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  1. tidymodules tidymodules Public

    An Object-Oriented approach to Shiny modules

    R 141 11

  2. YADA YADA Public

    Open-source Data Ops

    Java 81 21

  3. peax peax Public

    Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

    Jupyter Notebook 67 14

  4. cellxgene-gateway cellxgene-gateway Public

    Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

    Python 52 32

  5. scar scar Public

    scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics

    Python 44 4

  6. torchsurv torchsurv Public

    Deep survival analysis made easy

    Python 42 6

Repositories

Showing 10 of 87 repositories
  • dpasurv Public

    An R-package for performing dynamic path analysis on survival data with estimation of the corresponding direct, indirect, and total effects.

    Novartis/dpasurv’s past year of commit activity
    R 1 MIT 0 0 1 Updated Jun 21, 2024
  • peakCombiner Public

    The fully R based tool peakCombiner is a user-friendly, transparent, modular and customizable package with the purpose to create a consensus peak file from genomic input regions. The aim is to allow even novice R users to create good quality combined peak sets to be used as the starting point for most downstream differential analyses.

    Novartis/peakCombiner’s past year of commit activity
    R 3 1 0 1 Updated Jun 11, 2024
  • Causal-inference-in-RCTs Public

    This repository contains code examples for several methods in a Causal Inference in RCTs short course.

    Novartis/Causal-inference-in-RCTs’s past year of commit activity
    R 18 MIT 0 0 0 Updated Jun 7, 2024
  • bamdd Public

    Applied modelling in drug development: flexible Bayesian regression modelling in Stan via brms

    Novartis/bamdd’s past year of commit activity
    TeX 14 GPL-2.0 2 0 0 Updated Jun 5, 2024
  • scar Public

    scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics

    Novartis/scar’s past year of commit activity
    Python 44 4 0 0 Updated May 28, 2024
  • pisces Public

    PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

    Novartis/pisces’s past year of commit activity
    Python 28 Apache-2.0 3 11 0 Updated May 28, 2024
  • scOTGM Public

    This is the official codebase for "sc-OTGM: Single-Cell Perturbation Modeling by Solving Optimal Mass Transport on the Manifold of Gaussian Mixtures"

    Novartis/scOTGM’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 17, 2024
  • WATCH Public

    An R-repository to implement a double robust version of the WATCH workflow published in Sechidis et al. (2024)

    Novartis/WATCH’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 17, 2024
  • dWIZGenomics Public

    Provides the code used to reproduce the figures containing the genomic data for the publication "A molecular glue degrader of the WIZ transcription factor for fetal hemoglobin induction"

    Novartis/dWIZGenomics’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated May 2, 2024
  • torchsurv Public

    Deep survival analysis made easy

    Novartis/torchsurv’s past year of commit activity
    Python 42 MIT 6 4 1 Updated Apr 29, 2024