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d0b5eb8 Sep 14, 2018
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@cmungall @rvita
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layout id contact description domain homepage page license publications products title dependencies usages jobs build tracker
ontology_detail
envo
email label github
p.buttigieg@gmail.com
Pier Luigi Buttigieg
pbuttigieg
Ontology of environmental features and habitats
environment
id title
The environment ontology: contextualising biological and biomedical entities
id title
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation
id
envo.owl
id
envo.obo
id title
subsets/envo-basic.obo
OBO-Basic edition of ENVO
id title homepage
subsets/EnvO-Lite-GSC.obo
GSC Lite subset of ENVO
Environment Ontology
id
uberon
id
pco
id
ro
id
chebi
id
ncbitaxon
user description example
Samples collected during Tara Oceans expedition are annotated with ENVO
url description
Sample collected during the Tara Oceans expedition (2009-2013) at station TARA_004 (latitudeN=36.5533, longitudeE=-6.5669)
user description example
Annotation of habitats of microbes
url description
Annotation of habitat of Pseudovibrio sp. FO-BEG1 to marine environment
checkout email_cc system path method infallible
cjmungall@lbl.gov
git
.
vcs
1

EnvO is a community ontology for the concise, controlled description of environments.

Envo can be cited as:

Buttigieg, P. L., Morrison, N., Smith, B., Mungall, C. J., & Lewis, S. E. (2013). The environment ontology: contextualising biological and biomedical entities. Journal of Biomedical Semantics, 4(1), 43. doi:10.1186/2041-1480-4-43

Or for latest developments:

Buttigieg, P. L., Pafilis, E., Lewis, S. E., Schildhauer, M. P., Walls, R. L., & Mungall, C. J. (2016). The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. Journal of Biomedical Semantics, 7(1), 57. doi:10.1186/s13326-016-0097-6