From 47588733783c4133de4973caa466d52d9c04992a Mon Sep 17 00:00:00 2001 From: Luis Pedro Coelho Date: Wed, 4 May 2022 02:16:17 +0200 Subject: [PATCH] Static build for samtools Curses is not supported (it may be possible to support it) --- pkgs/applications/science/biology/samtools/default.nix | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix index 98b0394c35f1f18..ec61e0bd7ce43c1 100644 --- a/pkgs/applications/science/biology/samtools/default.nix +++ b/pkgs/applications/science/biology/samtools/default.nix @@ -22,8 +22,15 @@ stdenv.mkDerivation rec { buildInputs = [ zlib ncurses htslib ]; + preConfigure = lib.optional stdenv.hostPlatform.isStatic '' + export LIBS="-lz -lbz2 -llzma" + ''; + makeFlags = lib.optional stdenv.hostPlatform.isStatic "AR=${stdenv.cc.targetPrefix}ar"; + configureFlags = [ "--with-htslib=${htslib}" ] - ++ lib.optional (ncurses == null) "--without-curses"; + ++ lib.optional (ncurses == null) "--without-curses" + ++ lib.optional stdenv.hostPlatform.isStatic ["--without-curses" ] + ; preCheck = '' patchShebangs test/