = http://www.ebi.ac.uk/goldman-srv/SLR/download/current/slr_source.tgz; + sha256 = "0i81fv201p187mim4zakipxnhzqdvd3p5a9qa59xznc6458r2zsn"; + }; + + buildInputs = [ liblapack ]; + buildPhase = '' + cd src + ls + make -fMakefile.linux + ''; + installPhase = '' + ensureDir $out/bin + cp -v ../Slr $out/bin + ''; + + meta = { + description = "Phylogenetic Analysis by Maximum Likelihood (PAML)"; + longDescription = '' +SLR is a program to detect sites in coding DNA that are unusually conserved and/or unusually variable (that is, evolving under purify or positive selection) by analysing the pattern of changes for an alignment of sequences on an evolutionary tree. +''; + license = "GPL3"; + homepage = http://www.ebi.ac.uk/goldman/SLR/; + }; +}