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Commits on Nov 22, 2015
  1. @chrispbradley

    Merge pull request #103 from chrispbradley/master

    chrispbradley committed Nov 22, 2015
    Fixing up some missed examples.
Commits on Nov 18, 2015
  1. @chrispbradley

    Merge pull request #104 from OpenCMISS/daniel_updates

    chrispbradley committed Nov 18, 2015
    Preparation for example migration
Commits on Nov 16, 2015
  1. @rondiplomatico

    removed unnecessary files

    rondiplomatico committed Nov 16, 2015
  2. @rondiplomatico
  3. @rondiplomatico

    Merge remote-tracking branch 'origin/master'

    rondiplomatico committed Nov 16, 2015
    Had a lot of conflicts as minor changes were made by me (#NOMPIMOD preproc directives) and others (renamings)
    
    Conflicts:
    	42TestingPoints/SinglePhysics/LinearProblems/StaticProblems/Stokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/100k/src/100kExample.f90
    	42TestingPoints/SinglePhysics/LinearProblems/StaticProblems/Stokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/10k/src/10kExample.f90
    	42TestingPoints/SinglePhysics/LinearProblems/StaticProblems/Stokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/1k/src/1kExample.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/QUAD/CubicVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/QUAD/CubicVelocityQuadraticPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/QUAD/QuadraticVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/TRI/CubicVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/TRI/CubicVelocityQuadraticPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/2D/TRI/QuadraticVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/HEX/CubicVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/HEX/CubicVelocityQuadraticPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/TET/CubicVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/TET/CubicVelocityQuadraticPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/DynamicProblems/NavierStokes/3D/TET/QuadraticVelocityLinearPressure/LEVEL_2/src/LEVEL_2Example.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/StaticProblems/NavierStokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/100k/src/100kExample.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/StaticProblems/NavierStokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/10k/src/10kExample.f90
    	42TestingPoints/SinglePhysics/NonlinearProblems/StaticProblems/NavierStokes/3D/HEX/QuadraticVelocityLinearPressure/LEVEL_3/1k/src/1kExample.f90
    	Bioelectrics/Bidomain/src/BidomainExample.f90
    	Bioelectrics/Monodomain/Fortran/src/FortranExample.f90
    	Bioelectrics/MonodomainBuenoOrovio/src/MonodomainBuenoOrovioExample.f90
    	Bioelectrics/MonodomainCUDA/src/MonodomainCUDAExample.f90
    	Bioelectrics/MonodomainTP06/src/MonodomainTP06Example.f90
    	Bioelectrics/Monodomain_Shiqiang/src/Monodomain_ShiqiangExample.f90
    	ClassicalField/AdvectionDiffusion/AdvectionDiffusionIO/src/AdvectionDiffusionIOExample.f90
    	ClassicalField/AdvectionDiffusion/AdvectionDiffusionIO_ALE/src/AdvectionDiffusionIO_ALEExample.f90
    	ClassicalField/AdvectionDiffusion/AdvectionDiffusionIO_BCs/src/AdvectionDiffusionIO_BCsExample.f90
    	ClassicalField/AdvectionDiffusion/StaticAdvectionDiffusion/src/StaticAdvectionDiffusionExample.f90
    	ClassicalField/AdvectionDiffusion/StaticAdvectionDiffusionSUPG/src/StaticAdvectionDiffusionSUPGExample.f90
    	ClassicalField/Diffusion/CubicConvergenceTest/src/CubicConvergenceTestExample.f90
    	ClassicalField/Diffusion/Diffusion/src/DiffusionExample.f90
    	ClassicalField/Diffusion/DiffusionConstantSource/src/DiffusionConstantSourceExample.f90
    	ClassicalField/Diffusion/DiffusionIO_ALE/src/DiffusionIO_ALEExample.f90
    	ClassicalField/Diffusion/DiffusionLinearSource/src/DiffusionLinearSourceExample.f90
    	ClassicalField/Diffusion/LinearConvergenceTest/src/LinearConvergenceTestExample.f90
    	ClassicalField/Diffusion/QuadraticConvergenceTest/src/QuadraticConvergenceTestExample.f90
    	ClassicalField/Helmholtz/AnalyticHelmholtz/src/AnalyticHelmholtzExample.f90
    	ClassicalField/Helmholtz/Helmholtz/src/HelmholtzExample.f90
    	ClassicalField/Laplace/AnalyticLaplace/src/AnalyticLaplaceExample.f90
    	ClassicalField/Laplace/Embedded1DLaplace/src/Embedded1DLaplaceExample.f90
    	ClassicalField/Laplace/Embedded2DLaplace/src/Embedded2DLaplaceExample.f90
    	ClassicalField/Laplace/GeneralisedLaplace/Fortran/src/FortranExample.f90
    	ClassicalField/Laplace/GeneralisedLaplace/Fortran/src/FortranExample_2D_testproblem.f90
    	ClassicalField/Laplace/GeneralisedLaplace/Fortran/src/FortranExample_3D_testproblem.f90
    	ClassicalField/Laplace/GeneralisedLaplace/Fortran/src/FortranExample_3D_tests.f90
    	ClassicalField/Laplace/Laplace/Fortran/src/FortranExample.f90
    	ClassicalField/Laplace/LaplaceEllipsoid/src/LaplaceEllipsoidExample.f90
    	ClassicalField/Laplace/LaplaceEllipsoid_FieldML/src/LaplaceEllipsoid_FieldMLExample.f90
    	ClassicalField/Laplace/NumberLaplace/src/NumberLaplaceExample.f90
    	ClassicalField/Poisson/AnalyticNonlinearPoisson/src/AnalyticNonlinearPoissonExample.f90
    	ClassicalField/Poisson/ExtracellularBidomain/Fortran/src/FortranExample.f90
    	ClassicalField/Poisson/NonlinearPoisson/src/NonlinearPoissonExample.f90
    	ClassicalField/ReactionDiffusion/CellMLSplitReactionDiffusion1D/src/CellMLSplitReactionDiffusion1DExample.f90
    	ClassicalField/ReactionDiffusion/ReactionDiffusionConstantSource1D/src/ReactionDiffusionConstantSource1DExample.f90
    	ClassicalField/ReactionDiffusion/ReactionDiffusionNoSource1D/src/ReactionDiffusionNoSource1DExample.f90
    	DataAssimilation/DataAssimilationInflationGuccione/src/DataAssimilationInflationGuccioneExample.f90
    	DataAssimilation/DataAssimilationUniExtension/src/UniAxialExtensionExample.f90
    	DataProjection/1DRectangularCartesian/src/1DRectangularCartesianExample.f90
    	DataProjection/2DRectangularCartesian/src/2DRectangularCartesianExample.f90
    	DataProjection/3DRectangularCartesian/src/3DRectangularCartesianExample.f90
    	EmbeddedMesh/EmbeddedMeshBasic/src/EmbeddedMeshBasicExample.f90
    	EmbeddedMesh/EmbeddedMeshBasicWithMap/src/EmbeddedMeshBasicWithMapExample.f90
    	FiniteElasticity/ActiveContraction/src/ActiveContractionExample.f90
    	FiniteElasticity/Cantilever/Fortran/src/FortranExample.f90
    	FiniteElasticity/CuboidGeneric/src/CuboidGenericExample.f90
    	FiniteElasticity/CylinderInflation/src/CylinderInflationExample.f90
    	FiniteElasticity/LargeUniAxialExtension/Fortran/src/FortranExample.f90
    	FiniteElasticity/Membrane/MembraneExtension2DSpace/src/MembraneExtension2DSpaceExample.f90
    	FiniteElasticity/Membrane/MembraneExtension3DSpaceFlat/src/MembraneExtension3DSpaceFlatExample.f90
    	FiniteElasticity/Membrane/MembraneExtension3DSpaceTilted/src/MembraneExtension3DSpaceTiltedExample.f90
    	FiniteElasticity/MixedBoundaryConditions/src/MixedBoundaryConditionsExample.f90
    	FiniteElasticity/MooneyRivlinInCellML/src/MooneyRivlinInCellMLExample.f90
    	FiniteElasticity/QuadraticEllipsoid/src/QuadraticEllipsoidExample.f90
    	FiniteElasticity/QuadraticEllipsoidCosta/src/QuadraticEllipsoidCostaExample.f90
    	FiniteElasticity/QuadraticEllipsoidCostaReadIn/src/QuadraticEllipsoidCostaReadInExample.f90
    	FiniteElasticity/RightBiceps/Fortran/src/FortranExample.f90
    	FiniteElasticity/SimpleShear/Fortran/src/FortranExample.f90
    	FiniteElasticity/SimpleShear/Fortran/src/FortranExample_incomp.f90
    	FiniteElasticity/SimpleShear/Fortran/src/FortranExample_nearly.f90
    	FiniteElasticity/SimplexElements/LargeQuadraticTet/src/LargeQuadraticTetExample.f90
    	FiniteElasticity/SimplexElements/LinearTet/src/LinearTetExample.f90
    	FiniteElasticity/SimplexElements/QuadraticTet/src/QuadraticTetExample.f90
    	FiniteElasticity/TriCubicAxialExtension/src/TriCubicAxialExtensionExample.f90
    	FiniteElasticity/TriQuadraticCube/src/TriQuadraticCubeExample.f90
    	FiniteElasticity/UniAxialExtension/Fortran/src/FortranExample.f90
    	FiniteElasticity/UniAxialExtensionCompressible/src/UniAxialExtensionCompressibleExample.f90
    	FiniteElasticity/UniAxialExtensionLoadIncrements/src/UniAxialExtensionLoadIncrementsExample.f90
    	FiniteElasticity/UniAxialExtensionOrthotropic/src/UniAxialExtensionOrthotropicExample.f90
    	FiniteElasticity/testingPoints/src/testingPointsExample.f90
    	FluidMechanics/Burgers/Burgers/src/BurgersExample.f90
    	FluidMechanics/Burgers/GeneralisedBurgers/src/GeneralisedBurgersExample.f90
    	FluidMechanics/Burgers/StaticBurgers/src/StaticBurgersExample.f90
    	FluidMechanics/Darcy/Analytic/src/AnalyticExample.f90
    	FluidMechanics/Darcy/Dynamic/src/DynamicExample.f90
    	FluidMechanics/Darcy/Static/src/StaticExample.f90
    	FluidMechanics/Darcy/temp_memory_issue/src/temp_memory_issueExample.f90
    	FluidMechanics/NavierStokes/42Master/src/42MasterExample.f90
    	FluidMechanics/NavierStokes/Poiseuille/2DChannel/Static/src/StaticExample.f90
    	FluidMechanics/NavierStokes/RoutineCheck/Dynamic/src/DynamicExample.f90
    	FluidMechanics/NavierStokes/RoutineCheck/ParallelDynamic/src/ParallelDynamicExample.f90
    	FluidMechanics/NavierStokes/RoutineCheck/ParallelStatic/src/ParallelStaticExample.f90
    	FluidMechanics/NavierStokes/RoutineCheck/Static/src/StaticExample.f90
    	FluidMechanics/NavierStokes/Static_FieldML/src/Static_FieldMLExample.f90
    	FluidMechanics/NavierStokes/SupgChannel/src/SupgChannelExample.f90
    	FluidMechanics/NavierStokes/temp_tests/DynamicTest_theta_0.5/src/DynamicTest_theta_0.5Example.f90
    	FluidMechanics/NavierStokes/temp_tests/DynamicTest_theta_1.0/src/DynamicTest_theta_1.0Example.f90
    	FluidMechanics/Poiseuille/Static/src/StaticExample.f90
    	FluidMechanics/SCRATCH/DynamicNavierStokesInParallel/src/DynamicNavierStokesInParallelExample.f90
    	FluidMechanics/Stokes/42Master/src/42MasterExample.f90
    	FluidMechanics/Stokes/RoutineCheck/Dynamic/src/DynamicExample.f90
    	FluidMechanics/Stokes/RoutineCheck/Static/src/StaticExample.f90
    	InterfaceExamples/CoupledFluidSolid/Fortran/src/FortranExample.f90
    	InterfaceExamples/UnCoupledLaplace/src/UnCoupledLaplaceExample.f90
    	LagrangeSimplexMesh/src/LagrangeSimplexMeshExample.f90
    	LinearElasticity/2DExtensionPlaneStressLagrangeBasis/src/2DExtensionPlaneStressLagrangeBasisExample.f90
    	LinearElasticity/3DExtensionHermiteBasis/src/3DExtensionHermiteBasisExample.f90
    	LinearElasticity/3DExtensionLagrangeBasis/src/3DExtensionLagrangeBasisExample.f90
    	LinearElasticity/Analytic/CantileverBeam/src/CantileverBeamExample.f90
    	LinearElasticity/Analytic/Extension/src/ExtensionExample.f90
    	Meshes/1DCubicHermite/src/1DCubicHermiteExample.f90
    	Meshes/MoreComplexMesh/src/MoreComplexMeshExample.f90
    	Meshes/MultipleMeshComponents/src/MultipleMeshComponentsExample.f90
    	Meshes/Simplex/Tetrahedral/Cubic/src/CubicExample.f90
    	Meshes/Simplex/Tetrahedral/Linear/src/LinearExample.f90
    	Meshes/Simplex/Tetrahedral/Quadratic/src/QuadraticExample.f90
    	Meshes/Simplex/Triangular/Cubic/src/CubicExample.f90
    	Meshes/Simplex/Triangular/Linear/src/LinearExample.f90
    	Meshes/Simplex/Triangular/Quadratic/src/QuadraticExample.f90
    	Meshes/Versions3DLaplace/src/Versions3DLaplaceExample.f90
    	MultiPhysics/BioelectricFiniteElasticity/GudunovMonodomainElasticity1D3DMesh/simple_geometry/src/simple_geometryExample.f90
    	MultiPhysics/BioelectricFiniteElasticity/GudunovMonodomainElasticity1D3DMesh/titin_10/src/titin_10Example.f90
    	MultiPhysics/BioelectricFiniteElasticity/GudunovMonodomainElasticity1D3DMesh/while_loop/src/while_loopExample.f90
    	MultiPhysics/BioelectricFiniteElasticity/GudunovMonodomainElasticitySameMesh/src/GudunovMonodomainElasticitySameMeshExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityDarcy/CylinderInflationDrivenDarcy/src/CylinderInflationDrivenDarcyExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityDarcy/CylinderInflationDrivenMultiCompDarcy/src/CylinderInflationDrivenMultiCompDarcyExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityDarcy/IncompressibleElasticityDrivenDarcy/src/IncompressibleElasticityDrivenDarcyExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityDarcy/QuadraticEllipsoidDrivenDarcy/src/QuadraticEllipsoidDrivenDarcyExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityDarcy/QuadraticEllipsoidDrivenMultiCompDarcy/src/QuadraticEllipsoidDrivenMultiCompDarcyExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityFluidPressure/Cantilever/src/CantileverExample.f90
    	MultiPhysics/Poroelasticity/FiniteElasticityFluidPressure/StaticExtension/src/StaticExtensionExample.f90
    	TwoRegions/src/TwoRegionsExample.f90
    	cellml/Fortran/src/FortranExample.f90
    	cellml/model-integration/Fortran/src/FortranExample.f90
    	define-geometry-and-export/src/define-geometry-and-exportExample.f90
    	simple-field-manipulation-direct-access/src/simple-field-manipulation-direct-accessExample.f90
Commits on Oct 13, 2015
  1. @chrispbradley
  2. @chrispbradley

    Merge pull request #102 from chrispbradley/master

    chrispbradley committed Oct 13, 2015
    Rename and API change for eqs and problem specification.
  3. @chrispbradley

    Fix merge conflicts

    chrispbradley committed Oct 13, 2015
  4. @chrispbradley

    Rename plus new API etc.

    chrispbradley committed Oct 13, 2015
Commits on Oct 6, 2015
  1. @chrispbradley

    Rename and other changes

    chrispbradley committed Oct 6, 2015
Commits on Oct 2, 2015
  1. @chrispbradley
Commits on Sep 20, 2015
  1. @chrispbradley

    Merge pull request #101 from chrispbradley/fegrowth

    chrispbradley committed Sep 20, 2015
    Adding Finite Elasticity Growth examples.
  2. @chrispbradley
  3. @chrispbradley
  4. @chrispbradley

    fixes

    chrispbradley committed Sep 20, 2015
  5. @chrispbradley
  6. @chrispbradley
  7. @chrispbradley

    Adding growth example

    chrispbradley committed Sep 20, 2015
Commits on Sep 19, 2015
  1. @chrispbradley
Commits on Sep 16, 2015
  1. @rondiplomatico

    replaced direct "USE MPI" calls by preprocessor defs to prepare for b…

    rondiplomatico committed Sep 16, 2015
    …uilds where mpi does not have a (compatible) module file.
Commits on Sep 1, 2015
  1. @chrispbradley

    Merge pull request #99 from dladd/LDC_reduce

    chrispbradley committed Sep 1, 2015
    Reduce size of nightly test for LDC; bugfixes for 1D0D example
Commits on Aug 18, 2015
  1. @dladd

    fixes for 1D0D Reymond validation example: turn off gravity, fix issu…

    dladd committed Aug 18, 2015
    …es with time scale and reference areas, improve result analysis script
Commits on Aug 17, 2015
  1. @chrispbradley

    Merge pull request #98 from el-tomo/master

    chrispbradley committed Aug 18, 2015
    right biceps active contraction example
Commits on Aug 7, 2015
  1. @el-tomo
  2. @el-tomo

    clean up

    el-tomo committed Aug 7, 2015
Commits on Aug 6, 2015
  1. @el-tomo
Commits on Aug 3, 2015
  1. @chrispbradley

    Merge pull request #97 from tyu011/master

    chrispbradley committed Aug 3, 2015
    Fixed the problem with wrong fails shown in parent node and invalid l…
Commits on Jul 31, 2015
  1. @tyu011
Commits on Jul 30, 2015
  1. @dladd

    reduce the size of the Navier-Stokes lid-driven cavity example so tha…

    dladd committed Jul 30, 2015
    …t the debug nightly test should take ~20 minutes.
Commits on Jul 27, 2015
  1. @chrispbradley

    Merge pull request #95 from el-tomo/master

    chrispbradley committed Jul 27, 2015
    changed the way the Dirichlet BCs are updated according to code review
Commits on Jul 24, 2015
  1. @chrispbradley

    Merge pull request #96 from tyu011/master

    chrispbradley committed Jul 24, 2015
    Add the path to the example construction to fix the leaf example exec…
  2. @tyu011
Commits on Jul 23, 2015
  1. @el-tomo

    clean up

    el-tomo committed Jul 23, 2015
  2. @el-tomo
  3. @el-tomo
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