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JCdmBuilder

The JCdmBuilder is a Java program that offers various tools that can be used when contructing a data in the OMOP Common Data Model (CDM). It can also be used to transform some specific observational datasets from their native formats and schemas into the CDM.

Features

  • This builder supports the following ETLs:
    • Healthcare Cost and Utilization Project (HCUP) - Nationwide Inpatient Sample (NIS) to CDM version 4
    • Healthcare Cost and Utilization Project (HCUP) - Nationwide Inpatient Sample (NIS) to CDM version 5
  • You can also load data in CDM format from CSV files into the database
  • Creating the database structure and indices for CDM versions 4 or 5
  • Loading the vocabulary from files into the database
  • Automatically creating condition and drug eras
  • Supports SQL Server, Oracle and PostgreSQL
  • Command line interface for automated execution

Screenshot

JCdmBuilder

Technology

JCdmBuilder is a Java program.

System Requirements

  • Java

Dependencies

None

Getting Started

  1. Under the Releases tab, download the latest JCDMBuilder jar file.
  2. Double-click on the jar file to start the application.

There is also a command-line-interface. Type java -jar JCDMBuilder_v?.?.?.jar -usage for more information.

Getting Involved

License

JCdmBuilder is licensed under Apache License 2.0

Development

Development status

Alpha

Acknowledgements

Janssen Pharmaceutical Research & Development, LLC

About

JCdmBuilder is a Java program that can be used to transform observational datasets from their native formats and schemas into the OMOP Common Data Model.

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