pato.md

layout	id	title	browsers	contact	description	domain	homepage	in_foundry_order	license	preferredPrefix	products	publications	repository	tracker	usages	activity_status
ontology_detail	pato	Phenotype And Trait Ontology	title label url BioPortal Ontology Browser BioPortal https://bioportal.bioontology.org/ontologies/PATO	email github label orcid g.gkoutos@gmail.com gkoutos George Gkoutos 0000-0002-2061-091X	An ontology of phenotypic qualities (properties, attributes or characteristics)	phenotype	https://github.com/pato-ontology/pato/	1	label url CC BY 3.0 http://creativecommons.org/licenses/by/3.0/	PATO	id pato.owl id pato.obo id pato.json id description pato/pato-base.owl Includes axioms linking to other ontologies, but no imports of those ontologies	id title https://www.ncbi.nlm.nih.gov/pubmed/28387809 The anatomy of phenotype ontologies: principles, properties and applications id title https://www.ncbi.nlm.nih.gov/pubmed/15642100 Using ontologies to describe mouse phenotypes	https://github.com/pato-ontology/pato	https://github.com/pato-ontology/pato/issues	description examples publications type user PATO is used by the Human Phenotype Ontology (HPO) for logical definitions of phenotypes that facilitate cross-species integration. description url An abnormality in a cellular process. https://www.ebi.ac.uk/ols/ontologies/hp/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FHP_0011017&viewMode=All&siblings=false id title https://www.ncbi.nlm.nih.gov/pubmed/30476213 Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources annotation https://hpo.jax.org/app/	active

Phenotypic qualities (properties). This ontology can be used in conjunction with other ontologies such as GO or anatomical ontologies to refer to phenotypes. Examples of qualities are red, ectopic, high temperature, fused, small, edematous and arrested.