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  • xgxr

    R package for supporting exploratory graphics at http://opensource.nibr.com/xgx

    R 0 1 2 0 Updated Sep 20, 2019
  • xgx

    Exploratory Graphics for PKPD data

    HTML 2 5 1 0 Updated Sep 19, 2019
  • cellxgene-gateway

    Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

    Python Apache-2.0 1 3 1 0 Updated Sep 19, 2019
  • sidtoolbox

    Subgroup identification toolbox

    R MIT 0 1 0 0 Updated Sep 16, 2019
  • patprofile

    Standard patient profile for shiny apps

    R MIT 0 3 0 0 Updated Sep 3, 2019
  • mvAC50

    AC50 potencies from multivariate assay readouts like gene signatures

    R Apache-2.0 0 0 0 0 Updated Sep 2, 2019
  • requests

    Request interface for Novartis Open Source

    0 0 0 0 Updated Aug 13, 2019
  • YADA

    Open-source Data Ops

    JavaScript Apache-2.0 14 66 27 1 Updated Aug 9, 2019
  • xgx_v1

    Version 1 of xgx. This version does not require the xgxr package

    HTML 0 0 0 0 Updated Jul 8, 2019
  • scRNAseq_workflow_benchmark

    Workflow for the analysis fo single-cell RNASeq data using R/bioconductor

    R Apache-2.0 1 3 0 0 Updated Jun 3, 2019
  • CellSIUS

    CellSIUS: Cell Subtype Identification from Upregulated gene Sets

    R Apache-2.0 1 2 0 0 Updated Jun 3, 2019
  • peax

    Peax is a tool for interactive concept learning and exploration of epigenomic patterns based on unsupervised featurization with autoencoders

    Jupyter Notebook 3 19 1 0 Updated Apr 22, 2019
  • mueller_et_al_2018

    Processed data relating to Continuous monitoring of patient mobility for 18 months using inertial sensors following traumatic knee injury: a case study Mueller A., Hoefling H., Nuritdinow T., et al. Paper: http://doi.org/10.1159/000490919 Raw data: http://doi.org/10.5281/zenodo.1443190

    Apache-2.0 1 1 0 0 Updated Oct 3, 2018
  • MonolixIdent

    Monolix identifiability assessment R package for generating likelihood profiles (LLPs) and likelihood waterfalls (LLW) using Batchtools for parallelization.

    0 0 0 0 Updated Sep 28, 2018
  • Cell-Quant

    Iba1+ cells in the PEC are generally sparsely distributed around the posterior eye cup, but manual quantification of these cells is time consuming. Therefore we developed a second semi-automated MatLab code to quantify single Iba1+ cells. The operator is presented with masked, randomized images and allowed to remove non-specific fluorescence (fa…

    MATLAB Apache-2.0 0 0 0 0 Updated Sep 24, 2018
  • CNV-Analysis

    Confluent and overlapping cells are difficult to quantify in low power images. This MatLab code allows a user to analyze the pixel intensity (integrated density) over a region of interest (ROI) in low power images as a surrogate for cell number. This code was optimized for use in our Choroidal Neovascularization model, and allows for the analysi…

    MATLAB Apache-2.0 0 0 0 0 Updated Sep 24, 2018
  • ontobrowser

    OntoBrowser is a web-based application for managing ontologies

    Java Apache-2.0 4 8 2 0 Updated Apr 30, 2018
  • hpath

    An ontology of histopathological morphologies

    Apache-2.0 1 4 1 0 Updated Apr 24, 2018
  • Jenkins-LSCI-Jobs

    Jenkins jobs that support a variety of life science applications (data management, data transformations, analysis, computational workflows etc.)

    Groovy Apache-2.0 0 0 0 0 Updated Mar 29, 2018
  • YADA-Quickstart

    YADA is like a Universal Remote Control for data.

    HTML Apache-2.0 1 0 0 0 Updated Feb 12, 2018
  • Project-Mona-Lisa

    Project Mona Lisa (PML): Machine-learning Assisted Diagramming Platform

    JavaScript Apache-2.0 1 2 0 0 Updated Oct 17, 2017
  • C Apache-2.0 13 2 1 0 Updated Sep 28, 2017
  • JavaScript Apache-2.0 0 1 0 0 Updated Aug 18, 2017
  • Jenkins-LSCI

    Jenkins for Life Science Continuous Integration

    Groovy 3 10 1 0 Updated Apr 28, 2017
  • yap

    High throughput, pain-free big data pipelines.

    Python Apache-2.0 6 29 1 1 Updated Mar 11, 2017
  • JavaScript Apache-2.0 1 2 0 0 Updated Sep 27, 2016
  • EQP-QM

    Unix based RNA-seq quantification module

    Java Apache-2.0 0 3 0 0 Updated May 6, 2016
  • habitat

    "Where files live" - Simple object management system using AWS S3 and Elasticsearch Service to manage objects and their metadata

    Python Apache-2.0 3 5 0 0 Updated May 3, 2016
  • toolscore

    Script and example data for "Evidence-Based and Quantitative Prioritization of Tool Compounds in Phenotypic Drug Discovery"

    R Apache-2.0 1 5 0 0 Updated Apr 29, 2016
  • EQP-cluster

    Unix-based RNA-seq quantification pipeline

    Java Apache-2.0 2 10 1 0 Updated Nov 18, 2015

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