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Jordan Anaya
Jordan Anaya fixed parsing.py bug
Latest commit 2691bc0 Mar 28, 2016
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bugs fixed parsing.py bug Mar 28, 2016
cdf.py first commit Mar 22, 2016
dictionaries.py fixed parsing.py bug Mar 28, 2016
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parsing.py fixed parsing.py bug Mar 28, 2016
proteomicsdb.py first commit Mar 22, 2016

README.md

This repository contains various scripts from omnesres.com.

cdf.py will make cdf plots with matplotlib and goes with this post: http://www.omnesres.com/tools/cdf/

kaplan.py will make Kaplan-Meier plots with Python and goes with this post: http://www.omnesres.com/tools/kaplan/ and this youtube video: https://www.youtube.com/watch?v=cPEXL1YuhAk

proteomicsdb.py will download data from proteomicsdb and parse for phosphate modifications. It goes with this post: http://www.omnesres.com/research/proteomicsdb/ and this video: https://www.youtube.com/watch?v=to8-v0kOr4w

neoantigens.py will parse MAF files and identify peptides that are altered (neoantigens). A post is available here: http://www.omnesres.com/research/neoantigens/ and a video is available here: https://www.youtube.com/watch?v=y2CU352YlsU

find_adaptor.py is a short script for finding small RNA adaptor sequences. Post available here: http://www.omnesres.com/tools/adaptors/ video here: https://www.youtube.com/watch?v=Wwiu0NE3mDE

parsing.py and dictionaries.py go together, and will convert a genbank full file into a useful Python dictionary. Post available here: http://www.omnesres.com/tools/nucleotide/ and video available here: https://www.youtube.com/watch?v=3kV1movMitQ