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cwlVersion: v1.0
class: Workflow
id: reference file prep
requirements:
- class: StepInputExpressionRequirement
inputs:
zipped:
type: File
steps:
unzip_ref:
run: ./gzip.cwl
in:
zipped: zipped
out:
- unzipped
index_ref:
run: ./fai.cwl
in:
to_index: unzip_ref/unzipped
out:
- faidx
dict_ref:
run: ./dict.cwl
in:
to_dict: index_ref/faidx
out:
- dict
outputs:
prepped_ref:
type: File
secondaryFiles:
- ^.fai
- .dict
outputSource: dict_ref/dict
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