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bcftools: 1.9 -> 1.10.2 #76208

Merged
merged 1 commit into from Jan 3, 2020
Merged

bcftools: 1.9 -> 1.10.2 #76208

merged 1 commit into from Jan 3, 2020

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@r-ryantm
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@r-ryantm r-ryantm commented Dec 23, 2019

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/bcftools/versions.

meta.description for bcftools is: '"Tools for manipulating BCF2/VCF/gVCF format, SNP and short indel sequence variants"'.

meta.homepage for bcftools is: '"http://www.htslib.org/"

Release on GitHub

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Checks done (click to expand)
Rebuild report (if merged into master) (click to expand)

39 total rebuild path(s)

12 package rebuild(s)

11 x86_64-linux rebuild(s)
11 i686-linux rebuild(s)
8 x86_64-darwin rebuild(s)
9 aarch64-linux rebuild(s)

First fifty rebuilds by attrpath
bcftools
deeptools
python27Packages.HTSeq
python27Packages.cnvkit
python27Packages.pysam
python37Packages.HTSeq
python37Packages.cnvkit
python37Packages.pysam
python38Packages.HTSeq
python38Packages.cnvkit
python38Packages.pysam
truvari

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/7077pw76pm10ihkrypvj7wypb23kx7a2-bcftools-1.10.2 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A bcftools https://github.com/r-ryantm/nixpkgs/archive/c905a6da5a1125467d7daddb0f556c4f88784fa9.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/7077pw76pm10ihkrypvj7wypb23kx7a2-bcftools-1.10.2
ls -la /nix/store/7077pw76pm10ihkrypvj7wypb23kx7a2-bcftools-1.10.2/bin

cc @mimame for testing.

@mimame
mimame approved these changes Jan 2, 2020
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@mimame mimame left a comment

The new version is working fine

@ryantm ryantm merged commit ec29bb5 into NixOS:master Jan 3, 2020
16 checks passed
16 checks passed
Evaluation Performance Report Evaluator Performance Report
Details
bcftools on aarch64-linux Success
Details
bcftools on x86_64-darwin Success
Details
bcftools on x86_64-linux Success
Details
grahamcofborg-eval ^.^!
Details
grahamcofborg-eval-check-maintainers matching changed paths to changed attrs...
Details
grahamcofborg-eval-check-meta config.nix: checkMeta = true
Details
grahamcofborg-eval-darwin nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A darwin-tested
Details
grahamcofborg-eval-nixos nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./nixos/release-combined.nix -A tested
Details
grahamcofborg-eval-nixos-manual nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./nixos/release.nix -A manual
Details
grahamcofborg-eval-nixos-options nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./nixos/release.nix -A options
Details
grahamcofborg-eval-nixpkgs-manual nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A manual
Details
grahamcofborg-eval-nixpkgs-tarball nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A tarball
Details
grahamcofborg-eval-nixpkgs-unstable-jobset nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A unstable
Details
grahamcofborg-eval-package-list nix-env -qa --json --file .
Details
grahamcofborg-eval-package-list-no-aliases nix-env -qa --json --file . --arg config { allowAliases = false; }
Details
@r-ryantm r-ryantm deleted the r-ryantm:auto-update/bcftools branch Jan 6, 2020
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