From 7bad00ad9cb6ebb04aaab7010a048278543321f8 Mon Sep 17 00:00:00 2001
From: Fabien Maussion <fabien.maussion@uibk.ac.at>
Date: Thu, 20 Jun 2019 18:17:18 +0200
Subject: [PATCH] Try full conda

---
 binder/environment.yml  | 52 +++++++++++++++++++++++++++++++++++++++++
 binder/postBuild        | 31 ++----------------------
 binder/requirements.txt | 20 ----------------
 3 files changed, 54 insertions(+), 49 deletions(-)
 create mode 100644 binder/environment.yml
 delete mode 100644 binder/requirements.txt

diff --git a/binder/environment.yml b/binder/environment.yml
new file mode 100644
index 0000000..6fbb8db
--- /dev/null
+++ b/binder/environment.yml
@@ -0,0 +1,52 @@
+name: oggm
+channels:
+  - conda-forge
+dependencies:
+  - python=3.6
+  - jupyter
+  - jupyterlab
+  - jupyterhub
+  - bokeh
+  - nbserverproxy
+  - ipywidgets
+  - graphviz
+  - numpy
+  - scipy
+  - pandas
+  - shapely
+  - matplotlib
+  - Pillow
+  - netcdf4
+  - scikit-image
+  - scikit-learn
+  - configobj
+  - xarray
+  - pytest
+  - dask
+  - bottleneck
+  - pyproj
+  - cartopy
+  - geopandas
+  - rasterio
+  - pyviz_comms
+  - bokeh
+  - param
+  - holoviews
+  - hvplot
+  - geoviews
+  - panel
+  - parambokeh
+  - datashader
+  - descartes
+  - seaborn
+  - ipympl
+  - pip
+  - pip:
+    - joblib
+    - progressbar2
+    - motionless
+    - nbgitpuller
+    - git+https://github.com/fmaussion/salem.git
+    - git+https://github.com/OGGM/oggm.git
+    - git+https://github.com/OGGM/oggm-edu.git
+    - git+https://github.com/retostauffer/python-colorspace
diff --git a/binder/postBuild b/binder/postBuild
index 7e21b74..ab4d197 100644
--- a/binder/postBuild
+++ b/binder/postBuild
@@ -1,42 +1,15 @@
 #!/bin/bash
 
-# Add packages
-pip install gdal=="$(gdal-config --version)" --install-option="build_ext" --install-option="$(gdal-config --cflags | sed 's/-I/--include-dirs=/')"
-pip install fiona --install-option="build_ext" --install-option="$(gdal-config --cflags | sed 's/-I/--include-dirs=/')"
-pip install pyproj
-pip install cython
-pip install cartopy
-pip install geopandas
-pip install rasterio
-pip install pyviz_comms
-pip install bokeh
-pip install param
-pip install holoviews
-pip install hvplot
-pip install geoviews
-pip install pyct
-pip install panel
-pip install parambokeh
-pip install datashader
-pip install descartes
-pip install seaborn
-pip install git+https://github.com/fmaussion/salem.git
-pip install git+https://github.com/OGGM/oggm.git
-pip install git+https://github.com/OGGM/oggm-edu.git
-pip install git+https://github.com/retostauffer/python-colorspace
+# serverextensions
+jupyter serverextension enable --sys-prefix --py nbserverproxy
 
 # Jupyterlab
-pip install jupyterlab==0.35.4
-pip install ipympl
 jupyter labextension install @jupyter-widgets/jupyterlab-manager
 jupyter labextension install jupyter-matplotlib
 jupyter labextension install jupyterlab_bokeh
 jupyter labextension install @pyviz/jupyterlab_pyviz
 jupyter serverextension enable --py nbgitpuller --sys-prefix
 
-# Jupyter Hub - for cluster
-pip install jupyterhub==0.9.6
-
 # Add funny font
 mkdir ~/.fonts
 wget http://antiyawn.com/uploads/Humor-Sans-1.0.ttf
diff --git a/binder/requirements.txt b/binder/requirements.txt
deleted file mode 100644
index b248ac0..0000000
--- a/binder/requirements.txt
+++ /dev/null
@@ -1,20 +0,0 @@
-numpy
-scipy
-pandas
-shapely
-matplotlib
-Pillow
-netcdf4
-scikit-image
-scikit-learn
-configobj
-joblib
-xarray
-boto3
-progressbar2
-pytest
-motionless
-dask
-bottleneck
-ipython
-nbgitpuller