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SPAdes: 3.13.1 -> 3.14.0 #79231

Merged
merged 1 commit into from Feb 5, 2020
Merged

SPAdes: 3.13.1 -> 3.14.0 #79231

merged 1 commit into from Feb 5, 2020

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@r-ryantm
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@r-ryantm r-ryantm commented Feb 4, 2020

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/spades/versions.

meta.description for SPAdes is: '"St. Petersburg genome assembler: assembly toolkit containing various assembly pipelines"'.

meta.homepage for SPAdes is: '"http://cab.spbu.ru/software/spades/"

Checks done (click to expand)
Rebuild report (if merged into master) (click to expand)

4 total rebuild path(s)

1 package rebuild(s)

1 x86_64-linux rebuild(s)
1 i686-linux rebuild(s)
1 x86_64-darwin rebuild(s)
1 aarch64-linux rebuild(s)

First fifty rebuilds by attrpath
SPAdes

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/aq8nrv3g89pk1qczk0vphx5i8zhd3k3w-SPAdes-3.14.0 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)
For the Cachix download to work, your user must be in the trusted-users list or you can use sudo since root is effectively trusted.

Or, build yourself:

nix-build -A SPAdes https://github.com/r-ryantm/nixpkgs/archive/3c54ae567945422ac1bb00a09b16e9ea51449fb4.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/aq8nrv3g89pk1qczk0vphx5i8zhd3k3w-SPAdes-3.14.0
ls -la /nix/store/aq8nrv3g89pk1qczk0vphx5i8zhd3k3w-SPAdes-3.14.0/bin

cc @bzizou for testing.

@bzizou
bzizou approved these changes Feb 5, 2020
@ryantm ryantm merged commit 67143ec into NixOS:master Feb 5, 2020
16 checks passed
16 checks passed
SPAdes on aarch64-linux Failure
Details
Evaluation Performance Report Evaluator Performance Report
Details
SPAdes on x86_64-darwin Success
Details
SPAdes on x86_64-linux Success
Details
grahamcofborg-eval ^.^!
Details
grahamcofborg-eval-check-maintainers matching changed paths to changed attrs...
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grahamcofborg-eval-check-meta config.nix: checkMeta = true
Details
grahamcofborg-eval-darwin nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A darwin-tested
Details
grahamcofborg-eval-nixos nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./nixos/release-combined.nix -A tested
Details
grahamcofborg-eval-nixos-manual nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./nixos/release.nix -A manual
Details
grahamcofborg-eval-nixos-options nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./nixos/release.nix -A options
Details
grahamcofborg-eval-nixpkgs-manual nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A manual
Details
grahamcofborg-eval-nixpkgs-tarball nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A tarball
Details
grahamcofborg-eval-nixpkgs-unstable-jobset nix-instantiate --arg nixpkgs { outPath=./.; revCount=999999; shortRev="ofborg"; } ./pkgs/top-level/release.nix -A unstable
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grahamcofborg-eval-package-list nix-env -qa --json --file .
Details
grahamcofborg-eval-package-list-no-aliases nix-env -qa --json --file . --arg config { allowAliases = false; }
Details
@r-ryantm r-ryantm deleted the r-ryantm:auto-update/SPAdes branch Feb 6, 2020
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