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.gitignore
app.py
json_spacy.ipynb
readme.md
requirements.txt

readme.md

Installation / Running

  • It's in /mnt/storage/karr/projects/clontogene/blah5
  • Install pip install -r requirements.txt
  • python -m spacy download en`

Use

  • curl -F file='@data/6234315.json' http://0.0.0.0:61455/ > out.json
  • PubAnnotation style: curl -d text="example text" https://pub.cl.uzh.ch/projects/ontogene/blah5/

Querying OGER

  • curl -d "@filename" https://pub.cl.uzh.ch/projects/ontogene/oger/upload/txt/pubanno_json

To Do

  • Test integration with PubAnnotation
  • Automatically get OGER annos
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