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Cdm to cdm #69

Merged
merged 25 commits into from
May 14, 2024
Merged

Cdm to cdm #69

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039d555
Added CDM to CDM builder
bradanton Apr 25, 2024
d851db9
hot fixes
bradanton Apr 25, 2024
8f972ee
hot fixes
bradanton Apr 25, 2024
8c83ff5
Update Batch.sql
bradanton Apr 25, 2024
9f5b7ca
hot fixes
bradanton Apr 25, 2024
43f30bf
hot fixes
bradanton Apr 26, 2024
20f29b3
Update CdmPersonBuilder.cs
bradanton Apr 26, 2024
3eaf8a4
upd
bradanton Apr 26, 2024
2786609
fixes
bradanton Apr 27, 2024
f0e5315
Update CdmPersonBuilder.cs
bradanton Apr 27, 2024
1296a87
Update CdmPersonBuilder.cs
bradanton Apr 27, 2024
841e9f6
Update CdmPersonBuilder.cs
bradanton Apr 27, 2024
48b723d
Update Batch.sql
bradanton Apr 30, 2024
4e88a7c
drug_era fix
bradanton Apr 30, 2024
4c7f4c8
Update CdmPersonBuilder.cs
bradanton Apr 30, 2024
6a0dd9c
Update Batch.sql
bradanton Apr 30, 2024
631a0de
added idc10 and loinc vocabs
bradanton May 1, 2024
b64c3d1
Update CdmPersonBuilder.cs
bradanton May 2, 2024
18205c2
Update ConceptIdToSourceVocabularyId.sql
bradanton May 2, 2024
2e53178
domain update for custom conceptId added
bradanton May 2, 2024
6214675
get domain fix
bradanton May 2, 2024
33ea61f
Update ConceptIdToSourceVocabularyId.sql
bradanton May 2, 2024
fb78f80
grr lookup was added
bradanton May 13, 2024
ce11d91
Update CdmPersonBuilder.cs
bradanton May 13, 2024
64c23b2
Merge branch 'master' into cdm-to-cdm
bradanton May 14, 2024
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2 changes: 1 addition & 1 deletion sources/Framework/org.ohdsi.cdm.framework.common3/Builder/KeyMasterOffsetManager.cs
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Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ public KeyMasterOffset GetKeyOffset(long personId)
return KeyOffsets[personIndex];
}

private int GetPersonIndex(long personId)
public int GetPersonIndex(long personId)
{
if (PersonIndexes.TryAdd(personId, 0))
{
Expand Down
3 changes: 3 additions & 0 deletions .../Framework/org.ohdsi.cdm.framework.common3/Core/Lookups/ConceptIdToSourceVocabularyId.sql
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Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
SELECT distinct concept_id, vocabulary_id, domain_id
FROM {sc}.concept
where domain_id in ('Condition', 'Device', 'Drug', 'Measurement', 'Observation', 'Procedure');
3 changes: 3 additions & 0 deletions sources/Framework/org.ohdsi.cdm.framework.common3/Core/Transformation/CDM/Batch.sql
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@@ -0,0 +1,3 @@
SELECT DISTINCT PERSON_ID, PERSON_ID
FROM {sc}.PERSON
order by 1;