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bedtools: 2.29.0 -> 2.29.1 #75416

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merged 2 commits into from Dec 10, 2019
Merged

bedtools: 2.29.0 -> 2.29.1 #75416

merged 2 commits into from Dec 10, 2019

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@jbedo
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@jbedo jbedo commented Dec 10, 2019

Motivation for this change

New bedtools release.

Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option sandbox in nix.conf on non-NixOS linux)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nix-review --run "nix-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Determined the impact on package closure size (by running nix path-info -S before and after)
  • Ensured that relevant documentation is up to date
  • Fits CONTRIBUTING.md.
@markuskowa
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@markuskowa markuskowa commented Dec 10, 2019

@GrahamcOfBorg build bedtools

@markuskowa
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@markuskowa markuskowa commented Dec 10, 2019

The build fails on darwin (can't find gcc).

@jbedo
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@jbedo jbedo commented Dec 10, 2019

This was the case prior to the version bump. Should be fixed in a separate pull request though?

@markuskowa
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@markuskowa markuskowa commented Dec 10, 2019

A separate commit is sufficient.

@markuskowa
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@markuskowa markuskowa commented Dec 10, 2019

Thanks for fixing it.

@markuskowa markuskowa merged commit 3922a30 into NixOS:master Dec 10, 2019
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Evaluation Performance Report Evaluator Performance Report
Details
bedtools on aarch64-linux Success
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bedtools on x86_64-darwin Success
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bedtools on x86_64-linux Success
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grahamcofborg-eval ^.^!
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grahamcofborg-eval-check-maintainers matching changed paths to changed attrs...
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grahamcofborg-eval-check-meta config.nix: checkMeta = true
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grahamcofborg-eval-darwin nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A darwin-tested
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grahamcofborg-eval-nixos nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./nixos/release-combined.nix -A tested
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grahamcofborg-eval-nixos-manual nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./nixos/release.nix -A manual
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grahamcofborg-eval-nixos-options nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./nixos/release.nix -A options
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grahamcofborg-eval-nixpkgs-manual nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A manual
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grahamcofborg-eval-nixpkgs-tarball nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A tarball
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grahamcofborg-eval-nixpkgs-unstable-jobset nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A unstable
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grahamcofborg-eval-package-list nix-env -qa --json --file .
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grahamcofborg-eval-package-list-no-aliases nix-env -qa --json --file . --arg config { allowAliases = false; }
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