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python37Packages.nibabel: 3.1.1 -> 3.2.0 #101905

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merged 1 commit into from Oct 28, 2020

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@r-ryantm
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@r-ryantm r-ryantm commented Oct 28, 2020

Automatic update generated by nixpkgs-update tools. This update was made based on information from passthru.updateScript.

meta.description for python37Packages.nibabel is: "Access a multitude of neuroimaging data formats"

meta.homepage for python37Packages.nibabel is: "https://nipy.org/nibabel"

meta.changelog for python37Packages.nibabel is: ""

Updates performed
  • Ran passthru.UpdateScript
To inspect upstream changes
Impact
Checks done (click to expand)

Rebuild report (if merged into master) (click to expand)
62 total rebuild path(s)

17 package rebuild(s)

17 x86_64-linux rebuild(s)
13 i686-linux rebuild(s)
17 x86_64-darwin rebuild(s)
15 aarch64-linux rebuild(s)


First fifty rebuilds by attrpath
python37Packages.dcmstack
python37Packages.dicom2nifti
python37Packages.dipy
python37Packages.heudiconv
python37Packages.nibabel
python37Packages.nilearn
python37Packages.nipy
python37Packages.nipype
python37Packages.nitime
python37Packages.pybids
python38Packages.dicom2nifti
python38Packages.dipy
python38Packages.nibabel
python38Packages.nilearn
python38Packages.nipy
python38Packages.nipype
python38Packages.pybids
Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/sw5glg2n3xbag5334ih960ijly8qaap3-python3.7-nibabel-3.2.0 \
  --option binary-caches 'https://cache.nixos.org/ https://nix-community.cachix.org/' \
  --option trusted-public-keys '
  nix-community.cachix.org-1:mB9FSh9qf2dCimDSUo8Zy7bkq5CX+/rkCWyvRCYg3Fs=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(The Cachix cache is only trusted for this store-path realization.)
For the Cachix download to work, your user must be in the trusted-users list or you can use sudo since root is effectively trusted.

Or, build yourself:

nix-build -A python37Packages.nibabel https://github.com/r-ryantm/nixpkgs/archive/5cfac92842c94bafb5d7570a15f8de6b2bea4e75.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/sw5glg2n3xbag5334ih960ijly8qaap3-python3.7-nibabel-3.2.0
ls -la /nix/store/sw5glg2n3xbag5334ih960ijly8qaap3-python3.7-nibabel-3.2.0/bin


Pre-merge build results

We have automatically built all packages that will get rebuilt due to
this change.

This gives evidence on whether the upgrade will break dependent packages.
Note sometimes packages show up as failed to build independent of the
change, simply because they are already broken on the target branch.

Result of nixpkgs-review 1

17 packages built:
  • python37Packages.dcmstack
  • python37Packages.dicom2nifti
  • python37Packages.dipy
  • python37Packages.heudiconv
  • python37Packages.nibabel
  • python37Packages.nilearn
  • python37Packages.nipy
  • python37Packages.nipype
  • python37Packages.nitime
  • python37Packages.pybids
  • python38Packages.dicom2nifti
  • python38Packages.dipy
  • python38Packages.nibabel
  • python38Packages.nilearn
  • python38Packages.nipy
  • python38Packages.nipype
  • python38Packages.pybids

Maintainer pings

cc @ashgillman for testing.

@SuperSandro2000
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@SuperSandro2000 SuperSandro2000 commented Oct 28, 2020

Result of nixpkgs-review pr 101905 1 run on x86_64-darwin

1 package failed to build:
  • python37Packages.nitime
16 packages built:
  • python37Packages.dcmstack
  • python37Packages.dicom2nifti
  • python37Packages.dipy
  • python37Packages.heudiconv
  • python37Packages.nibabel
  • python37Packages.nilearn
  • python37Packages.nipy
  • python37Packages.nipype
  • python37Packages.pybids
  • python38Packages.dicom2nifti
  • python38Packages.dipy
  • python38Packages.nibabel
  • python38Packages.nilearn
  • python38Packages.nipy
  • python38Packages.nipype
  • python38Packages.pybids
Current thread 0x000000010c447dc0 (most recent call first):                                                                                                                                   
File "/nix/store/v8k5myj44wkm4zcgg003c7xfh2lgh4xi-python3.7-matplotlib-3.3.1/lib/python3.7/site-packages/matplotlib/backend_bases.py", line 3499 in new_figure_manager_given_figure
File "/nix/store/v8k5myj44wkm4zcgg003c7xfh2lgh4xi-python3.7-matplotlib-3.3.1/lib/python3.7/site-packages/matplotlib/backend_bases.py", line 3494 in new_figure_manager

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@jonringer jonringer left a comment

LGTM

https://github.com/NixOS/nixpkgs/pull/101905
1 package failed to build:
python37Packages.nitime

16 packages built:
python37Packages.dcmstack python37Packages.dicom2nifti python37Packages.dipy python37Packages.heudiconv python37Packages.nibabel python37Packages.nilearn python37Packages.nipy python37Packages.nipype python37Packages.pybids python38Packages.dicom2nifti python38Packages.dipy python38Packages.nibabel python38Packages.nilearn python38Packages.nipy python38Packages.nipype python38Packages.pybids

upstreamed failing test nipy/nitime#181

@jonringer jonringer merged commit 7fecf2c into NixOS:master Oct 28, 2020
19 of 20 checks passed
@r-ryantm r-ryantm deleted the auto-update/python3.7-nibabel branch Oct 29, 2020
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3 participants