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r-modules: bioc and cran update #95836

Merged
merged 1 commit into from Oct 20, 2020
Merged

r-modules: bioc and cran update #95836

merged 1 commit into from Oct 20, 2020

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@jbedo
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@jbedo jbedo commented Aug 20, 2020

Motivation for this change

Major motivation was to update Bioconductor from 3.8 to 3.11. Nixpkgs has R 4.0 and the corresponding release for Bioconductor is 3.11 (see https://www.bioconductor.org/about/release-announcements/).

Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option sandbox in nix.conf on non-NixOS linux)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Determined the impact on package closure size (by running nix path-info -S before and after)
  • Ensured that relevant documentation is up to date
  • Fits CONTRIBUTING.md.
@jbedo
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@jbedo jbedo commented Sep 21, 2020

Bioconductor is broken without fixing the version match, is there anything further I can do to move this along?

@peti peti merged commit 97d0eb5 into NixOS:master Oct 20, 2020
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2 participants