diff --git a/server/storage/test.sqlite b/server/storage/test.sqlite
index a09c885d5..d3b77d81a 100644
Binary files a/server/storage/test.sqlite and b/server/storage/test.sqlite differ
diff --git a/vis/js/actions/index.js b/vis/js/actions/index.js
index 0f2e16af2..46e430c79 100644
--- a/vis/js/actions/index.js
+++ b/vis/js/actions/index.js
@@ -60,27 +60,33 @@ export const preinitializeStore = (configObject) => ({
* Action for initializing the data that aren't known in advance.
* @param {Object} configObject the default_config.json + data_config.json
* @param {Object} contextObject the app context
- * @param {Array} dataArray the papers data
+ * @param {Array} papers the papers data array
+ * @param {Array} areas the areas data array
+ * @param {Array} streams the streams data array
*/
export const initializeStore = (
configObject,
contextObject,
- dataArray,
- streamData,
+ papers,
+ areas,
+ streams,
chartSize,
streamWidth,
streamHeight,
- listHeight
+ listHeight,
+ scalingFactors
) => ({
type: "INITIALIZE",
configObject,
contextObject,
- dataArray,
- streamData,
+ papers,
+ areas,
+ streams,
chartSize,
streamWidth,
streamHeight,
listHeight,
+ scalingFactors,
});
/**
diff --git a/vis/js/components/Streamgraph.js b/vis/js/components/Streamgraph.js
index 27e10b192..d42f52848 100644
--- a/vis/js/components/Streamgraph.js
+++ b/vis/js/components/Streamgraph.js
@@ -11,7 +11,6 @@ import {
getLabelPosition,
recalculateOverlappingLabels,
setTM,
- transformData,
} from "../utils/streamgraph";
import {
CHART_MARGIN,
@@ -37,15 +36,6 @@ class Streamgraph extends React.Component {
constructor(props) {
super(props);
- this.stack = d3.layout
- .stack()
- .offset("silhouette")
- .values((d) => d.values)
- .x((d) => d.date)
- .y((d) => d.value);
-
- this.nest = d3.nest().key((d) => d.key);
-
this.labelPositions = [];
}
@@ -71,16 +61,18 @@ class Streamgraph extends React.Component {
const { colors } = this.props;
const { width, height } = this.getDimensions();
- const parsedData = JSON.parse(this.props.data);
- const transformedData = transformData(parsedData);
- const streams = this.getStreams(transformedData);
-
const xScale = d3.time.scale().range([0, width]);
const yScale = d3.scale.linear().range([height, 0]);
const colorScale = d3.scale.ordinal().range(colors);
- xScale.domain(d3.extent(transformedData, (d) => d.date));
- yScale.domain([0, d3.max(transformedData, (d) => d.y0 + d.y)]);
+ const streams = this.props.streams;
+ const streamEntries = streams.reduce(
+ (l, stream) => [...l, ...stream.values],
+ []
+ );
+
+ xScale.domain(d3.extent(streamEntries, (d) => d.date));
+ yScale.domain([0, d3.max(streamEntries, (d) => d.y0 + d.y)]);
const area = d3.svg
.area()
@@ -94,7 +86,7 @@ class Streamgraph extends React.Component {
this.renderBackground(container, width, height);
this.renderStreams(container, streams, area, colorScale);
- this.renderAxes(container, parsedData, xScale, yScale, width, height);
+ this.renderAxes(container, streams, xScale, yScale, width, height);
this.renderLabels(container, xScale, yScale, width);
this.renderTooltip(container, xScale);
this.renderLineHelper(container);
@@ -159,19 +151,19 @@ class Streamgraph extends React.Component {
* Renders the graph axes using d3.
*
* @param {Object} container the d3 representation of #streamgraph-chart
- * @param {Object} parsedData the parsed JSON containing the streamgraph data
+ * @param {Object} streams the stream array
* @param {Function} xScale x coordinate scaling function
* @param {Function} yScale y coordinate scaling function
* @param {number} width graph width
* @param {number} height graph height
*/
- renderAxes(container, parsedData, xScale, yScale, width, height) {
+ renderAxes(container, streams, xScale, yScale, width, height) {
const xAxis = d3.svg
.axis()
.scale(xScale)
.orient("bottom")
.tickFormat(d3.time.format("%Y"))
- .ticks(d3.time.year, Math.ceil(parsedData.x.length / MAX_TICKS_X));
+ .ticks(d3.time.year, Math.ceil(streams.length / MAX_TICKS_X));
const yAxis = d3.svg
.axis()
@@ -509,28 +501,10 @@ class Streamgraph extends React.Component {
return { width, height };
}
-
- getStreams(transformedData) {
- const nestedEntries = this.nest.entries(transformedData);
- const streams = this.stack(nestedEntries);
-
- streams.forEach((stream) => {
- const firstTransformedEntry = transformedData.find(
- (t) => t.key === stream.key
- );
- if (!firstTransformedEntry) {
- stream.docIds = [];
- return;
- }
- stream.docIds = firstTransformedEntry.docIds;
- });
-
- return streams;
- }
}
const mapStateToProps = (state) => ({
- data: state.streamgraph.data,
+ streams: state.streamgraph.streams,
colors: state.streamgraph.colors,
width: state.chart.streamWidth,
height: state.chart.streamHeight,
diff --git a/vis/js/datamanagers/DataManager.js b/vis/js/datamanagers/DataManager.js
new file mode 100644
index 000000000..8dfa5e878
--- /dev/null
+++ b/vis/js/datamanagers/DataManager.js
@@ -0,0 +1,398 @@
+import $ from "jquery";
+import d3 from "d3";
+
+import {
+ getDiameterScale,
+ getInitialCoordsScale,
+ getCoordsScale,
+ getRadiusScale,
+} from "../utils/scale";
+import {
+ getAuthorsList,
+ getInternalMetric,
+ getListLink,
+ getOpenAccessLink,
+ getOutlink,
+ getVisibleMetric,
+ isOpenAccess,
+ parseCoordinate,
+} from "../utils/data";
+import { transformData } from "../utils/streamgraph";
+
+import DEFAULT_SCHEME from "../dataschemes/defaultScheme";
+import PaperSanitizer from "../utils/PaperSanitizer";
+
+const GOLDEN_RATIO = 2.6;
+
+class DataManager {
+ config = {};
+ paperProps = [];
+ // outputs
+ context = {};
+ papers = [];
+ scalingFactors = {};
+ streams = [];
+ areas = [];
+
+ constructor(config, scheme = DEFAULT_SCHEME) {
+ this.config = config;
+ this.paperProps = scheme;
+ }
+
+ parseData(backendData, chartSize) {
+ // initialize this.context
+ this.__parseContext(backendData);
+ // initialize this.papers
+ this.__parsePapers(backendData);
+ // initialize this.scalingFactors
+ this.__computeScalingFactors(this.papers.length);
+
+ if (!this.config.is_streamgraph) {
+ // scale this.papers based on the chart size
+ this.__scalePapers(chartSize);
+ // initialize this.areas
+ this.__parseAreas(backendData);
+ // scale this.areas based on the chart size
+ this.__scaleAreas(chartSize);
+ } else {
+ // initialize this.streams
+ this.__parseStreams(backendData);
+ }
+ }
+
+ __parseContext(backendData) {
+ this.context = {};
+ if (typeof backendData.context === "object") {
+ this.context = backendData.context;
+ }
+ if (typeof this.context.params === "string") {
+ this.context.params = JSON.parse(this.context.params);
+ }
+ }
+
+ __parsePapers(backendData) {
+ this.papers = this.__getPapersArray(backendData);
+
+ this.__sanitizePapers();
+
+ this.__processPapers();
+ }
+
+ // migrated from legacy code
+ __getPapersArray(backendData) {
+ if (this.config.show_context) {
+ if (typeof backendData.data === "string") {
+ return JSON.parse(backendData.data);
+ }
+ return backendData.data;
+ }
+ if (typeof backendData.data === "object") {
+ return backendData.data;
+ }
+
+ return backendData;
+ }
+
+ __sanitizePapers() {
+ const paperSanitizer = new PaperSanitizer(this.config);
+
+ paperSanitizer.checkRequiredProps(this.papers, this.paperProps);
+ this.papers = paperSanitizer.sanitizeProps(this.papers, this.paperProps);
+ paperSanitizer.checkUniqueProps(this.papers, this.paperProps);
+ }
+
+ __processPapers() {
+ const blockedCoords = {};
+ this.papers.forEach((paper) => {
+ paper.safe_id = this.__getSafeId(paper);
+ this.__escapeStrings(paper);
+ this.__parseAuthors(paper);
+ this.__parseCoordinates(paper);
+ while (blockedCoords[`${paper.x}:${paper.y}`]) {
+ this.__adjustCoordinates(paper);
+ }
+ blockedCoords[`${paper.x}:${paper.y}`] = true;
+ this.__parseAccess(paper);
+ this.__parseLink(paper);
+ this.__parseComments(paper);
+ this.__countMetrics(paper);
+ this.__parseTags(paper);
+ this.__parseKeywords(paper);
+ this.__parseClassification(paper);
+ });
+ }
+
+ // migrated from legacy code
+ __getSafeId(paper) {
+ const id = paper.id.toString();
+
+ return id.replace(/[^a-zA-Z0-9]/g, (s) => {
+ const c = s.charCodeAt(0);
+ if (c === 32) {
+ return "-";
+ }
+ return "__" + ("000" + c.toString(16)).slice(-4);
+ });
+ }
+
+ __parseAuthors(paper) {
+ paper.authors_list = getAuthorsList(
+ paper.authors,
+ this.config.convert_author_names
+ );
+
+ paper.authors_string = paper.authors_list.join(", ");
+ }
+
+ // migrated from legacy code
+ __escapeStrings(paper) {
+ const protectedProps = new Set(
+ this.paperProps.filter((p) => p.protected).map((p) => p.name)
+ );
+
+ for (const field in paper) {
+ if (typeof paper[field] === "string") {
+ paper[field] = $("").html(paper[field]).val();
+ if (!protectedProps.has(field)) {
+ paper[field] = paper[field].replace(//g, ">");
+ }
+ }
+ }
+ }
+
+ __parseCoordinates(paper) {
+ paper.x = parseCoordinate(paper.x, 8);
+ paper.y = parseCoordinate(paper.y, 8);
+ }
+
+ __adjustCoordinates(paper) {
+ paper.y = (parseFloat(paper.y) + Number(0.00000001)).toFixed(8);
+ }
+
+ __parseAccess(paper) {
+ paper.oa = isOpenAccess(paper, this.config);
+ paper.free_access = parseInt(paper.oa_state) === 3;
+ }
+
+ __parseLink(paper) {
+ paper.oa_link = getOpenAccessLink(paper, this.config);
+ paper.outlink = getOutlink(paper, this.config);
+ paper.list_link = getListLink(paper, this.config, this.context);
+ }
+
+ __parseComments(paper) {
+ paper.comments_for_filtering = paper.comments
+ .map((c) => `${c.comment} ${c.author}`)
+ .join(" ");
+ }
+
+ __countMetrics(paper) {
+ const config = this.config;
+
+ paper.num_readers = 0;
+ paper.internal_readers = 1;
+
+ if (!config.content_based && !config.scale_by) {
+ paper.num_readers = getVisibleMetric(paper, "readers");
+ paper.internal_readers = getInternalMetric(paper, "readers") + 1;
+ }
+ if (config.scale_by) {
+ paper.num_readers = getVisibleMetric(paper, config.scale_by);
+ paper.internal_readers = getInternalMetric(paper, config.scale_by) + 1;
+ }
+
+ paper.readers = paper.num_readers;
+ if (config.metric_list) {
+ paper.tweets = getVisibleMetric(paper, "cited_by_tweeters_count");
+ paper.citations = getVisibleMetric(paper, "citation_count");
+ paper.readers = getVisibleMetric(paper, "readers.mendeley");
+ }
+ }
+
+ __parseTags(paper) {
+ paper.tags = paper.tags
+ .split(",")
+ .map((tag) => tag.trim())
+ .filter((tag) => !!tag);
+ }
+
+ __parseKeywords(paper) {
+ paper.keywords = paper.subject_orig;
+ }
+
+ __parseClassification(paper) {
+ paper.classification = paper.bkl_caption;
+ }
+
+ __scalePapers(size) {
+ const paperWidthFactor = this.config.paper_width_factor;
+ const paperHeightFactor = this.config.paper_height_factor;
+
+ const xs = this.papers.map((e) => e.x);
+ const xScale = getInitialCoordsScale(d3.extent(xs), size);
+
+ const ys = this.papers.map((e) => e.y);
+ const yScale = getInitialCoordsScale(d3.extent(ys), size);
+
+ const diameters = this.papers.map((e) => e.internal_readers);
+ const dScale = getDiameterScale(d3.extent(diameters), size, {
+ referenceSize: this.config.reference_size,
+ minDiameterSize: this.config.min_diameter_size,
+ maxDiameterSize: this.config.max_diameter_size,
+ paperMinScale: this.scalingFactors.paperMinScale,
+ paperMaxScale: this.scalingFactors.paperMaxScale,
+ });
+
+ this.papers.forEach((paper) => {
+ paper.x = xScale(paper.x);
+ paper.y = yScale(paper.y);
+ paper.diameter = dScale(paper.internal_readers);
+ paper.width =
+ paperWidthFactor *
+ Math.sqrt(Math.pow(paper.diameter, 2) / GOLDEN_RATIO);
+ paper.height =
+ paperHeightFactor *
+ Math.sqrt(Math.pow(paper.diameter, 2) / GOLDEN_RATIO);
+
+ // some fallback values
+ paper.zoomedX = paper.x;
+ paper.zoomedY = paper.y;
+ paper.zoomedWidth = paper.width;
+ paper.zoomedHeight = paper.height;
+ });
+ }
+
+ __computeScalingFactors(numOfPapers) {
+ const [paperFactor, bubbleFactor] = this.__getResizeFactors(numOfPapers);
+
+ this.scalingFactors = {
+ bubbleMinScale: this.config.bubble_min_scale * bubbleFactor,
+ bubbleMaxScale: this.config.bubble_max_scale * bubbleFactor,
+ paperMinScale: this.config.paper_min_scale * paperFactor,
+ paperMaxScale: this.config.paper_max_scale * paperFactor,
+ };
+ }
+
+ // coefficients taken from legacy code
+ __getResizeFactors(numOfPapers) {
+ if (!this.config.dynamic_sizing) {
+ return [1, 1];
+ }
+
+ if (numOfPapers < 150) {
+ return [1, 1];
+ }
+ if (numOfPapers < 200) {
+ return [0.9, 1.1];
+ }
+ if (numOfPapers < 250) {
+ return [0.8, 1.1];
+ }
+ if (numOfPapers < 300) {
+ return [0.7, 1.1];
+ }
+ if (numOfPapers < 500) {
+ return [0.7, 1.2];
+ }
+
+ return [0.6, 1.2];
+ }
+
+ __parseAreas() {
+ const areas = {};
+
+ this.papers.forEach((paper) => {
+ const areaUri = paper.area_uri;
+ if (!areas[areaUri]) {
+ areas[areaUri] = {
+ area_uri: areaUri,
+ title: paper.area,
+ papers: [],
+ };
+ }
+
+ areas[areaUri].papers.push(paper);
+ });
+
+ this.areas = [];
+ for (const areaUri in areas) {
+ const papers = areas[areaUri].papers;
+
+ const x =
+ papers.map((e) => parseFloat(e.x)).reduce((a, b) => a + b, 0) /
+ (1.0 * papers.length);
+ const y =
+ papers.map((e) => -parseFloat(e.y)).reduce((a, b) => a + b, 0) /
+ (1.0 * papers.length);
+
+ areas[areaUri].origX = x;
+ areas[areaUri].origY = y;
+
+ const readers = papers
+ .map((e) => e.internal_readers)
+ .reduce((a, b) => a + b, 0);
+ areas[areaUri].num_readers = readers;
+ areas[areaUri].origR = readers;
+
+ this.areas.push(areas[areaUri]);
+ }
+ }
+
+ __scaleAreas(size) {
+ const scaleOptions = {
+ minAreaSize: this.config.min_area_size,
+ maxAreaSize: this.config.max_area_size,
+ referenceSize: this.config.reference_size,
+ bubbleMinScale: this.scalingFactors.bubbleMinScale,
+ bubbleMaxScale: this.scalingFactors.bubbleMaxScale,
+ };
+
+ const xs = this.areas.map((e) => e.origX);
+ const xScale = getCoordsScale(d3.extent(xs), size, scaleOptions);
+
+ const ys = this.areas.map((e) => e.origY);
+ const yScale = getCoordsScale(d3.extent(ys), size, scaleOptions);
+
+ const rs = this.areas.map((e) => e.origR);
+ const rScale = getRadiusScale(d3.extent(rs), size, scaleOptions);
+
+ this.areas.forEach((area) => {
+ area.x = xScale(area.origX);
+ area.y = yScale(area.origY);
+ area.r = rScale(area.origR);
+
+ // some fallback values
+ area.zoomedX = area.x;
+ area.zoomedY = area.y;
+ area.zoomedR = area.r;
+ });
+ }
+
+ __parseStreams(backendData) {
+ const parsedData = JSON.parse(backendData.streamgraph);
+ const transformedData = transformData(parsedData);
+
+ const nest = d3.nest().key((d) => d.key);
+
+ const nestedEntries = nest.entries(transformedData);
+
+ const stack = d3.layout
+ .stack()
+ .offset("silhouette")
+ .values((d) => d.values)
+ .x((d) => d.date)
+ .y((d) => d.value);
+
+ this.streams = stack(nestedEntries);
+
+ this.streams.forEach((stream) => {
+ const firstTransformedEntry = transformedData.find(
+ (t) => t.key === stream.key
+ );
+ stream.docIds = firstTransformedEntry ? firstTransformedEntry.docIds : [];
+ });
+ }
+}
+
+export default DataManager;
diff --git a/vis/js/dataschemes/defaultScheme.js b/vis/js/dataschemes/defaultScheme.js
new file mode 100644
index 000000000..4255f9b6f
--- /dev/null
+++ b/vis/js/dataschemes/defaultScheme.js
@@ -0,0 +1,142 @@
+import {
+ commentArrayValidator,
+ commentsSanitizer,
+ dateValidator,
+ oaStateValidator,
+ resultTypeSanitizer,
+ stringArrayValidator,
+} from "../utils/data";
+
+/**
+ * Scheme object based on the metadata spreadsheet.
+ *
+ * https://docs.google.com/spreadsheets/d/112Anbf-sJYkehyFvjuxr1DuMih-fPB9nt3E8ll19Iyc/edit#gid=0
+ *
+ * It's an array of objects, each object describes a paper property.
+ *
+ * It has the following properties:
+ *
+ * - name: string - the paper property's name
+ * - required?: boolean - true for mandatory properties
+ * - type?: string[] - list of allowed js types
+ * - protected?: boolean - true for properties that shouldn't be escaped
+ * - validator?: (value: any) => boolean - validator function that receives the property value and returns true if the value is valid
+ * - sanitizer?: (value: any) => any - sanitizer function that sanitizes the property value
+ * - fallback?: (localization?: object, paper?: object) => any - fallback function that returns a fallback value
+ *
+ */
+const DEFAULT_SCHEME = [
+ {
+ name: "id",
+ required: true,
+ type: ["string"],
+ unique: true,
+ fallback: (loc) => loc.default_id,
+ },
+ { name: "identifier", type: ["string"], fallback: () => "" },
+ {
+ name: "authors",
+ required: true,
+ type: ["string"],
+ protected: true,
+ fallback: () => "",
+ },
+ {
+ name: "title",
+ required: true,
+ type: ["string"],
+ fallback: () => "",
+ },
+ {
+ name: "paper_abstract",
+ required: true,
+ type: ["string"],
+ protected: true,
+ fallback: (loc) => loc.default_abstract,
+ },
+ {
+ name: "year",
+ required: true,
+ type: ["string"],
+ validator: dateValidator,
+ // we use whatever we have, it's better than not displaying anything
+ sanitizer: (val) => val,
+ fallback: (loc) => loc.default_year,
+ },
+ {
+ name: "oa_state",
+ type: ["number", "string"],
+ required: true,
+ validator: oaStateValidator,
+ fallback: () => 2,
+ },
+ {
+ name: "subject_orig",
+ required: true,
+ type: ["string"],
+ validator: (val) => val !== "",
+ fallback: (loc) => loc.no_keywords,
+ },
+ { name: "subject_cleaned", required: true, type: ["string"] },
+ { name: "relevance", required: true, type: ["number"] },
+ { name: "link", type: ["string"] },
+ {
+ name: "published_in",
+ type: ["string"],
+ fallback: (loc) => loc.default_published_in,
+ },
+ { name: "fulltext", type: ["string"] },
+ { name: "language", type: ["string"] },
+ { name: "subject", type: ["string"] },
+ {
+ name: "url",
+ type: ["string"],
+ fallback: (loc) => loc.default_url,
+ },
+ {
+ name: "relation",
+ type: ["string"],
+ fallback: () => "",
+ },
+ {
+ name: "resulttype",
+ type: ["object"],
+ validator: stringArrayValidator,
+ sanitizer: resultTypeSanitizer,
+ fallback: () => [],
+ },
+ {
+ name: "comments",
+ type: ["object"],
+ validator: commentArrayValidator,
+ sanitizer: commentsSanitizer,
+ fallback: () => [],
+ },
+ { name: "readers", fallback: (loc) => loc.default_readers },
+ { name: "tags", type: ["string"], fallback: () => "" },
+ { name: "bkl_caption", type: ["string"], fallback: (loc) => loc.no_keywords },
+ { name: "doi", type: ["string"] },
+ {
+ name: "x",
+ type: ["string", "number"],
+ required: true,
+ fallback: (loc) => loc.default_x,
+ },
+ {
+ name: "y",
+ type: ["string", "number"],
+ required: true,
+ fallback: (loc) => loc.default_y,
+ },
+ { name: "area", required: true, fallback: (loc) => loc.default_area },
+ {
+ name: "area_uri",
+ type: ["string", "number"],
+ required: true,
+ fallback: (l, paper) => paper.area,
+ },
+ { name: "cluster_labels", required: true },
+ { name: "file_hash", type: ["string"], fallback: (loc) => loc.default_hash },
+];
+
+export default DEFAULT_SCHEME;
diff --git a/vis/js/default-config.js b/vis/js/default-config.js
index 89dd9bcce..c3a5ab4a0 100644
--- a/vis/js/default-config.js
+++ b/vis/js/default-config.js
@@ -162,23 +162,12 @@ var config = {
, "year"
, "published_in"
, "subject_orig"],
-
- //extension for fields that are highlighted that contain the original text,
- //not the text including the spans
- sort_field_exentsion: "_sort",
//display filter menu dropdown
filter_menu_dropdown: false,
- //[deprecated] list subentry settings
- list_sub_entries: false,
- list_sub_entries_readers: false,
- list_sub_entries_number: false,
- list_sub_entries_statistics: false,
list_images: [],
list_images_path: "images/",
visual_distributions: false,
- //[deprecated] list link to an external visualization settings
- list_show_external_vis: false,
external_vis_url: "",
/*** button/modal settings ***/
diff --git a/vis/js/intermediate.js b/vis/js/intermediate.js
index 124df1aa9..22281bb90 100644
--- a/vis/js/intermediate.js
+++ b/vis/js/intermediate.js
@@ -24,11 +24,11 @@ import logAction from "./utils/actionLogger";
import { getChartSize, getListSize } from "./utils/dimensions";
import Headstart from "./components/Headstart";
-import { sanitizeInputData } from "./utils/data";
import { createAnimationCallback } from "./utils/eventhandlers";
import { removeQueryParams, handleUrlAction } from "./utils/url";
import debounce from "./utils/debounce";
import { handleTitleAction } from "./utils/title";
+import DataManager from "./datamanagers/DataManager";
/**
* Class to sit between the "old" mediator and the
@@ -37,7 +37,11 @@ import { handleTitleAction } from "./utils/title";
* This class should ideally only talk to the mediator and redux
*/
class Intermediate {
- constructor(rescaleCallback) {
+ constructor(config, rescaleCallback) {
+ this.config = config;
+ this.dataManager = new DataManager(config);
+
+ this.originalTitle = "";
this.actionQueue = [];
const middleware = applyMiddleware(
@@ -55,11 +59,10 @@ class Intermediate {
this.store = createStore(rootReducer, middleware);
}
- renderFrontend(config) {
- this.config = config;
+ renderFrontend() {
this.originalTitle = document.title;
- this.store.dispatch(preinitializeStore(config));
+ this.store.dispatch(preinitializeStore(this.config));
ReactDOM.render(
@@ -74,35 +77,32 @@ class Intermediate {
);
}
- initStore(config, context, mapData, streamData) {
- const { size, width, height } = getChartSize(config, context);
- const list = getListSize(config, context, size);
+ initStore(backendData) {
+ const config = this.config;
+ const { size, width, height } = getChartSize(config);
- this.config = config;
- this.sanitizedMapData = sanitizeInputData(mapData);
- this.streamData = streamData;
+ this.dataManager.parseData(backendData, size);
+
+ const context = this.dataManager.context;
+
+ const list = getListSize(config, context, size);
this.store.dispatch(
initializeStore(
config,
context,
- this.sanitizedMapData,
- this.streamData,
+ this.dataManager.papers,
+ this.dataManager.areas,
+ this.dataManager.streams,
size,
width,
height,
- list.height
+ list.height,
+ this.dataManager.scalingFactors
)
);
- if (!config.is_streamgraph) {
- this.forceLayoutParams = {
- areasAlpha: config.area_force_alpha,
- isForceAreas: config.is_force_areas,
- papersAlpha: config.papers_force_alpha,
- isForcePapers: config.is_force_papers,
- };
-
+ if (!this.config.is_streamgraph) {
this.applyForceLayout();
}
@@ -180,7 +180,9 @@ class Intermediate {
const zoomedPaper = params.get("paper");
- const paper = this.sanitizedMapData.find((p) => p.safe_id === zoomedPaper);
+ const paper = this.dataManager.papers.find(
+ (p) => p.safe_id === zoomedPaper
+ );
if (!paper) {
return;
@@ -220,7 +222,7 @@ class Intermediate {
return;
}
- const area = this.sanitizedMapData.find((a) => a.area_uri == zoomedArea);
+ const area = this.dataManager.papers.find((a) => a.area_uri == zoomedArea);
if (!area) {
return;
@@ -237,9 +239,9 @@ class Intermediate {
}
// triggered on window resize
- updateDimensions(config, context) {
- const chart = getChartSize(config, context);
- const list = getListSize(config, context, chart.size);
+ updateDimensions() {
+ const chart = getChartSize(this.config, this.dataManager.context);
+ const list = getListSize(this.config, this.dataManager.context, chart.size);
this.store.dispatch(updateDimensions(chart, list));
}
@@ -254,9 +256,64 @@ class Intermediate {
this.store.dispatch(applyForceAreas(newAreas, state.chart.height)),
(newPapers) =>
this.store.dispatch(applyForcePapers(newPapers, state.chart.height)),
- this.forceLayoutParams
+ {
+ areasAlpha: this.getAreasForceAlpha(this.dataManager.papers.length),
+ isForceAreas: this.config.is_force_areas,
+ papersAlpha: this.getPapersForceAlpha(this.dataManager.papers.length),
+ isForcePapers: this.config.is_force_papers,
+ }
);
}
+
+ /**
+ * Returns alpha value needed for the force layout.
+ *
+ * The alpha values are adopted from the legacy code.
+ *
+ * @param {number} numOfPapers how many papers are in the vis
+ *
+ * @returns paper force layout alpha value
+ */
+ getPapersForceAlpha(numOfPapers) {
+ if (!this.config.is_force_papers || !this.config.dynamic_force_papers) {
+ return this.config.papers_force_alpha;
+ }
+ if (numOfPapers < 150) {
+ return this.config.papers_force_alpha;
+ }
+ if (numOfPapers < 200) {
+ return 0.2;
+ }
+ if (numOfPapers < 350) {
+ return 0.3;
+ }
+ if (numOfPapers < 500) {
+ return 0.4;
+ }
+
+ return 0.6;
+ }
+
+ /**
+ * Returns alpha value needed for the force layout.
+ *
+ * The alpha values are adopted from the legacy code.
+ *
+ * @param {number} numOfPapers how many papers are in the vis
+ *
+ * @returns area force layout alpha value
+ */
+ getAreasForceAlpha(numOfPapers) {
+ if (!this.config.is_force_area || !this.config.dynamic_force_area) {
+ return this.config.area_force_alpha;
+ }
+
+ if (numOfPapers < 200) {
+ return this.config.area_force_alpha;
+ }
+
+ return 0.02;
+ }
}
/**
diff --git a/vis/js/io.js b/vis/js/io.js
deleted file mode 100644
index f4ad83fcd..000000000
--- a/vis/js/io.js
+++ /dev/null
@@ -1,350 +0,0 @@
-// Class for data IO
-// Filename: io.js
-import $ from "jquery";
-import d3 from "d3";
-
-import config from 'config';
-import { mediator } from 'mediator';
-import { getAuthorsList } from "./utils/data";
-
-var IO = function() {
- this.test = 0;
- this.areas = {};
- this.areas_array = [];
- this.fs = [];
- this.title = "default-title";
- this.context = {};
- this.num_oa = undefined;
- this.num_papers = undefined;
- this.num_datasets = undefined;
- this.data = undefined;
-};
-
-IO.prototype = {
- // get, transform and serve data to other modules
- async_get_data: function(file, input_format, callback) {
- d3[input_format](file, (csv) => {
- callback(csv);
- });
- },
-
- get_server_files: function(callback) {
- $.ajax({
- type: 'POST',
- url: config.server_url + "services/staticFiles.php",
- data: "",
- dataType: 'JSON',
- success: (json) => {
- config.files = [];
- for (let i = 0; i < json.length; i++) {
- config.files.push({
- "title": json[i].title,
- "file": config.server_url + "static" + json[i].file
- });
- }
- mediator.publish("register_bubbles");
- d3[config.input_format](mediator.current_bubble.file, callback);
- }
- });
- },
-
- setToStringIfNullOrUndefined: function (element, strng) {
- if (element === null || typeof element === "undefined") {
- return strng;
- } else {
- return element;
- }
- },
-
- setDefaultIfNullOrUndefined: function (object, element, defaultVal) {
- if (object[element] === null || typeof object[element] === "undefined") {
- if (config.debug) console.log(`Sanitized a value ${object[element]} of ${element} to ${defaultVal}`);
- object[element] = defaultVal;
- }
- },
-
- setContext: function(context, num_documents) {
- this.context = context;
- if(Object.prototype.hasOwnProperty.call(context, "params")) {
- context.params = (typeof context.params === "object")
- ?(context.params)
- :(JSON.parse(context.params));
- }
- this.context.num_documents = num_documents;
- this.context.share_oa = this.num_oa;
- this.context.num_datasets = this.num_datasets;
- this.context.num_papers = this.num_papers;
- },
-
- initializeMissingData: function(data) {
- let that = this;
- let locale = config.localization[config.language];
- data.forEach((d) => {
- that.setDefaultIfNullOrUndefined(d, 'area', locale.default_area);
- that.setDefaultIfNullOrUndefined(d, 'authors', locale.default_author);
- that.setDefaultIfNullOrUndefined(d, 'file_hash', locale.default_hash);
- that.setDefaultIfNullOrUndefined(d, 'id', locale.default_id);
- that.setDefaultIfNullOrUndefined(d, 'paper_abstract', locale.default_abstract);
- that.setDefaultIfNullOrUndefined(d, 'published_in', locale.default_published_in);
- that.setDefaultIfNullOrUndefined(d, 'readers', locale.default_readers);
- that.setDefaultIfNullOrUndefined(d, 'title', locale.no_title);
- that.setDefaultIfNullOrUndefined(d, 'url', locale.default_url);
- that.setDefaultIfNullOrUndefined(d, 'x', locale.default_x);
- that.setDefaultIfNullOrUndefined(d, 'y', locale.default_y);
- that.setDefaultIfNullOrUndefined(d, 'year', locale.default_year);
- that.setDefaultIfNullOrUndefined(d, 'comments', []);
- that.setDefaultIfNullOrUndefined(d, 'subject_orig', "");
- config.scale_types.forEach((type) => {
- that.setDefaultIfNullOrUndefined(d, type, locale.default_readers);
- })
- })
- },
-
- prepareData: function (fs, context) {
- this.areas = {};
- this.areas_array = [];
-
- var _this = this;
- var xy_array = [];
- // convert to numbers
- var cur_data = fs;
- var num_oa = 0;
- var num_papers = 0;
- var num_datasets = 0;
-
- const protectedAttrs = new Set(["paper_abstract", "authors_string"]);
-
- cur_data.forEach(function (d) {
- //convert special entities to characters
- for (let field in d) {
- if(typeof d[field] === "string") {
- d[field] = $("").html(d[field]).val();
- }
- }
-
- var authorsList = getAuthorsList(d.authors, config.convert_author_names);
- d.authors_string = authorsList.join(", ");
-
- //replace "<" and ">" to avoid having HTML tags
- for (let field in d) {
- if(typeof d[field] === "string" && !protectedAttrs.has(field)) {
- d[field] = d[field].replace(//g, ">");
- }
- }
-
- d.safe_id = _this.convertToSafeID(d.id);
-
- if(Object.prototype.hasOwnProperty.call(d, "snippets") && d.snippets !== "") {
- d.snippets = d.snippets.replace(/<em>/g, "");
- d.snippets = d.snippets.replace(/<\/em>/g, " ");
- d.snippets = d.snippets.replace(/<span>/g, "");
- d.snippets = d.snippets.replace(/<\/span>/g, " ");
- d.paper_abstract = d.snippets;
- }
-
- let prepareCoordinates = function(coordinate, digits) {
- if (isNaN(parseFloat(coordinate))) {
- return parseFloat(0).toFixed(digits);
- }
-
- let fixed_coordinate = parseFloat(coordinate).toFixed(digits);
-
- //convert -0 to 0 so that the same location detection still works
- if (fixed_coordinate === "-" + parseFloat(0).toFixed(digits)) {
- return parseFloat(0).toFixed(digits);
- }
-
- return fixed_coordinate
- }
-
- d.x = prepareCoordinates(d.x, 8);
- d.y = prepareCoordinates(d.y, 8);
- //if two items have the exact same location,
- // that throws off the force-based layout
- var xy_string = d.x + d.y;
- while (Object.prototype.hasOwnProperty.call(xy_array, xy_string)) {
- d.y = parseFloat(d.y) + Number(0.00000001);
- xy_string = d.x + d.y;
- }
-
- xy_array[xy_string] = true;
-
- d.paper_abstract = _this.setToStringIfNullOrUndefined(d.paper_abstract, "");
- d.published_in = _this.setToStringIfNullOrUndefined(d.published_in, "");
- d.title = _this.setToStringIfNullOrUndefined(d.title,
- config.localization[config.language]["no_title"]);
-
- var prepareMetric = function(d, metric) {
- if(Object.prototype.hasOwnProperty.call(d, metric)) {
- if(d[metric] === "N/A") {
- return "n/a"
- } else {
- return +d[metric];
- }
- }
- }
-
- var prepareInternalMetric = function(d, metric) {
- if(d[metric] === "n/a" || d[metric] === "N/A") {
- return 0;
- } else {
- return +d[metric];
- }
- }
-
- var prepareSubMetric = function(d, metric) {
- let num = 0;
- d.paper_abstract.forEach(function (element) {
- num += +element.readers;
- })
- return num;
- }
-
- if (config.list_sub_entries) {
- d.num_readers = prepareSubMetric(d, "readers");
- d.internal_readers = d.num_readers + 1;
- } else if (config.content_based === false && !(config.scale_by)) {
- d.num_readers = prepareMetric(d, "readers");
- d.internal_readers = prepareInternalMetric(d, "readers") + 1;
- } else if (config.scale_by) {
- d.num_readers = prepareMetric(d, config.scale_by);
- d.internal_readers = prepareInternalMetric(d, config.scale_by) + 1
- } else {
- d.num_readers = 0;
- d.internal_readers = 1;
- }
-
- d.num_subentries = 0;
-
- if (config.list_sub_entries) {
- d.abstract_search = "";
- d.paper_abstract.forEach(function(obj) {
- d.abstract_search += obj.abstract + " ";
- d.num_subentries++;
- })
- }
-
- if(config.metric_list) {
- d.tweets = prepareMetric(d, "cited_by_tweeters_count")
- d.citations = prepareMetric(d, "citation_count")
- d.readers = prepareMetric(d, "readers.mendeley")
- } else {
- d.readers = d.num_readers;
- }
-
- d.paper_selected = false;
-
- d.oa = false;
- d.free_access = false;
-
- if (config.service === "doaj") {
- d.oa = true;
- d.oa_link = d.link;
- } else if (config.service === "plos") {
- d.oa = true;
- var journal = d.published_in.toLowerCase();
- d.oa_link = "http://journals.plos.org/" +
- config.plos_journals_to_shortcodes[journal]
- + "/article/asset?id=" + d.id + ".PDF";
- } else if (typeof d.pmcid !== "undefined") {
- if (d.pmcid !== "") {
- d.oa = true;
- d.oa_link = "http://www.ncbi.nlm.nih.gov/pmc/articles/" + d.pmcid + "/pdf/";
- }
- } else if(config.service === "base") {
- d.oa = (d.oa_state === 1 || d.oa_state === "1")?(true):(false);
- d.oa_link = d.link;
- } else if(config.service === "openaire") {
- d.oa = (d.oa_state === 1 || d.oa_state === "1")?(true):(false);
- d.oa_link = d.link;
- } else if(config.service === "linkedcat") {
- d.oa_link = d.link;
- d.oa = (d.oa_state === 1 || d.oa_state === "1")?(true):(false);
- } else {
- d.oa = (d.oa_state === 1 || d.oa_state === "1")?(true):(false);
- d.oa_link = d.link;
- d.free_access = (d.oa_state === 3 || d.oa_state === "3")?(true):(false);
- }
-
- d.outlink = _this.createOutlink(d);
-
- num_oa += (d.oa)?(1):(0);
- num_papers += (d.resulttype === 'publication')?(1):(0);
- num_datasets += (d.resulttype === 'dataset')?(1):(0);
-
- if(config.list_show_external_vis) {
- d.external_vis_link = config.external_vis_url
- + "?vis_id=" + config.files[mediator.current_file_number].file
- + "&doc_id=" + d.id
- + "&search_term=" + context.query.replace(/\\(.?)/g, "$1");
- }
-
- d.comments_for_filtering = _this.createCommentStringForFiltering(d.comments);
-
- if(config.highlight_query_terms) {
- for (let field of config.highlight_query_fields) {
- d[field + config.sort_field_exentsion] = d[field];
- }
- }
-
- });
-
- this.num_oa = num_oa;
- this.num_papers = num_papers;
- this.num_datasets = num_datasets;
-
- var areas = this.areas;
- cur_data.forEach(function (d) {
- var area = (config.use_area_uri) ? (d.area_uri) : (d.area);
- if (area in areas) {
- areas[area].papers.push(d);
- } else {
- areas[area] = {};
- areas[area].title = d.area;
- areas[area].papers = [d];
- }
-
- d.resized = false;
- });
-
- this.data = cur_data;
- },
-
- createCommentStringForFiltering: function(comments) {
- let return_string = "";
-
- for(let comment of comments) {
- return_string += comment.comment + " " + comment.author;
- }
-
- return return_string;
- },
-
- convertToSafeID: function (id) {
- let id_string = id.toString();
-
- return id_string.replace(/[^a-zA-Z0-9]/g, function(s) {
- var c = s.charCodeAt(0);
- if (c === 32) return '-';
- return '__' + ('000' + c.toString(16)).slice(-4);
- });
- },
-
- createOutlink: function(d) {
- var url = false;
- if (config.service === "base") {
- url = d.oa_link;
- } else if (config.service === "openaire" && d.resulttype === "dataset") {
- url = config.url_prefix_datasets + d.url;
- } else if(config.url_prefix !== null) {
- url = config.url_prefix + d.url;
- } else if (typeof d.url !== 'undefined') {
- url = d.url;
- }
-
- return url;
- }
-};
-//var io = new IO();
-export const io = new IO();
diff --git a/vis/js/mediator.js b/vis/js/mediator.js
index 2e49f1eb1..e4e38e069 100644
--- a/vis/js/mediator.js
+++ b/vis/js/mediator.js
@@ -3,7 +3,6 @@ import $ from "jquery";
import d3 from "d3";
import config from 'config';
-import { io } from 'io';
import Intermediate from './intermediate';
// needed for draggable modals (it can be refactored with react-bootstrap though)
@@ -32,7 +31,8 @@ var MyMediator = function() {
this.fileData = [];
this.mediator = new Mediator();
this.manager = new ModuleManager();
- this.intermediate_layer = new Intermediate(this.rescale_map);
+ this.intermediate_layer = new Intermediate(config, this.rescale_map);
+ this.context = {};
this.init();
this.init_state();
};
@@ -41,17 +41,15 @@ MyMediator.prototype = {
constructor: MyMediator,
init: function() {
// init logic and state switching
- this.modules = { io: io };
this.mediator.subscribe("start_visualization", this.init_start_visualization);
this.mediator.subscribe("start", this.buildHeadstartHTML);
this.mediator.subscribe("start", this.register_bubbles);
- this.mediator.subscribe("start", this.init_modules);
this.mediator.subscribe("ontofile", this.init_ontofile);
this.mediator.subscribe("register_bubbles", this.register_bubbles);
// async calls
- this.mediator.subscribe("get_data_from_files", this.io_async_get_data);
- this.mediator.subscribe("get_server_files", this.io_get_server_files);
+ this.mediator.subscribe("get_data_from_files", this.async_get_data);
+ this.mediator.subscribe("get_server_files", this.get_server_files);
// bubbles events
this.mediator.subscribe("bubbles_update_data_and_areas", this.bubbles_update_data_and_areas);
@@ -59,22 +57,9 @@ MyMediator.prototype = {
init_state: function() {
MyMediator.prototype.current_file_number = 0;
- MyMediator.prototype.current_stream = null;
},
- init_modules: function() {
- mediator.manager.registerModule(io, 'io');
- },
-
- render_frontend: function() {
- mediator.intermediate_layer.renderFrontend(config);
- },
-
- init_store: function() {
- mediator.intermediate_layer.initStore(config, io.context, io.data, mediator.streamgraph_data);
- },
-
- // current_bubble needed in the headstart.js and io.js
+ // current_bubble needed in the headstart.js
register_bubbles: function() {
mediator.bubbles = [];
$.each(config.files, (index, elem) => {
@@ -93,12 +78,30 @@ MyMediator.prototype = {
this.mediator.publish(...arguments);
},
- io_async_get_data: function (url, input_format, callback) {
- mediator.manager.call('io', 'async_get_data', [url, input_format, callback]);
+ async_get_data: function (file, input_format, callback) {
+ d3[input_format](file, (csv) => {
+ callback(csv);
+ });
},
- io_get_server_files: function(callback) {
- mediator.manager.call('io', 'get_server_files', [callback]);
+ get_server_files: function(callback) {
+ $.ajax({
+ type: 'POST',
+ url: config.server_url + "services/staticFiles.php",
+ data: "",
+ dataType: 'JSON',
+ success: (json) => {
+ config.files = [];
+ for (let i = 0; i < json.length; i++) {
+ config.files.push({
+ "title": json[i].title,
+ "file": config.server_url + "static" + json[i].file
+ });
+ }
+ mediator.publish("register_bubbles");
+ d3[config.input_format](mediator.current_bubble.file, callback);
+ }
+ });
},
init_ontofile: function (file) {
@@ -108,31 +111,10 @@ MyMediator.prototype = {
mediator.external_vis_url = config.external_vis_url + "?vis_id=" + config.files[mediator.current_file_number].file
},
- init_start_visualization: function(csv) {
- const data = mediator.parse_data(csv);
-
- mediator.dispatch_data_event(csv);
-
- let context = (typeof csv.context !== 'object')?({}):(csv.context);
- mediator.streamgraph_data = (config.is_streamgraph)?(csv.streamgraph):{};
-
- mediator.manager.call('io', 'initializeMissingData', [data]);
- mediator.manager.call('io', 'prepareData', [data, context]);
- mediator.manager.call('io', 'setContext', [context, data.length]);
+ init_start_visualization: function(backendData) {
+ mediator.dispatch_data_event(backendData);
- if (config.is_force_papers && config.dynamic_force_papers) {
- config.papers_force_alpha = mediator.get_papers_force_alpha(data.length);
- }
-
- if (config.is_force_area && config.dynamic_force_area) {
- config.area_force_alpha = mediator.get_areas_force_alpha(data.length);
- }
-
- if (config.dynamic_sizing) {
- mediator.set_dynamic_sizing(data.length);
- }
-
- mediator.init_store();
+ mediator.intermediate_layer.initStore(backendData);
d3.select(window).on("resize", () => {
mediator.dimensions_update();
@@ -145,11 +127,11 @@ MyMediator.prototype = {
this.viz.addClass("headstart");
this.viz.append('
');
- mediator.render_frontend();
+ mediator.intermediate_layer.renderFrontend();
},
dimensions_update: function() {
- mediator.intermediate_layer.updateDimensions(config, io.context);
+ mediator.intermediate_layer.updateDimensions();
},
rescale_map: function(scale_by, base_unit, content_based, initial_sort) {
@@ -164,78 +146,12 @@ MyMediator.prototype = {
window.headstartInstance.tofile(mediator.current_file_number);
},
- parse_data: function(csv) {
- if (config.show_context) {
- if (typeof csv.data === "string") {
- return JSON.parse(csv.data);
- }
- return csv.data;
- }
- if (typeof csv.data === "object") {
- return csv.data;
- }
- return csv;
- },
-
dispatch_data_event: function(csv) {
// Dispatch an event that the data has been loaded for reuse outside of Headstart
const elem = document.getElementById(config.tag);
var event = new CustomEvent('headstart.data.loaded', {detail: {data: csv}});
elem.dispatchEvent(event);
},
-
- get_papers_force_alpha: function(num_items) {
- if (num_items >= 150 && num_items < 200) {
- return 0.2;
- }
- if (num_items >= 200 && num_items < 350) {
- return 0.3;
- }
- if (num_items >= 350 && num_items < 500) {
- return 0.4;
- }
- if (num_items >= 500) {
- return 0.6;
- }
-
- return config.papers_force_alpha;
- },
-
- get_areas_force_alpha: function(num_items) {
- if (num_items >= 200) {
- return 0.02;
- }
-
- return config.area_force_alpha;
- },
-
- set_dynamic_sizing: function(num_items) {
- if (num_items >= 150 && num_items < 200) {
- mediator.adjust_sizes(0.9, 1.1);
- } else if (num_items >= 200 && num_items < 250) {
- mediator.adjust_sizes(0.8, 1.1);
- } else if (num_items >= 250 && num_items < 300) {
- mediator.adjust_sizes(0.7, 1.1);
- } else if (num_items >= 300 && num_items < 350) {
- mediator.adjust_sizes(0.7, 1.2);
- } else if (num_items >= 350 && num_items < 400) {
- mediator.adjust_sizes(0.7, 1.2);
- } else if (num_items >= 400 && num_items < 450) {
- mediator.adjust_sizes(0.7, 1.2);
- } else if (num_items >= 450 && num_items < 500) {
- mediator.adjust_sizes(0.7, 1.2);
- } else if (num_items >= 500) {
- mediator.adjust_sizes(0.6, 1.2);
- }
- },
-
- adjust_sizes: function(resize_paper_factor, resize_bubble_factor) {
- config.paper_min_scale *= resize_paper_factor;
- config.paper_max_scale *= resize_paper_factor;
-
- config.bubble_min_scale *= resize_bubble_factor;
- config.bubble_max_scale *= resize_bubble_factor;
- },
};
export const mediator = new MyMediator();
diff --git a/vis/js/reducers/areas.js b/vis/js/reducers/areas.js
index b0c1bfcf0..fa6b5bf4b 100644
--- a/vis/js/reducers/areas.js
+++ b/vis/js/reducers/areas.js
@@ -1,11 +1,6 @@
import d3 from "d3";
-import {
- getCoordsScale,
- getRadiusScale,
- getResizedScale,
- getZoomScale,
-} from "../utils/scale";
+import { getRadiusScale, getResizedScale, getZoomScale } from "../utils/scale";
const areas = (state = { list: [], size: null, options: {} }, action) => {
if (action.canceled || action.isStreamgraph) {
@@ -17,12 +12,12 @@ const areas = (state = { list: [], size: null, options: {} }, action) => {
minAreaSize: action.configObject.min_area_size,
maxAreaSize: action.configObject.max_area_size,
referenceSize: action.configObject.reference_size,
- bubbleMinScale: action.configObject.bubble_min_scale,
- bubbleMaxScale: action.configObject.bubble_max_scale,
+ bubbleMinScale: action.scalingFactors.bubbleMinScale,
+ bubbleMaxScale: action.scalingFactors.bubbleMaxScale,
zoomFactor: action.configObject.zoom_factor,
};
return {
- list: getAreas(action.dataArray, action.chartSize, options),
+ list: action.areas,
size: action.chartSize,
options,
};
@@ -58,74 +53,6 @@ const areas = (state = { list: [], size: null, options: {} }, action) => {
}
};
-const getAreas = (data, size, options) => {
- const areas = {};
- data.forEach((d) => {
- const areaUri = d.area_uri;
- if (areaUri in areas) {
- areas[areaUri].papers.push(d);
- return;
- }
-
- areas[areaUri] = {};
- areas[areaUri].title = d.area;
- areas[areaUri].area_uri = areaUri;
- areas[areaUri].papers = [d];
- });
-
- const areasArray = [];
- for (let areaUri in areas) {
- let papers = areas[areaUri].papers;
-
- let x =
- papers.map((e) => parseFloat(e.x)).reduce((a, b) => a + b, 0) /
- (1.0 * papers.length);
- let y =
- papers.map((e) => -parseFloat(e.y)).reduce((a, b) => a + b, 0) /
- (1.0 * papers.length);
-
- areas[areaUri].origX = x;
- areas[areaUri].origY = y;
-
- let readers = papers
- .map((e) => e.internal_readers)
- .reduce((a, b) => a + b, 0);
- areas[areaUri].num_readers = readers;
- // TODO different metrics
- areas[areaUri].origR = readers;
-
- areasArray.push(areas[areaUri]);
- }
-
- return rescaleAreas(areasArray, size, options);
-};
-
-const rescaleAreas = (areas, size, options) => {
- const rescaledAreas = areas.slice(0);
-
- let xs = rescaledAreas.map((e) => e.origX);
- let xScale = getCoordsScale(d3.extent(xs), size, options);
-
- let ys = rescaledAreas.map((e) => e.origY);
- let yScale = getCoordsScale(d3.extent(ys), size, options);
-
- let rs = rescaledAreas.map((e) => e.origR);
- let rScale = getRadiusScale(d3.extent(rs), size, options);
-
- rescaledAreas.forEach((area) => {
- area.x = xScale(area.origX);
- area.y = yScale(area.origY);
- area.r = rScale(area.origR);
-
- // some fallback values
- area.zoomedX = area.x;
- area.zoomedY = area.y;
- area.zoomedR = area.r;
- });
-
- return rescaledAreas;
-};
-
const resizeAreas = (areas, currentSize, newSize, options) => {
const resizedAreas = areas.slice(0);
diff --git a/vis/js/reducers/contextLine.js b/vis/js/reducers/contextLine.js
index 9c00b169e..8a1a5de13 100644
--- a/vis/js/reducers/contextLine.js
+++ b/vis/js/reducers/contextLine.js
@@ -8,15 +8,16 @@ const contextLine = (state = {}, action) => {
const config = action.configObject;
const context = action.contextObject;
+ const papers = action.papers;
switch (action.type) {
case "INITIALIZE":
return {
show: !!config.show_context && !!context.params,
- articlesCount: context.num_documents,
- modifier: getModifier(config, context),
+ articlesCount: papers.length,
+ modifier: getModifier(config, context, papers.length),
openAccessCount: config.show_context_oa_number
- ? context.share_oa
+ ? papers.filter((p) => p.oa).length
: null,
showAuthor:
!!config.is_authorview &&
@@ -39,11 +40,11 @@ const contextLine = (state = {}, action) => {
: config.service_names[context.service],
paperCount:
config.create_title_from_context_style === "viper"
- ? context.num_papers
+ ? papers.filter((p) => p.resulttype.includes("publication")).length
: null,
datasetCount:
config.create_title_from_context_style === "viper"
- ? context.num_datasets
+ ? papers.filter((p) => p.resulttype.includes("dataset")).length
: null,
funder:
config.create_title_from_context_style === "viper" && context.params
@@ -73,11 +74,11 @@ const contextLine = (state = {}, action) => {
*
* @returns {string} either most-recent, most-relevant or null
*/
-export const getModifier = (config, context) => {
+export const getModifier = (config, context, numOfPapers) => {
if (
!context.params ||
!exists(context.params.sorting) ||
- (context.num_documents < config.max_documents &&
+ (numOfPapers < config.max_documents &&
// temporarily allowing most relevant label for fewer documents
// (after a backend change this should be removed and refactored)
context.params.sorting !== "most-relevant")
diff --git a/vis/js/reducers/data.js b/vis/js/reducers/data.js
index 4f6664ab6..5fa26db46 100644
--- a/vis/js/reducers/data.js
+++ b/vis/js/reducers/data.js
@@ -9,27 +9,18 @@ const data = (state = { list: [], options: {}, size: null }, action) => {
switch (action.type) {
case "INITIALIZE": {
- const data = action.dataArray;
const options = {
- maxAreaSize: action.configObject.max_area_size,
referenceSize: action.configObject.reference_size,
- bubbleMinScale: action.configObject.bubble_min_scale,
- bubbleMaxScale: action.configObject.bubble_max_scale,
minDiameterSize: action.configObject.min_diameter_size,
maxDiameterSize: action.configObject.max_diameter_size,
- paperMinScale: action.configObject.paper_min_scale,
- paperMaxScale: action.configObject.paper_max_scale,
+ paperMinScale: action.scalingFactors.paperMinScale,
+ paperMaxScale: action.scalingFactors.paperMaxScale,
paperWidthFactor: action.configObject.paper_width_factor,
paperHeightFactor: action.configObject.paper_height_factor,
isStreamgraph: action.configObject.is_streamgraph,
};
- let list = data;
- if (!options.isStreamgraph) {
- list = rescalePapers(data, action.chartSize, options);
- }
-
- return { list, options, size: action.chartSize };
+ return { list: action.papers, options, size: action.chartSize };
}
case "RESIZE": {
if (state.list.length === 0) {
@@ -57,51 +48,6 @@ const data = (state = { list: [], options: {}, size: null }, action) => {
export default data;
-const GOLDEN_RATIO = 2.6;
-
-const rescalePapers = (papers, size, options) => {
- let rescaledPapers = papers.slice(0);
-
- let xs = rescaledPapers.map((e) => e.x);
- let xScale = getInitialCoordsScale(d3.extent(xs), size, options);
-
- let ys = rescaledPapers.map((e) => e.y);
- let yScale = getInitialCoordsScale(d3.extent(ys), size, options);
-
- let diameters = rescaledPapers.map((e) => e.internal_readers);
- let dScale = getDiameterScale(d3.extent(diameters), size, options);
-
- rescaledPapers.forEach((paper) => {
- paper.x = xScale(paper.x);
- paper.y = yScale(paper.y);
- paper.diameter = dScale(paper.internal_readers);
- paper.width =
- options.paperWidthFactor *
- Math.sqrt(Math.pow(paper.diameter, 2) / GOLDEN_RATIO);
- paper.height =
- options.paperHeightFactor *
- Math.sqrt(Math.pow(paper.diameter, 2) / GOLDEN_RATIO);
-
- // some fallback values
- paper.zoomedX = paper.x;
- paper.zoomedY = paper.y;
- paper.zoomedWidth = paper.width;
- paper.zoomedHeight = paper.height;
- });
-
- return rescaledPapers;
-};
-
-const COORDS_PADDING = 5;
-
-const getInitialCoordsScale = (extent, size) => {
- const scale = d3.scale
- .linear()
- .range([COORDS_PADDING, size - COORDS_PADDING])
- .domain(extent);
-
- return (value) => scale(value);
-};
const resizePapers = (papers, currentSize, newSize, options) => {
const resizedPapers = papers.slice(0);
diff --git a/vis/js/reducers/index.js b/vis/js/reducers/index.js
index 51cbb3520..35ea8ba8b 100644
--- a/vis/js/reducers/index.js
+++ b/vis/js/reducers/index.js
@@ -32,18 +32,13 @@ import tracking from "./tracking";
import zoom from "./zoom";
export default combineReducers({
- // the data reducer has to go first because it has some side effects (it changes
- // the input data)
- // therefore the order of the reducers affects performance
- // TODO remove the side effects
- data,
- // the rest goes in the alphabetic order
animation,
areas,
bubbleOrder,
chart,
chartType,
contextLine,
+ data,
files,
heading,
highlightedBubble,
diff --git a/vis/js/reducers/list.js b/vis/js/reducers/list.js
index dcda4dc73..fb065a41e 100644
--- a/vis/js/reducers/list.js
+++ b/vis/js/reducers/list.js
@@ -11,7 +11,6 @@ const list = (
defaultSort: null,
sortOptions: [],
abstractSize: 250,
- linkType: null,
showDocumentType: false,
showMetrics: false,
isContentBased: false,
@@ -43,7 +42,6 @@ const list = (
defaultSort: getSortValue(config, context),
sortOptions: config.sort_options,
abstractSize: config.abstract_small,
- linkType: getLinkType(config, context),
showDocumentType: config.show_resulttype,
showMetrics: config.metric_list,
isContentBased: config.content_based,
@@ -101,22 +99,6 @@ const list = (
export default list;
-const getLinkType = (config, context) => {
- if (context.service === "gsheets") {
- return "covis";
- }
-
- if (config.doi_outlink) {
- return "doi";
- }
-
- if (config.url_outlink) {
- return "url";
- }
-
- return null;
-};
-
const getSortValue = (config, context) => {
if (!config.sort_options || config.sort_options.length === 0) {
return null;
diff --git a/vis/js/reducers/streamgraph.js b/vis/js/reducers/streamgraph.js
index c4dbbd621..ed7e2478a 100644
--- a/vis/js/reducers/streamgraph.js
+++ b/vis/js/reducers/streamgraph.js
@@ -7,7 +7,7 @@ const streamgraph = (state = { data: "", colors: [], visTag: "" }, action) => {
case "INITIALIZE":
return {
...state,
- data: action.streamData,
+ streams: action.streams,
colors: action.configObject.streamgraph_colors,
visTag: action.configObject.tag,
};
diff --git a/vis/js/templates/Paper.jsx b/vis/js/templates/Paper.jsx
index c37927485..fea9d7fc5 100644
--- a/vis/js/templates/Paper.jsx
+++ b/vis/js/templates/Paper.jsx
@@ -383,7 +383,7 @@ class Paper extends React.Component {
isDataset() {
const { resulttype } = this.props.data;
- return resulttype === "dataset";
+ return resulttype.includes("dataset");
}
}
diff --git a/vis/js/templates/listentry/BasicListEntry.jsx b/vis/js/templates/listentry/BasicListEntry.jsx
index 98323ba08..e250a1d24 100644
--- a/vis/js/templates/listentry/BasicListEntry.jsx
+++ b/vis/js/templates/listentry/BasicListEntry.jsx
@@ -34,7 +34,7 @@ const BasicListEntry = ({
const access = {
isOpenAccess: !!paper.oa,
isFreeAccess: !!paper.free_access,
- isDataset: paper.resulttype === "dataset",
+ isDataset: paper.resulttype.includes("dataset"),
};
const preview = {
link: getPaperPreviewLink(paper),
@@ -55,7 +55,7 @@ const BasicListEntry = ({
/>
-
+
{!!preview.showPreviewImage && !!preview.onClickPDF && (
diff --git a/vis/js/templates/listentry/ClassificationListEntry.jsx b/vis/js/templates/listentry/ClassificationListEntry.jsx
index 5fce03947..eb8fc7766 100644
--- a/vis/js/templates/listentry/ClassificationListEntry.jsx
+++ b/vis/js/templates/listentry/ClassificationListEntry.jsx
@@ -1,13 +1,7 @@
import React from "react";
import { connect } from "react-redux";
-import { useLocalizationContext } from "../../components/LocalizationProvider";
import { STREAMGRAPH_MODE } from "../../reducers/chartType";
-import {
- getPaperClassification,
- getPaperKeywords,
- getPaperTextLink,
-} from "../../utils/data";
import { mapDispatchToListEntriesProps } from "../../utils/eventhandlers";
import PaperButtons from "./PaperButtons";
@@ -28,51 +22,33 @@ import Title from "./Title";
*/
const ClassificationListEntry = ({
paper,
- linkType,
isStreamgraph,
showBacklink,
isInStreamBacklink,
handleBacklinkClick,
}) => {
- const loc = useLocalizationContext();
-
- const id = paper.safe_id;
- const access = {
- isOpenAccess: !!paper.oa,
- isFreeAccess: !!paper.free_access,
- isDataset: paper.resulttype === "dataset",
- };
- const link = getPaperTextLink(paper, linkType);
- const classification = getPaperClassification(paper, loc);
- const keywords = getPaperKeywords(paper, loc);
- const backlink = {
- show: showBacklink,
- isInStream: isInStreamBacklink,
- onClick: () => handleBacklinkClick(),
- };
-
return (
// html template starts here
-
+
- {classification}
- {keywords}
+ {paper.classification}
+ {paper.keywords}
{!isStreamgraph && }
- {!!backlink.show && (
+ {showBacklink && (
)}
@@ -81,7 +57,6 @@ const ClassificationListEntry = ({
};
const mapStateToProps = (state) => ({
- linkType: state.list.linkType,
isStreamgraph: state.chartType === STREAMGRAPH_MODE,
showBacklink: state.chartType === STREAMGRAPH_MODE && !!state.selectedPaper,
isInStreamBacklink: !!state.selectedBubble,
diff --git a/vis/js/templates/listentry/Details.jsx b/vis/js/templates/listentry/Details.jsx
index 9b401984d..e4972718b 100644
--- a/vis/js/templates/listentry/Details.jsx
+++ b/vis/js/templates/listentry/Details.jsx
@@ -3,16 +3,14 @@ import { connect } from "react-redux";
import Highlight from "../../components/Highlight";
import { useLocalizationContext } from "../../components/LocalizationProvider";
-import { getAuthorsList } from "../../utils/data";
const MAX_AUTHORS_LENGTH = 90;
const Details = ({ authors, source, isSelected }) => {
const loc = useLocalizationContext();
- const authorsList = getAuthorsList(authors);
const authorsString = getAuthorsString(
- authorsList,
+ authors,
isSelected ? Number.POSITIVE_INFINITY : MAX_AUTHORS_LENGTH
);
@@ -50,15 +48,17 @@ const getAuthorsString = (authorsList, maxLength) => {
return "";
}
+ const authorsListCopy = [...authorsList];
+
const ellipsis = "...";
const join = ", ";
- let finalString = authorsList.shift();
- while (authorsList.length > 0) {
- const nextAuthor = authorsList.shift();
+ let finalString = authorsListCopy.shift();
+ while (authorsListCopy.length > 0) {
+ const nextAuthor = authorsListCopy.shift();
let nextPossibleLength =
finalString.length + join.length + nextAuthor.length;
- if (authorsList.length !== 0) {
+ if (authorsListCopy.length !== 0) {
nextPossibleLength += ellipsis.length;
}
diff --git a/vis/js/templates/listentry/StandardListEntry.jsx b/vis/js/templates/listentry/StandardListEntry.jsx
index 7d1a9028b..d731b60a2 100644
--- a/vis/js/templates/listentry/StandardListEntry.jsx
+++ b/vis/js/templates/listentry/StandardListEntry.jsx
@@ -1,14 +1,7 @@
import React from "react";
import { connect } from "react-redux";
-import { useLocalizationContext } from "../../components/LocalizationProvider";
import { STREAMGRAPH_MODE } from "../../reducers/chartType";
-import {
- getPaperComments,
- getPaperKeywords,
- getPaperTags,
- getPaperTextLink,
-} from "../../utils/data";
import { mapDispatchToListEntriesProps } from "../../utils/eventhandlers";
import PaperButtons from "./PaperButtons";
@@ -34,7 +27,6 @@ import Title from "./Title";
const StandardListEntry = ({
// data
paper,
- linkType,
showDocumentType,
showKeywords,
showMetrics,
@@ -46,27 +38,6 @@ const StandardListEntry = ({
// event handlers
handleBacklinkClick,
}) => {
- const loc = useLocalizationContext();
-
- const id = paper.safe_id;
- const access = {
- isOpenAccess: !!paper.oa,
- isFreeAccess: !!paper.free_access,
- isDataset: paper.resulttype === "dataset",
- };
- const tags = getPaperTags(paper);
- const link = getPaperTextLink(paper, linkType);
- const documentType = showDocumentType ? paper.resulttype : null;
- const comments = getPaperComments(paper);
- const keywords = showKeywords ? getPaperKeywords(paper, loc) : null;
- const metrics = showMetrics
- ? {
- tweets: paper.cited_by_tweeters_count,
- readers: paper["readers.mendeley"],
- citations: paper.citation_count,
- baseUnit: !isContentBased ? baseUnit : null,
- }
- : null;
const backlink = {
show: showBacklink,
isInStream: isInStreamBacklink,
@@ -82,28 +53,30 @@ const StandardListEntry = ({
return (
// html template starts here
-
+
: null}
+ isOpenAccess={!!paper.oa}
+ isFreeAccess={!!paper.free_access}
+ isDataset={paper.resulttype.includes("dataset")}
+ tags={paper.tags.length > 0 ?
: null}
/>
-
-
+
+
- {!!documentType && }
+ {showDocumentType && paper.resulttype.length > 0 && (
+
+ )}
- {!!comments && }
- {!!keywords && {keywords} }
- {!!metrics && (
+ {paper.comments.length > 0 && }
+ {showKeywords && {paper.keywords} }
+ {showMetrics && (
)}
@@ -121,7 +94,6 @@ const StandardListEntry = ({
};
const mapStateToProps = (state) => ({
- linkType: state.list.linkType,
showDocumentType: state.list.showDocumentType,
showMetrics: state.list.showMetrics,
isContentBased: state.list.isContentBased,
diff --git a/vis/js/utils/PaperSanitizer.js b/vis/js/utils/PaperSanitizer.js
new file mode 100644
index 000000000..a1ac82cfe
--- /dev/null
+++ b/vis/js/utils/PaperSanitizer.js
@@ -0,0 +1,152 @@
+class PaperSanitizer {
+ config = {};
+
+ constructor(config) {
+ this.config = config;
+ }
+
+ /**
+ * Checks whether the papers have all the required props defined in the scheme.
+ *
+ * Raises a console warning when a required property is missing.
+ *
+ * @param {Array} papers papers array
+ * @param {Array} scheme scheme array
+ */
+ checkRequiredProps(papers, scheme) {
+ const requiredProps = scheme.filter((p) => p.required);
+ const missingProps = new Map();
+
+ papers.forEach((paper) => {
+ requiredProps.forEach((prop) => {
+ if (typeof paper[prop.name] === "undefined") {
+ if (!missingProps.has(prop.name)) {
+ missingProps.set(prop.name, 0);
+ }
+ missingProps.set(prop.name, missingProps.get(prop.name) + 1);
+ }
+ });
+ });
+
+ if (missingProps.size > 0) {
+ console.warn(
+ `Missing required properties found: ${[...missingProps.entries()]
+ .map(
+ (e) => `'${e[0]}' (${e[1] === papers.length ? "all" : e[1]} papers)`
+ )
+ .join(", ")}.`
+ );
+ }
+ }
+
+ /**
+ * Checks and sanitizes all properties according to the activity diagram.
+ * https://docs.google.com/drawings/d/1GBqi8ZVKwhy6n-7o6ZlsmiaBRHJ_3YFXmAi_cvDaJiA/edit
+ *
+ * Raises a console warning when a paper doesn't match the scheme.
+ *
+ * @param {Array} papers papers array
+ * @param {Array} scheme scheme array
+ *
+ * @returns sanitized papers array
+ */
+ sanitizeProps(papers, scheme) {
+ const loc = this.config.localization[this.config.language];
+
+ const wrongTypes = new Set();
+ const wrongData = new Set();
+
+ papers.forEach((paper) => {
+ scheme.forEach((prop) => {
+ // does it have a value?
+ if (typeof paper[prop.name] !== "undefined") {
+ // is the type correct?
+ if (!prop.type || prop.type.includes(typeof paper[prop.name])) {
+ // is the format correct?
+ if (!prop.validator || prop.validator(paper[prop.name])) {
+ // everything's correct!
+ return;
+ } else {
+ wrongData.add(prop.name);
+ }
+ } else {
+ wrongTypes.add(prop.name);
+ }
+ // is there a sanitization function?
+ if (prop.sanitizer) {
+ paper[prop.name] = prop.sanitizer(paper[prop.name]);
+ } else {
+ delete paper[prop.name];
+ }
+ }
+
+ // is there a fallback?
+ if (prop.fallback) {
+ this.__setFallbackValue(paper, prop.name, prop.fallback(loc, paper));
+ }
+ });
+
+ // fallback for props from config (legacy code)
+ this.config.scale_types.forEach((type) => {
+ this.__setFallbackValue(paper, type, loc.default_readers);
+ });
+ });
+
+ this.__printWrongSetWarning(wrongTypes, "Incorrect data type");
+ this.__printWrongSetWarning(wrongData, "Malformed data");
+
+ return papers;
+ }
+
+ /**
+ * Checks whether the unique paper props are actually unique.
+ *
+ * Raises a console warning when a property is non-unique.
+ *
+ * @param {Array} papers papers array
+ * @param {Array} scheme scheme array
+ */
+ checkUniqueProps(papers, scheme) {
+ const uniqueProps = scheme.filter((p) => p.unique);
+ const duplicateProps = new Set();
+
+ uniqueProps.forEach((prop) => {
+ const values = new Set();
+ papers.forEach((paper) => {
+ if (values.has(paper[prop.name])) {
+ duplicateProps.add(prop.name);
+ }
+ values.add(paper[prop.name]);
+ });
+ });
+
+ if (duplicateProps.size > 0) {
+ console.warn(
+ `Properties with duplicate values that should be unique found: `,
+ duplicateProps
+ );
+ }
+ }
+
+ __printWrongSetWarning(wrongSet, label) {
+ if (wrongSet.size > 0) {
+ console.warn(
+ `${label} found in the following properties: ${[...wrongSet.keys()]
+ .map((t) => `'${t}'`)
+ .join(", ")}.`
+ );
+ }
+ }
+
+ __setFallbackValue(paper, property, fallback) {
+ if (
+ typeof paper[property] === "undefined" ||
+ paper[property] === null ||
+ paper[property] === ""
+ ) {
+ paper[property] = fallback;
+ }
+ }
+}
+
+export default PaperSanitizer;
diff --git a/vis/js/utils/data.js b/vis/js/utils/data.js
index 66588766f..7a46c0f08 100644
--- a/vis/js/utils/data.js
+++ b/vis/js/utils/data.js
@@ -60,11 +60,11 @@ const getParamFilterFunction = (param, field) => {
}
if (param === "publication") {
- return (d) => d.resulttype === "publication";
+ return (d) => d.resulttype.includes("publication");
}
if (param === "dataset") {
- return (d) => d.resulttype === "dataset";
+ return (d) => d.resulttype.includes("dataset");
}
return () => true;
@@ -74,7 +74,13 @@ const getParamFilterFunction = (param, field) => {
return () => true;
}
- return (d) => d[field] === param;
+ return (d) => {
+ if (Array.isArray(d[field])) {
+ return d[field].includes(param);
+ }
+
+ return d[field] === param;
+ };
};
/**
@@ -209,7 +215,7 @@ export const getPaperPreviewLink = (paper) => {
export const getPaperPDFClickHandler = (paper, handlePDFClick) => {
if (
paper.oa === false ||
- paper.resulttype === "dataset" ||
+ paper.resulttype.includes("dataset") ||
paper.link === ""
) {
return null;
@@ -219,50 +225,16 @@ export const getPaperPDFClickHandler = (paper, handlePDFClick) => {
};
/**
- * Returns the paper's keywords.
- * @param {Object} paper
- * @param {Object} localization
- *
- * @returns {String} the keywords or a fallback string in current language
- */
-export const getPaperKeywords = (paper, localization) => {
- if (
- !Object.prototype.hasOwnProperty.call(paper, "subject_orig") ||
- paper.subject_orig === ""
- ) {
- return localization.no_keywords;
- }
-
- return paper.subject_orig;
-};
-
-/**
- * Returns the paper's classification.
- * @param {Object} paper
- * @param {Object} localization
+ * Returns correct link respecting the configs and link types.
*
- * @returns {String} the classification or a fallback string in current language
- */
-export const getPaperClassification = (paper, localization) => {
- if (
- !Object.prototype.hasOwnProperty.call(paper, "bkl_caption") ||
- paper.bkl_caption === ""
- ) {
- return localization.no_keywords;
- }
-
- return paper.bkl_caption;
-};
-
-/**
- * Returns the paper's text link.
- * @param {Object} paper
- * @param {String} linkType covis/url/doi/
+ * @param {object} paper paper object
+ * @param {object} config
+ * @param {object} context
*
- * @returns {Object} link object with properties 'address' and 'isDoi'
+ * @returns {object} link entry {address: string, isDoi: bool}
*/
-export const getPaperTextLink = (paper, linkType) => {
- if (linkType === "covis") {
+export const getListLink = (paper, config, context) => {
+ if (context.service === "gsheets") {
let address = paper.url;
if (typeof address !== "string" || address === "") {
address = "n/a";
@@ -270,11 +242,11 @@ export const getPaperTextLink = (paper, linkType) => {
return { address, isDoi: false };
}
- if (linkType === "url") {
+ if (config.url_outlink) {
return { address: paper.outlink, isDoi: false };
}
- if (linkType === "doi") {
+ if (config.doi_outlink) {
if (paper.doi) {
return { address: paper.doi, isDoi: true };
}
@@ -292,40 +264,6 @@ export const getPaperTextLink = (paper, linkType) => {
return {};
};
-/**
- * Returns the paper's comments.
- * @param {Object} paper
- *
- * @returns {Array} comments array or null
- */
-export const getPaperComments = (paper) => {
- let comments = paper.comments;
- if (!comments || comments.length === 0) {
- return null;
- }
-
- return comments;
-};
-
-/**
- * Returns the paper's tags.
- * @param {Object} paper
- *
- * @returns {Array} tags array or null
- */
-export const getPaperTags = (paper) => {
- if (!paper.tags) {
- return null;
- }
-
- let tags = paper.tags.split(/, |,/g).filter((tag) => !!tag);
- if (tags.length > 0) {
- return tags;
- }
-
- return null;
-};
-
/**
* Parses the paper's authors string.
*
@@ -358,82 +296,225 @@ export const getAuthorsList = (authors, firstNameFirst = true) => {
});
};
-const ATTRS_TO_CHECK = [
- "id",
- "authors",
- "title",
- "paper_abstract",
- "year",
- "oa_state",
- "subject_orig",
- "relevance",
- "x",
- "y",
- "area_uri",
- "area",
- "cluster_labels",
-];
-
-const MANDATORY_ATTRS = {
- area_uri: {
- derive: (entry) => entry.area,
- },
+/**
+ * Sanitizes paper coordinate.
+ *
+ * Function migrated from the old code (io.js).
+ *
+ * @param {string} coordinate x or y coordinate
+ * @param {number} decimalDigits number of decimals
+ *
+ * @returns sanitized coordinate
+ */
+export const parseCoordinate = (coordinate, decimalDigits) => {
+ if (isNaN(parseFloat(coordinate))) {
+ return parseFloat(0).toFixed(decimalDigits);
+ }
+
+ const fixedCoordinate = parseFloat(coordinate).toFixed(decimalDigits);
+ if (fixedCoordinate === "-" + parseFloat(0).toFixed(decimalDigits)) {
+ return parseFloat(0).toFixed(decimalDigits);
+ }
+
+ return fixedCoordinate;
};
-const ALLOWED_TYPES = {
- area_uri: ["number", "string"],
+/**
+ * Determines whether the paper is open access.
+ *
+ * Function migrated from the old code (io.js).
+ *
+ * @param {object} paper
+ * @param {object} config
+ *
+ * @returns true/false
+ */
+export const isOpenAccess = (paper, config) => {
+ if (config.service === "pubmed") {
+ return typeof paper.pmcid !== "undefined" && paper.pmcid !== "";
+ }
+
+ return parseInt(paper.oa_state) === 1;
};
/**
- * Function that sanitizes the papers in the input data array.
+ * Returns paper's open access link.
+ *
+ * Function migrated from the old code (io.js).
*
- * It checks whether some attributes are present and adds fallback values
- * for mandatory parameters.
+ * @param {object} paper
+ * @param {object} config
*
- * @param {Array} data input papers array
- * @returns {Array} sanitized papers array
+ * @returns oa link
*/
-export const sanitizeInputData = (data) => {
- let missingAttributes = new Map();
- let wrongTypes = new Set();
-
- data.forEach((entry) => {
- ATTRS_TO_CHECK.forEach((attr) => {
- if (typeof entry[attr] === "undefined") {
- if (!missingAttributes.has(attr)) {
- missingAttributes.set(attr, 0);
- }
- missingAttributes.set(attr, missingAttributes.get(attr) + 1);
-
- if (MANDATORY_ATTRS[attr]) {
- entry[attr] = MANDATORY_ATTRS[attr].derive(entry);
- }
- }
+export const getOpenAccessLink = (paper, config) => {
+ if (config.service === "pubmed") {
+ if (typeof paper.pmcid !== "undefined" && paper.pmcid !== "") {
+ return (
+ "http://www.ncbi.nlm.nih.gov/pmc/articles/" + paper.pmcid + "/pdf/"
+ );
+ }
- if (ALLOWED_TYPES[attr]) {
- if (entry[attr] && !ALLOWED_TYPES[attr].includes(typeof entry[attr])) {
- entry[attr] = entry[attr].toString();
- wrongTypes.add(attr);
- }
- }
- });
- });
+ return "";
+ }
- missingAttributes.forEach((value, key) => {
- console.warn(
- `Attribute '${key}' missing in ${
- value === data.length ? "all" : value
- } data entries.` +
- (MANDATORY_ATTRS[key] ? " Fallback value added automatically." : "")
- );
- });
+ return paper.link;
+};
- if (wrongTypes.size > 0) {
- console.warn(
- `Incorrect data types found and corrected in the following properties: `,
- wrongTypes
- );
+/**
+ * Returns paper's outlink.
+ *
+ * Function migrated from the old code (io.js) - yeah it's shitty.
+ *
+ * @param {object} paper
+ * @param {object} config
+ *
+ * @returns outlink
+ */
+export const getOutlink = (paper, config) => {
+ if (config.service === "base") {
+ return paper.oa_link;
}
- return data;
+ if (config.service === "openaire" && paper.resulttype.includes("dataset")) {
+ return config.url_prefix_datasets + paper.url;
+ }
+
+ if (config.url_prefix !== null) {
+ return config.url_prefix + paper.url;
+ }
+
+ if (typeof paper.url !== "undefined") {
+ return paper.url;
+ }
+
+ return "";
+};
+
+/**
+ * Returns displayable metric value.
+ *
+ * Function migrated from the old code (io.js).
+ *
+ * @param {object} paper
+ * @param {string} metric paper property name
+ *
+ * @returns metric value
+ */
+export const getVisibleMetric = (paper, metric) => {
+ if (Object.prototype.hasOwnProperty.call(paper, metric)) {
+ if (paper[metric] === "N/A") {
+ return "n/a";
+ }
+
+ return +paper[metric];
+ }
+};
+
+/**
+ * Returns internal metric value.
+ *
+ * Function migrated from the old code (io.js).
+ *
+ * @param {object} paper
+ * @param {string} metric paper property name
+ *
+ * @returns metric value
+ */
+export const getInternalMetric = (paper, metric) => {
+ if (!paper[metric] || paper[metric].toString().toLowerCase() === "n/a") {
+ return 0;
+ }
+
+ return +paper[metric];
+};
+
+/**
+ * Validator function for paper.year property.
+ *
+ * @param {string} date validated date string
+ * @returns {boolean}
+ */
+export const dateValidator = (date) => {
+ if (date.match(/^\d{3,4}$/)) {
+ return true;
+ }
+ if (date.match(/^\d{3,4}-\d{2}$/)) {
+ return true;
+ }
+ if (date.match(/^\d{3,4}-\d{2}-\d{2}$/)) {
+ return true;
+ }
+ if (date.match(/^\d{3,4}-\d{2}-\d{2}\w?\s*[-:\d]*\w?$/)) {
+ return true;
+ }
+
+ return false;
+};
+
+/**
+ * Validator function for paper.oa_state property.
+ * @param {string | number} oaState paper.oa_state property
+ * @returns {boolean}
+ */
+export const oaStateValidator = (oaState) =>
+ [0, 1, 2, 3].includes(parseInt(oaState));
+
+/**
+ * Validator for string array.
+ *
+ * @param {[string]} list string array
+ * @returns {boolean}
+ */
+export const stringArrayValidator = (list) => {
+ if (!Array.isArray(list)) {
+ return false;
+ }
+
+ return !list.map((e) => typeof e === "string").some((e) => !e);
+};
+
+/**
+ * Sanitization function for resulttype property.
+ *
+ * @param {any} value paper.resulttype
+ * @returns {[string]}
+ */
+export const resultTypeSanitizer = (value) => {
+ if (typeof value === "string") {
+ return [value];
+ }
+
+ return undefined;
+};
+
+const commentValidator = (e) =>
+ typeof e.comment === "string" && (!e.author || typeof e.author === "string");
+
+/**
+ * Validator for comments array.
+ *
+ * @param {[object]} list comments array
+ * @returns {boolean}
+ */
+export const commentArrayValidator = (list) => {
+ if (!Array.isArray(list)) {
+ return false;
+ }
+
+ return !list.map(commentValidator).some((e) => !e);
+};
+
+/**
+ * Sanitization function for comments property.
+ *
+ * @param {any} value paper.comments
+ * @returns {[object]}
+ */
+export const commentsSanitizer = (value) => {
+ if (!Array.isArray(value)) {
+ return undefined;
+ }
+
+ return value.filter(commentValidator);
};
diff --git a/vis/js/utils/dimensions.js b/vis/js/utils/dimensions.js
index fd44925ea..a928c1b5e 100644
--- a/vis/js/utils/dimensions.js
+++ b/vis/js/utils/dimensions.js
@@ -25,9 +25,8 @@ const FOOTER_HEIGHT = {
* container (e.g. in project website).
*
* @param {Object} config the headstart config
- * @param {Object} context the headstart context
*/
-export const getChartSize = (config, context) => {
+export const getChartSize = (config) => {
const container = $(`#${config.tag}`);
// height section
diff --git a/vis/js/utils/scale.js b/vis/js/utils/scale.js
index 2ea534dd6..02586d582 100644
--- a/vis/js/utils/scale.js
+++ b/vis/js/utils/scale.js
@@ -83,6 +83,24 @@ export const getDiameterScale = (extent, size, options) => {
return (value) => scale(value);
};
+const COORDS_PADDING = 5;
+/**
+ * Returns a scaling function that scales the papers according to the chart size.
+ *
+ * @param {Array} extent min and max paper coordinate
+ * @param {number} size chart size in px
+ *
+ * @returns scaling function
+ */
+export const getInitialCoordsScale = (extent, size) => {
+ const scale = d3.scale
+ .linear()
+ .range([COORDS_PADDING, size - COORDS_PADDING])
+ .domain(extent);
+
+ return (value) => scale(value);
+};
+
/**
* Returns a scaling function that scales any coordinates from the previous chart size
* to the new one.
diff --git a/vis/test/component/knowledgemap-base.test.js b/vis/test/component/knowledgemap-base.test.js
index dadbb5aa7..3e448c9d2 100644
--- a/vis/test/component/knowledgemap-base.test.js
+++ b/vis/test/component/knowledgemap-base.test.js
@@ -9,11 +9,9 @@ import configureStore from "redux-mock-store";
import {
initializeStore,
- updateDimensions,
hoverBubble,
applyForceAreas,
applyForcePapers,
- deselectPaper,
zoomIn,
selectPaper,
hoverPaper,
@@ -23,6 +21,7 @@ import reducer from "../../js/reducers";
import KnowledgeMap from "../../js/components/KnowledgeMap";
import data, {
+ areas,
baseConfig as config,
baseContext as context,
} from "../data/base";
@@ -38,7 +37,14 @@ const FORCE_LAYOUT_PARAMS = {
const setup = () => {
const store = createStore(reducer);
- store.dispatch(initializeStore(config, context, data, null, 500));
+ store.dispatch(
+ initializeStore(config, context, data, areas, null, 500, null, null, 500, {
+ bubbleMinScale: config.bubble_min_scale,
+ bubbleMaxScale: config.bubble_max_scale,
+ paperMinScale: config.paper_min_scale,
+ paperMaxScale: config.paper_max_scale,
+ })
+ );
const state = store.getState();
applyForce(
@@ -353,12 +359,12 @@ describe("Knowledge map component - special BASE tests", () => {
const realStore = setup();
const state = { ...realStore.getState() };
state.zoom = true;
- const bubble = state.areas.list.find(a => a.papers.length === 1);
+ const bubble = state.areas.list.find((a) => a.papers.length > 0);
state.selectedBubble = {
uri: bubble.area_uri,
};
state.selectedPaper = {
- safeId: bubble.papers[0].safe_id,
+ safeId: bubble.papers[2].safe_id,
};
const store = mockStore(state);
diff --git a/vis/test/component/list-base.test.js b/vis/test/component/list-base.test.js
index f4bc9c734..0c5d6a640 100644
--- a/vis/test/component/list-base.test.js
+++ b/vis/test/component/list-base.test.js
@@ -11,12 +11,11 @@ import data, {
baseConfig as config,
baseContext as context,
} from "../data/base";
-import { deselectPaper, initializeStore } from "../../js/actions";
+import { initializeStore } from "../../js/actions";
import List from "../../js/components/List";
import {
- selectPaper,
zoomIn,
highlightArea,
showPreview,
@@ -26,10 +25,20 @@ import {
} from "../../js/actions";
import reducer from "../../js/reducers";
import LocalizationProvider from "../../js/components/LocalizationProvider";
+import { getAuthorsList } from "../../js/utils/data";
const setup = () => {
+ data.forEach((d) => (d.authors_list = getAuthorsList(d.authors, true)));
+
const store = createStore(reducer);
- store.dispatch(initializeStore(config, context, data));
+ store.dispatch(
+ initializeStore(config, context, data, [], null, 800, null, null, 800, {
+ bubbleMinScale: config.bubble_min_scale,
+ bubbleMaxScale: config.bubble_max_scale,
+ paperMinScale: config.paper_min_scale,
+ paperMaxScale: config.paper_max_scale,
+ })
+ );
return store;
};
@@ -153,7 +162,7 @@ describe("List entries component - special BASE tests", () => {
.data.list.find(
(p) =>
p.id ===
- "15e63fc6c5dfa228a39433f46c271946c8cf45f566bb63036ed89f66ce66a5e7"
+ "18cabd2db11b6c2f6108b9fb11d07ce9ec55f2b3037f6cac6e1ea00710728958"
);
const EXPECTED_PAYLOAD = highlightArea(firstPaper);
@@ -213,7 +222,7 @@ describe("List entries component - special BASE tests", () => {
.data.list.find(
(p) =>
p.id ===
- "008ea92dafd41bdb55abf7cb8b4f43deb52ac003a2b15a8c5eb8743ae021533d"
+ "18cabd2db11b6c2f6108b9fb11d07ce9ec55f2b3037f6cac6e1ea00710728958"
);
const EXPECTED_PAYLOAD = showPreview(firstPaper);
@@ -222,7 +231,7 @@ describe("List entries component - special BASE tests", () => {
});
describe("search, filter and sort", () => {
- it("searches the list for 'sustainability education'", () => {
+ it("searches the list for 'calcium homeostasis'", () => {
const store = setup();
act(() => {
@@ -237,12 +246,12 @@ describe("List entries component - special BASE tests", () => {
});
act(() => {
- store.dispatch(search("sustainability education"));
+ store.dispatch(search("calcium homeostasis"));
});
const papers = container.querySelectorAll(".list_entry");
- expect(papers.length).toEqual(2);
+ expect(papers.length).toEqual(1);
});
it("filters the list for open access papers only", () => {
@@ -265,7 +274,7 @@ describe("List entries component - special BASE tests", () => {
const papers = container.querySelectorAll(".list_entry");
- expect(papers.length).toEqual(10);
+ expect(papers.length).toEqual(6);
});
it("sorts the list by year", () => {
@@ -306,7 +315,7 @@ describe("List entries component - special BASE tests", () => {
it("searches, filters and sorts at the same time", () => {
const store = setup();
- const SEARCH_TEXT = "Online Education";
+ const SEARCH_TEXT = "calcium silicate";
act(() => {
render(
@@ -324,7 +333,7 @@ describe("List entries component - special BASE tests", () => {
});
let papers = container.querySelectorAll(".list_entry");
- expect(papers.length).toEqual(3);
+ expect(papers.length).toEqual(4);
act(() => {
store.dispatch(filter("open_access"));
@@ -344,8 +353,8 @@ describe("List entries component - special BASE tests", () => {
);
expect(titles).toEqual([
- "Digital Education And Learning: The Growing Trend In Academic And Business Spaces—An International Overview (2018)",
- "Integrating Digital Libraries into Distance Education: A Review of Models, Roles, And Strategies (2019-04-01)",
+ "Efficacy of different calcium silicate materials as pulp-capping agents: Randomized clinical trial (2019)",
+ "Erosion and weathering of the Northern Apennines with implications for the tectonics and kinematics of the orogen (2008)",
]);
});
});
diff --git a/vis/test/component/list.test.js b/vis/test/component/list.test.js
index a7f5f3b98..5da1c8767 100644
--- a/vis/test/component/list.test.js
+++ b/vis/test/component/list.test.js
@@ -62,7 +62,6 @@ const setup = (
isContentBased: true,
baseUnit: "questions",
showRealPreviewImage: false,
- linkType: "covis",
showKeywords: true,
showDocumentType: true,
showMetrics: false,
@@ -318,7 +317,7 @@ describe("List entries component", () => {
it("renders with viper data", () => {
const storeObject = setup(
{ list: viperData },
- { show: true, showFilter: true, linkType: "url", showMetrics: true }
+ { show: true, showFilter: true, showMetrics: true }
);
const store = mockStore(storeObject);
@@ -342,7 +341,6 @@ describe("List entries component", () => {
{
show: true,
showFilter: true,
- linkType: "url",
showMetrics: true,
baseUnit: "citations",
isContentBased: false,
@@ -370,7 +368,6 @@ describe("List entries component", () => {
{
show: true,
showFilter: true,
- linkType: "url",
showMetrics: true,
baseUnit: "tweets",
isContentBased: false,
@@ -398,7 +395,6 @@ describe("List entries component", () => {
{
show: true,
showFilter: true,
- linkType: "url",
showMetrics: true,
baseUnit: "readers",
isContentBased: false,
@@ -426,7 +422,6 @@ describe("List entries component", () => {
{
show: true,
showFilter: true,
- linkType: "doi",
isContentBased: false,
baseUnit: "citations",
showMetrics: false,
@@ -454,7 +449,6 @@ describe("List entries component", () => {
{
show: true,
showFilter: true,
- linkType: "doi",
isContentBased: false,
baseUnit: "citations",
showMetrics: false,
@@ -483,7 +477,6 @@ describe("List entries component", () => {
{
show: true,
showFilter: true,
- linkType: "doi",
isContentBased: false,
baseUnit: "citations",
showMetrics: false,
@@ -512,7 +505,6 @@ describe("List entries component", () => {
{
show: true,
showFilter: true,
- linkType: "doi",
isContentBased: false,
baseUnit: "citations",
showMetrics: false,
@@ -1162,13 +1154,18 @@ describe("List entries component", () => {
url: "https://doi.org/10.1038/nrmicro2090",
readers: 0,
subject_orig: "Spike protein, vaccines",
+ keywords: "Spike protein, vaccines",
subject: "Spike protein, vaccines",
oa_state: 3,
link: "https://www.nature.com/articles/nrmicro2090.pdf",
+ list_link: {
+ address: "https://www.nature.com/articles/nrmicro2090.pdf",
+ isDoi: false,
+ },
relevance: 3,
comments: [],
- tags: "Peer-reviewed",
- resulttype: "Review",
+ tags: ["Peer-reviewed"],
+ resulttype: ["Review"],
area_uri: 0,
area: "Vaccines",
authors_string: "",
diff --git a/vis/test/data/base.js b/vis/test/data/base.js
index 60050a5af..c50bd2552 100644
--- a/vis/test/data/base.js
+++ b/vis/test/data/base.js
@@ -1,7 +1,11 @@
-const data = `[{"id":"001a8aa44f55f1d133d4ed2b0e7b4a1e4125901c84d5086b9648dded9251ed1c","relation":"doi:10.1080/18377122.2016.1222238; issn:1837-7122; issn:1837-7130; orcid:https://orcid.org/0000-0002-2888-4974; orcid:https://orcid.org/0000-0001-7206-4781","identifier":"https://espace.library.uq.edu.au/view/UQ:403365","title":"Computer says no: an analysis of three digital food education resources","paper_abstract":"What kind of thing will food education become in digitisedclassrooms? Drawn from a broader research project concernedwith the‘e turn’in school health and physical education, thispaper analyses three examples of digital food education (DEF).This is done by considering the role of digital technology inchanging–or not changing–earlier forms of food education. Ineach case, these processes are viewed as portals of connectionthrough which knowledge claims are produced, copied, merged,manipulated, juxtaposed and re-represented. Food education is,therefore, conceptualised not as the distillation of scientificknowledge, but as the uses to which this knowledge can be put.Our overall finding–that in many ways DEF is not very differentfrom that which preceded it–echoes other scholars; nutritionismdressed in digital garb is still nutritionism. However, rather thanarguing that DEF needs to adhere more faithfully to nutritionalscience, we argue the reverse; that digital technology has the as yetunmet potential to move food education away from nutritionalscience towards something more intellectually rich and educationallyengaging","published_in":"","year":"2016-08-26","subject_orig":"Digital games; Digital food education; Digitised classrooms; Health and physical education; Actor network theory; 2732 Orthopedics and Sports Medicine; 3304 Education; 3612 Physical Therapy; Sports Therapy and Rehabilitation","subject":"Digital games; Digital food education; Digitised classrooms; Health and physical education; Actor network theory; Sports Therapy and Rehabilitation","authors":"Gard, Michael; Enright, Eimear","link":"https://espace.library.uq.edu.au/view/UQ:403365","oa_state":"2","url":"001a8aa44f55f1d133d4ed2b0e7b4a1e4125901c84d5086b9648dded9251ed1c","relevance":51,"lang_detected":"english","cluster_labels":"Decision support, Digital food education, Education revolution","x":"0.03360574","y":"-0.01638502","area_uri":3,"area":"Decision support, Digital food education, Education revolution","file_hash":"hashHash","readers":0,"comments":[],"authors_string":"Michael Gard, Eimear Enright","authors_short_string":"M. 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Ineach case, these processes are viewed as portals of connectionthrough which knowledge claims are produced, copied, merged,manipulated, juxtaposed and re-represented. Food education is,therefore, conceptualised not as the distillation of scientificknowledge, but as the uses to which this knowledge can be put.Our overall finding–that in many ways DEF is not very differentfrom that which preceded it–echoes other scholars; nutritionismdressed in digital garb is still nutritionism. 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Education Technology, E-Learning, Online Education, Blended Learning and as a whole this concept and this area may be called as a Digital Education/ Digital Learning. Internationally many universities have started educational programs leading to Bachelors and Masters Degree in respect of Digital Education and its subfields (mentioned above). The awards are offered in different subjects and are tagged with concentration and major in this area. The Digital Education becomes an important area of research as well due to its importance, many universities have started research program leading to PhD and other professional doctorate degrees. This study is concentrated on Masters degrees in the field of Digital Education and Digital Learning which are available internationally, based on selected research methodologies. 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The findings revealed that from 24 observed variables, there were 7 competency components.: 1) Fundamental of digital; 2) Accessing digital information; 3) Using digital information; 4) Creating digital information and media; 5) Communicating digital information; 6) Managing digital information; and 7) Evaluating digital information. The discovery from this study was substantially constructive for Thai higher education institutions as it could be used to design an essential digital competency framework of the 21st century ; Peer Reviewed","published_in":"","year":"2019-09","subject_orig":"Àrees temàtiques de la UPC::Ensenyament i aprenentatge::TIC's aplicades a l'educació; Àrees temàtiques de la UPC::Ensenyament i aprenentatge::Habilitats personals i competències; Competency-based education; Educational evaluation; Education -- Research; Confirmatory factor analysis (CFA); Digital competency; Undergraduate students; Thai higher education institution; Competències professionals -- Ensenyament; Avaluació educativa; Educació -- Investigació","subject":" Competency-based education; Educational evaluation; Education; Research; Confirmatory factor analysis (CFA); Digital competency; Undergraduate students; Thai higher education institution; Competències professionals; Ensenyament; Avaluació educativa; Educació; Investigació","authors":"Suwanroj, Thamasan; Leekitchwatana, Punnee; Pimdee, Paitoon","link":"http://hdl.handle.net/2117/172239","oa_state":"1","url":"0857d58c8cd0cc73f7f8567270bbd44fdee9a9cfb1ba4c0affc6287ad54e884d","relevance":92,"lang_detected":"english","cluster_labels":"Higher education institutions, Digital inclusion, Higher education students","x":"-0.02835100","y":"0.03024628","area_uri":5,"area":"Higher education institutions, Digital inclusion, Higher education students","file_hash":"hashHash","readers":0,"comments":[],"authors_string":"Thamasan Suwanroj, Punnee Leekitchwatana, Paitoon Pimdee","authors_short_string":"T. 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El diseño de la experiencia se apoya en dos ejes principales; por una parte, en la propuesta de Porfolio para la Competencia Digital del profesorado aprobada por la Secretaría de Educación de Extremadura en el 2015, que adapta al ámbito educativo las competencias propuestas por el proyecto europeo DIGCOMP; por otra, en los principios del aprendizaje situado y aprendizaje basado en problemas (ABP). Se muestran algunos ejemplos del trabajo realizado por el alumnado relacionados con la adquisición de las competencias digitales. ; Digital competence is considered key to achieving digital citizenship. This work shows how this competence is developped in the initial training for teacher of early childhood education. The experience design is based on two main axes: the proposed Porfolio for Digital Competence of teachers approved by the Department of Education of Extremadura in 2015, adapting the competences proposed by the European project DIGCOMP to the education field and the principles of situated learning and problem-based learning (PBL). Some examples of student work related to the acquisition of digital skills are shown.","published_in":"","year":"2018-01-12T14:18:08Z","subject_orig":"Tecnología Educativa; Competencia digital; Competencias del docente; Formación del profesorado; Educational Technology; Digital competence; Teacher qualifications; Teacher education","subject":"Tecnología Educativa; Competencia digital; Competencias del docente; Formación del profesorado; Educational Technology; Digital competence; Teacher qualifications; Teacher education","authors":"Aristizabal Llorente, Pilar; Cruz Iglesias, Esther","link":"https://idus.us.es/xmlui/handle/11441/68940","oa_state":"1","url":"119812ba34b725795691e22d5339e00d46277121067311fb77af48de801b5dfb","relevance":16,"lang_detected":"spanish","cluster_labels":"Digital competence, Teacher education, Competencia digital","x":"-0.22487353","y":"0.09377806","area_uri":11,"area":"Digital competence, Teacher education, Competencia digital","file_hash":"hashHash","readers":0,"comments":[],"authors_string":"Pilar Aristizabal Llorente, Esther Cruz Iglesias","authors_short_string":"P. 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The experience design is based on two main axes: the proposed Porfolio for Digital Competence of teachers approved by the Department of Education of Extremadura in 2015, adapting the competences proposed by the European project DIGCOMP to the education field and the principles of situated learning and problem-based learning (PBL). 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However, whether these concepts carry similar meanings, and are understood in a similar way, across languages and cultures is not self-evident. By taking the curricula in Sweden, Denmark, Finland, and Norway as examples, this article attempts to clarify similarities and differences in how the concepts are interpreted, as well as what implications this has for the digitalization of education. The analyses reveal that different terms are used in the curricula in the different countries, which are connected to themes or interdisciplinary issues to be incorporated into school subjects. 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Design/methodology/approach – The paper draws on relevant literature in the field of sustainability education and in the field of digital literacies and digital ethics. It synthesizes perspectives in both fields to form a conceptualization of digital literacies and digital ethics for sustainability education. Findings – The paper conceptualizes “digital literacies” as a capacity to reflect on the nature of digital space in relation to sustainability challenges and “digital ethics” as a capacity to reflexively engage with digital space in ways which build rich discourses around sustainability. Critically reflective and exploratory activities in digital space are a means of developing these capacities. Originality/value – The conceptualization allows sustainability education to account for the increased role digital space plays in shaping views of sustainability challenges. It proposes a pedagogical approach to doing this.","published_in":"Brown , S 2014 , ' Conceptualizing digital literacies and digital ethics for sustainability education ' International Journal of Sustainability in Higher Education , vol 15 , no. 3 , pp. 280-290 . 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Design/methodology/approach – The paper draws on relevant literature in the field of sustainability education and in the field of digital literacies and digital ethics. It synthesizes perspectives in both fields to form a conceptualization of digital literacies and digital ethics for sustainability education. Findings – The paper conceptualizes “digital literacies” as a capacity to reflect on the nature of digital space in relation to sustainability challenges and “digital ethics” as a capacity to reflexively engage with digital space in ways which build rich discourses around sustainability. Critically reflective and exploratory activities in digital space are a means of developing these capacities. Originality/value – The conceptualization allows sustainability education to account for the increased role digital space plays in shaping views of sustainability challenges. 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This paper focuses on the confluence between globalised economic process, the Digital Education Revolution, and the discourse of the digital native; and describes the way in which students’ use of digital technologies is identity forming. I examine the Digital Education Revolution policy and related discourse in order to sketch out some of the educational implications. Drawing upon Giroux’s (2004) notion of ‘public pedagogy’ I argue that using digital technologies could potentially open up an educative space to allow students to author their own digital identity. While the Digital Education Revolution is a product of the influence of globalisation upon education, it, nonetheless, contains contradictory prohibitions and possibilities that can be utilised to take the use of digital technology beyond that of preparing students for work in a globalised information economy.","published_in":"","year":"2011","subject_orig":"Digital Education Revolution; digital technology; digital natives; public pedagogy; teaching","subject":"Digital Education Revolution; digital technology; digital natives; public pedagogy; teaching","authors":"Buchanan, Rachel","link":"http://hdl.handle.net/1959.13/934096","oa_state":"2","url":"177e10315a766b466983744e51501b8106cea5bad68d8f907628f237f5d9ef65","relevance":115,"lang_detected":"english","cluster_labels":"Digital citizenship, Digital education revolution, Digital literacies","x":"-0.07009118","y":"0.01346816","area_uri":1,"area":"Digital citizenship, Digital education revolution, Digital literacies","file_hash":"hashHash","readers":0,"comments":[],"authors_string":"Rachel Buchanan","authors_short_string":"R. Buchanan","safe_id":"177e10315a766b466983744e51501b8106cea5bad68d8f907628f237f5d9ef65","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"oa_link":"http://hdl.handle.net/1959.13/934096","outlink":"http://hdl.handle.net/1959.13/934096","comments_for_filtering":"","title_sort":"Paradox, promise and public pedagogy: implications of the federal government's Digital Education Revolution","authors_string_sort":"Rachel Buchanan","paper_abstract_sort":"The use of digital technology in the classroom is a significant issue for teachers as they are under increasing pressure to teach in technologically mediated ways. This ‘digital turn’ in education has culminated in the Australian federal government’s Digital Education Revolution, which represents a multi-billion dollar commitment to putting computers in schools and the implementation of technological pedagogical practice. This paper focuses on the confluence between globalised economic process, the Digital Education Revolution, and the discourse of the digital native; and describes the way in which students’ use of digital technologies is identity forming. I examine the Digital Education Revolution policy and related discourse in order to sketch out some of the educational implications. Drawing upon Giroux’s (2004) notion of ‘public pedagogy’ I argue that using digital technologies could potentially open up an educative space to allow students to author their own digital identity. While the Digital Education Revolution is a product of the influence of globalisation upon education, it, nonetheless, contains contradictory prohibitions and possibilities that can be utilised to take the use of digital technology beyond that of preparing students for work in a globalised information economy.","year_sort":"2011","published_in_sort":"","subject_orig_sort":"Digital Education Revolution; digital technology; digital natives; public pedagogy; teaching","resized":false},{"id":"1bc3a3358f7da6edb767ad1c91ac28f38573160ffca7c66594a7234db03258a9","relation":"Association for the Advancement of Computing in Education (AACE); 978-1-939797-08-7; http://hdl.handle.net/11189/3465; https://www.editlib.org/p/147705/","identifier":"http://hdl.handle.net/11189/3465; https://www.editlib.org/p/147705/","title":"Using digital storytelling to prepare new teachers for multicultural and digital natives' classrooms.","paper_abstract":"The 21 Century learners are said to be digital natives. They have increased exposure to new technologies such that are more skilled than their teachers in the use of digital technologies. Coincidentally, many classrooms in big cities are also multicultural. The aim of this paper is to analyse how digital storytelling project could help pre-service teachers preparing for classrooms which are both multicultural and digital native. A qualitative study was employed whereby fourteen students who participated in the digital storytelling project were purposively picked to take part in a focus group interviews. According to the pre-service teachers, in this study, digital storytelling project should be integrated in teacher education curriculum to equip new teachers with the skills they need to face the digital native and multicultural classrooms. The project helped the pre-service teachers to understand other peoples’ culture and also enhanced their digital technology skills.","published_in":"","year":"2014","subject_orig":"Classrooms; Multicultural education","subject":"Classrooms; Multicultural education","authors":"Chigona, Agnes","link":"http://hdl.handle.net/11189/3465","oa_state":"1","url":"1bc3a3358f7da6edb767ad1c91ac28f38573160ffca7c66594a7234db03258a9","relevance":25,"lang_detected":"english","cluster_labels":"Digital storytelling, Citizenship education, Distance education","x":"-0.29510266","y":"0.04898759","area_uri":12,"area":"Digital storytelling, Citizenship education, Distance education","file_hash":"hashHash","readers":0,"comments":[],"authors_string":"Agnes Chigona","authors_short_string":"A. Chigona","safe_id":"1bc3a3358f7da6edb767ad1c91ac28f38573160ffca7c66594a7234db03258a9","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/11189/3465","outlink":"http://hdl.handle.net/11189/3465","comments_for_filtering":"","title_sort":"Using digital storytelling to prepare new teachers for multicultural and digital natives' classrooms.","authors_string_sort":"Agnes Chigona","paper_abstract_sort":"The 21 Century learners are said to be digital natives. They have increased exposure to new technologies such that are more skilled than their teachers in the use of digital technologies. Coincidentally, many classrooms in big cities are also multicultural. The aim of this paper is to analyse how digital storytelling project could help pre-service teachers preparing for classrooms which are both multicultural and digital native. A qualitative study was employed whereby fourteen students who participated in the digital storytelling project were purposively picked to take part in a focus group interviews. According to the pre-service teachers, in this study, digital storytelling project should be integrated in teacher education curriculum to equip new teachers with the skills they need to face the digital native and multicultural classrooms. The project helped the pre-service teachers to understand other peoples’ culture and also enhanced their digital technology skills.","year_sort":"2014","published_in_sort":"","subject_orig_sort":"Classrooms; Multicultural education","resized":false},{"id":"1ceeb14a8284a438b441c9145cb93ee7c7144a28b63a4ffdd039a9a02377c346","relation":"","identifier":"https://ro.ecu.edu.au/ajte/vol37/iss4/5; https://ro.ecu.edu.au/cgi/viewcontent.cgi?article=1765&context=ajte","title":"Developing The Vision: Preparing Teachers To Deliver A Digital World-Class Education System","paper_abstract":"In 2008 Australians were promised a ‘Digital Education Revolution’ by the government to dramatically change classroom education and build a ‘world-class education system’. Eight billion dollars have been spent providing computer equipment for upper secondary classrooms, yet there is little evidence that a revolution has occurred in Australian schools. Transformation of an education system takes more than a simplistic hardware solution. Revolutions need leaders and leaders need vision. In this paper, I argue that we must first develop educational leaders by inspiring future teachers with a vision and by designing our teacher-education courses as technology-rich learning-spaces. A multi-layered scenario is developed as the inspiration for a vision of a future-orientated teacher-education system that prepares teachers to deliver a ‘world-class digital education’ for every Australian child. Although written for the Australian context this paper has broad relevance internationally for teacher education.","published_in":"Australian Journal of Teacher Education","year":"2012-04-01T07:00:00Z","subject_orig":"TEACHER EDUCATION; FUTURE PLANNING; CAUSAL LAYER ANALYSIS; ICT; DIGITAL; EDUCATION REVOLUTION; Education; Teacher Education and Professional Development","subject":"TEACHER EDUCATION; FUTURE PLANNING; CAUSAL LAYER ANALYSIS; ICT; DIGITAL; EDUCATION REVOLUTION; Education; Teacher Education and Professional Development","authors":"Lane, Jenny M","link":"https://ro.ecu.edu.au/ajte/vol37/iss4/5","oa_state":"2","url":"1ceeb14a8284a438b441c9145cb93ee7c7144a28b63a4ffdd039a9a02377c346","relevance":114,"lang_detected":"english","cluster_labels":"Decision support, Digital food education, Education revolution","x":"0.13039143","y":"-0.02235601","area_uri":3,"area":"Decision support, Digital food education, Education revolution","file_hash":"hashHash","readers":0,"comments":[],"authors_string":"Jenny M Lane","authors_short_string":"J. Lane","safe_id":"1ceeb14a8284a438b441c9145cb93ee7c7144a28b63a4ffdd039a9a02377c346","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"oa_link":"https://ro.ecu.edu.au/ajte/vol37/iss4/5","outlink":"https://ro.ecu.edu.au/ajte/vol37/iss4/5","comments_for_filtering":"","title_sort":"Developing The Vision: Preparing Teachers To Deliver A Digital World-Class Education System","authors_string_sort":"Jenny M Lane","paper_abstract_sort":"In 2008 Australians were promised a ‘Digital Education Revolution’ by the government to dramatically change classroom education and build a ‘world-class education system’. Eight billion dollars have been spent providing computer equipment for upper secondary classrooms, yet there is little evidence that a revolution has occurred in Australian schools. Transformation of an education system takes more than a simplistic hardware solution. Revolutions need leaders and leaders need vision. In this paper, I argue that we must first develop educational leaders by inspiring future teachers with a vision and by designing our teacher-education courses as technology-rich learning-spaces. A multi-layered scenario is developed as the inspiration for a vision of a future-orientated teacher-education system that prepares teachers to deliver a ‘world-class digital education’ for every Australian child. Although written for the Australian context this paper has broad relevance internationally for teacher education.","year_sort":"2012-04-01T07:00:00Z","published_in_sort":"Australian Journal of Teacher Education","subject_orig_sort":"TEACHER EDUCATION; FUTURE PLANNING; CAUSAL LAYER ANALYSIS; ICT; DIGITAL; EDUCATION REVOLUTION; Education; Teacher Education and Professional Development","resized":false},{"id":"23f1739d2f39a41b3aebb4e7d3dbf751ba9741d5c2957bf88dd59684c8236bb4","relation":"https://www.ajol.info/index.php/saje/article/view/173120/162531","identifier":"https://www.ajol.info/index.php/saje/article/view/173120","title":"Teacher education students engaging with digital identity narratives","paper_abstract":"Teaching English with digital technology has exacerbated the process of teaching and learning. In youth leisure, computers are more than information devices: they convey stories, images, identities, and fantasies through providing imaginative opportunities for play, and as cultural and ideological forms. In this paper, I report on a project conducted with teacher education students at a university in Johannesburg, South Africa. The focus of the project is to examine how students construct their identities digitally through the multimodal narratives they create in the English classroom. To do this I report on two narratives, as well as a recurring theme, decolonisation. The latter theme is significant because it was during the time of this project that South African universities found themselves in the grip of decolonisation and free education protests. I use New Literacy Studies as a framework to theorise literacy practices, and the work of Hall and others to theorise identity. The paper presents further possible implications of digital identity construction for teaching and learning.Keywords: decolonization; digital identities; digital literacies; digital narratives; higher education; South Africa","published_in":"South African Journal of Education; Vol 38, No 2 (2018); 1-9 ; 2076-3433 ; 0256-0100","year":"2018-06-14","subject_orig":"decolonization; digital identities; digital literacies; digital narratives; higher education; South Africa","subject":"decolonization; digital identities; digital literacies; digital narratives; higher education; South Africa","authors":"Kajee, Leila","link":"https://www.ajol.info/index.php/saje/article/view/173120","oa_state":"1","url":"23f1739d2f39a41b3aebb4e7d3dbf751ba9741d5c2957bf88dd59684c8236bb4","relevance":42,"lang_detected":"english","cluster_labels":"Digital citizenship, Digital education revolution, Digital literacies","x":"-0.17067020","y":"0.03689303","area_uri":1,"area":"Digital citizenship, Digital education revolution, Digital literacies","file_hash":"hashHash","readers":0,"comments":[],"authors_string":"Leila Kajee","authors_short_string":"L. Kajee","safe_id":"23f1739d2f39a41b3aebb4e7d3dbf751ba9741d5c2957bf88dd59684c8236bb4","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://www.ajol.info/index.php/saje/article/view/173120","outlink":"https://www.ajol.info/index.php/saje/article/view/173120","comments_for_filtering":"","title_sort":"Teacher education students engaging with digital identity narratives","authors_string_sort":"Leila Kajee","paper_abstract_sort":"Teaching English with digital technology has exacerbated the process of teaching and learning. In youth leisure, computers are more than information devices: they convey stories, images, identities, and fantasies through providing imaginative opportunities for play, and as cultural and ideological forms. In this paper, I report on a project conducted with teacher education students at a university in Johannesburg, South Africa. The focus of the project is to examine how students construct their identities digitally through the multimodal narratives they create in the English classroom. To do this I report on two narratives, as well as a recurring theme, decolonisation. The latter theme is significant because it was during the time of this project that South African universities found themselves in the grip of decolonisation and free education protests. I use New Literacy Studies as a framework to theorise literacy practices, and the work of Hall and others to theorise identity. The paper presents further possible implications of digital identity construction for teaching and learning.Keywords: decolonization; digital identities; digital literacies; digital narratives; higher education; South Africa","year_sort":"2018-06-14","published_in_sort":"South African Journal of Education; Vol 38, No 2 (2018); 1-9 ; 2076-3433 ; 0256-0100","subject_orig_sort":"decolonization; digital identities; digital literacies; digital narratives; higher education; South Africa","resized":false},{"id":"255431ea0964dee1eea14564e2820060498851ec19acdde3694a2035cb29a1d8","relation":"http://journals.ru.lv/index.php/ER/article/view/4213/4188; http://journals.ru.lv/index.php/ER/article/view/4213; doi:10.17770/er2019.1.4213","identifier":"http://journals.ru.lv/index.php/ER/article/view/4213; https://doi.org/10.17770/er2019.1.4213","title":"DIGITAL COMPETENCE IN THE CONTEXT OF LEARNING CONCEPTUAL ASPECTS IN HIGHER EDUCATION INSTITUTIONS","paper_abstract":"Media and new technologies integration into the learning process of higher educational institutions stimulates the necessity for the development of digital competence. However, the evaluation of digital competence is required before working out and offering the new programs for the improvement of digital competence. This article will review the issue of digital competence focusing on the analyses of its evaluation instruments such as \\"Attitudes toward Information Technologies (IT) Scale\\" and \\"Self-appraisal form\\". It is the preliminary result of on going applied research of RTA Research Institute for Regional Studies (RIRS). The aim of this research is to adopt \\"A-IT Scale\\" to Latvian conditions and to define students and lecturers of Latvian higher educational institutions attitudes towards IT as the necessity for digital competence improvement in the context of learning conceptual aspects in higher education institutions.","published_in":"Education Reform: Education Content Research and Implementation Problems; Vol 1 (2019): Education Reform: Education Content Research and Implementation Problems; 67-78 ; 2661-5266 ; 2661-5258","year":"2019-05-23","subject_orig":"learning process in higher education; digital competence; higher education institutions; digital competence evaluation","subject":"learning process in higher education; digital competence; higher education institutions; digital competence evaluation","authors":"Vindača, Olga","link":"http://journals.ru.lv/index.php/ER/article/view/4213","oa_state":"1","url":"255431ea0964dee1eea14564e2820060498851ec19acdde3694a2035cb29a1d8","relevance":72,"lang_detected":"english","cluster_labels":"Higher education institutions, Digital inclusion, Higher education students","x":"-0.01376514","y":"0.03317152","area_uri":5,"area":"Higher education institutions, Digital inclusion, Higher education students","file_hash":"hashHash","readers":0,"comments":[],"authors_string":"Olga Vindača","authors_short_string":"O. 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This article will review the issue of digital competence focusing on the analyses of its evaluation instruments such as \\"Attitudes toward Information Technologies (IT) Scale\\" and \\"Self-appraisal form\\". It is the preliminary result of on going applied research of RTA Research Institute for Regional Studies (RIRS). The aim of this research is to adopt \\"A-IT Scale\\" to Latvian conditions and to define students and lecturers of Latvian higher educational institutions attitudes towards IT as the necessity for digital competence improvement in the context of learning conceptual aspects in higher education institutions.","year_sort":"2019-05-23","published_in_sort":"Education Reform: Education Content Research and Implementation Problems; Vol 1 (2019): Education Reform: Education Content Research and Implementation Problems; 67-78 ; 2661-5266 ; 2661-5258","subject_orig_sort":"learning process in higher education; digital competence; higher education institutions; digital competence evaluation","resized":false},{"id":"2781155d5ca7cfc418817dcd81659c4eae936a5dc8165fa136f46c8d02330dce","relation":"http://digital.lib.ecu.edu/sustainable.aspx","identifier":"http://hdl.handle.net/10342/1956","title":"The Unplugged Office Space and the Role of Sustainable Design in Higher Education","paper_abstract":"This article looks at sustainability in higher education and office environments, specifically proposing a green redesign of the Greenville, NC V.O.A. site.","published_in":"","year":"2008","subject_orig":"Sustainable design; Higher education; LEED; Undergraduate research; Visual arts and design","subject":"Sustainable design; Higher education; LEED; Undergraduate research; Visual arts and design","authors":"Stewart, Alicia; Radspinner, Krista","link":"http://hdl.handle.net/10342/1956","oa_state":"2","url":"2781155d5ca7cfc418817dcd81659c4eae936a5dc8165fa136f46c8d02330dce","relevance":8,"lang_detected":"english","cluster_labels":"Information commons, Metadata education, Public education","x":"0.38284418","y":"0.19723912","area_uri":6,"area":"Information commons, Metadata education, Public education","file_hash":"hashHash","readers":0,"comments":[],"authors_string":"Alicia Stewart, Krista Radspinner","authors_short_string":"A. 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Bedrock rivers are dynamic topographic features and a critical link between these processes, as they record and convey changes in tectonics, climate, and sea level across the landscape. River incision models, such as the stream power model, are often used to quantify the relationship between topography and rock motion in the context of landscapes at steady state. At steady state, the stream power model predicts higher denudation rates for steeper river channels, while accounting for only the vertical motion of rock due to rock uplift or denudation. However, natural landscapes often have more complicated histories, particularly in convergent orogens with asymmetric topography, where steady state requires that denudation must balance both vertical and horizontal rock motion. This thesis addresses this central issue by comparing the spatial and temporal pattern of denudation with metrics of topographic steepness in the Northern Apennine Mountains of Italy, a young and active orogen with asymmetric topography. New and existing catchment-averaged denudation rates from cosmogenic 10Be concentrations demonstrate that the steeper flank of the Northern Apennines is eroding more slowly than the gentler flank. Long-term denudation rates inverted from low-temperature thermochronometers show that this pattern of denudation across the orogen is long-lived, since at the least 3—5 Ma, and that denudation rates have decreased on the Ligurian side through time. The apparent decoupling between denudation rates and topography is resolved with a kinematic model of the orogenic wedge that accounts for the full vertical and horizontal rock velocity field. This model reconciles the 10Be concentrations, geomorphic observations, and geodetic rates of rock motion with the topography of the Northern Apennines, and provides new estimates for slab retreat rates consistent with recent estimates from tomography, surface geology, and morphology. This thesis also explores the partitioning of denudation into physical erosion and chemical weathering in the Northern Apennines. Chemical weathering in particular is an important control on landscape evolution and the global CO2 budget. Most studies have focused on weathering in orogens comprised of silicate-rich lithologies, which can remove CO2 from the atmosphere over geologic timescales, whereas carbonate weathering is generally considered to be CO2 neutral. However, even in silicate-rich landscapes, carbonate weathering dominates total solute fluxes. Recently uplifted orogens in particular are often characterized by carbonate-rich, marine sedimentary sequences, so the global weathering flux of carbon and calcium to the oceans should be more strongly influenced by these orogens. However, the partitioning of denudation fluxes remains largely unexplored in mixed lithology orogens, so, it is unclear whether the same processes that control erosion and weathering apply to both silicate-rich and mixed lithology settings. Here, denudation fluxes from the Northern Apennines are partitioned into carbonate and silicate chemical weathering and physical erosion fluxes. These fluxes demonstrate that denudation is dominated by physical erosion of both silicate and carbonate rocks; carbonate physical erosion is controlled by lithology; weathering fluxes are dominated by carbonate dissolution; and denudation is negatively correlated with runoff. Finally, denudation fluxes from the Northern Apennines are similar to other temperature mountain ranges (e.g. Southern Alps of New Zealand), although total weathering fluxes from this study are generally higher, due to greater carbonate weathering fluxes. The results from this thesis challenge current interpretations regarding denudation rates through space and time and contribute to a broader understanding of surface and crustal processes in the Northern Apennines.","published_in":"","year":"2008","subject_orig":"info:eu-repo/classification/ddc/550; Earth sciences","subject":"classification; Earth sciences","authors":"Erlanger, Erica","link":"http://hdl.handle.net/20.500.11850/393261","oa_state":"1","url":"0c57f833611c8bad0e4cdb5d68d592315ba3b85ef437932a5ff2db21790c934b","relevance":47,"resulttype":["Thesis: doctoral and postdoctoral"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-407.6043812452111,"y":-517.330375719018,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"0c57f833611c8bad0e4cdb5d68d592315ba3b85ef437932a5ff2db21790c934b","authors_list":["Erica Erlanger"],"authors_string":"Erica Erlanger","oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/20.500.11850/393261","outlink":"http://hdl.handle.net/20.500.11850/393261","list_link":{"address":"http://hdl.handle.net/20.500.11850/393261","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"info:eu-repo/classification/ddc/550; Earth sciences","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-407.6043812452111,"zoomedY":-517.330375719018,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"102e53cc31c856e18170a1a7dbd35871d49dd80712a993aa32f717600fdbd281","relation":"OTOLOGY & NEUROTOLOGY; Cinar Z., Edizer D. T. , Yigit O., Altunay Z. O. , GÜL M., Atas A., \\"Does Calcium Dobesilate Have Therapeutic Effect on Gentamicin-induced Cochlear Nerve Ototoxicity? An Experimental Study\\", OTOLOGY & NEUROTOLOGY, cilt.41, 2020; 1531-7129; vv_1032021; av_b4b78ea8-face-41db-be48-1a8aa9300d2d; http://hdl.handle.net/20.500.12627/2022; https://doi.org/10.1097/mao.0000000000002820; 41; 10","identifier":"http://hdl.handle.net/20.500.12627/2022; https://doi.org/10.1097/mao.0000000000002820","title":"Does Calcium Dobesilate Have Therapeutic Effect on Gentamicin-induced Cochlear Nerve Ototoxicity? An Experimental Study","paper_abstract":"Hypothesis: The ototoxic effects of aminoglycosides are well known. Gentamicin carries a substantial risk of hearing loss. Gentamicin is widely used to combat life-threatening infections, despite its ototoxic effects. Calcium dobesilate is a pharmacologically active agent used to treat many disorders due to its vasoprotective and antioxidant effects. We investigated the therapeutic role of calcium dobesilate against gentamicin-induced cochlear nerve ototoxicity in an animal model. Methods: Thirty-two Sprague Dawley rats were divided into four groups: Gentamicin, Gentamicin + Calcium Dobesilate, Calcium Dobesilate, and Control. Preoperative and postoperative hearing thresholds were determined using auditory brainstem response thresholds with click and 16-kHz tone-burst stimuli. Histological analysis of the tympanic bulla specimens was performed under light and transmission electron microscopy. The histological findings were subjected to semiquantitative grading, of which the results were compared between the groups. Results: Gentamicin + Calcium Dobesilate group had, on average, 27 dB better click-evoked hearing than Gentamicin group (p 0.01). Histologically examining the Control and Calcium Dobesilate groups revealed normal ultrastructural appearances. The Gentamicin group showed the most severe histological alterations including myelin destruction, total axonal degeneration, and edema. The histological evidence of damage was significantly reduced in the Gentamicin + Calcium Dobesilate group compared with the Gentamicin group. Conclusion: Adding oral calcium dobesilate to systemic gentamicin was demonstrated to exert beneficial effects on click-evoked hearing thresholds, as supported by the histological findings.","published_in":"","year":"2010","subject_orig":"Cerrahi Tıp Bilimleri; Kulak Burun Boğaz; Dahili Tıp Bilimleri; Nöroloji; Sağlık Bilimleri; Tıp; Klinik Tıp (MED); Klinik Tıp; KLİNİK NEUROLOJİ","subject":"Cerrahi Tıp Bilimleri; Kulak Burun Boğaz; Dahili Tıp Bilimleri; Nöroloji; Sağlık Bilimleri; Tıp; Klinik Tıp (MED); Klinik Tıp; KLİNİK NEUROLOJİ","authors":"Yigit, Ozgur; Atas, Ahmet; Edizer, Deniz Tuna; Altunay, Zeynep Onerci; GÜL, MEHMET; Cinar, Zehra","link":"http://hdl.handle.net/20.500.12627/2022","oa_state":"2","url":"102e53cc31c856e18170a1a7dbd35871d49dd80712a993aa32f717600fdbd281","relevance":32,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","x":-295.86026785880813,"y":356.62839103116636,"area_uri":13,"area":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"102e53cc31c856e18170a1a7dbd35871d49dd80712a993aa32f717600fdbd281","authors_list":["Ozgur Yigit","Ahmet Atas","Deniz Tuna Edizer","Zeynep Onerci Altunay","MEHMET GÜL","Zehra Cinar"],"authors_string":"Ozgur Yigit, Ahmet Atas, Deniz Tuna Edizer, Zeynep Onerci Altunay, MEHMET GÜL, Zehra Cinar","oa":false,"free_access":false,"oa_link":"http://hdl.handle.net/20.500.12627/2022","outlink":"http://hdl.handle.net/20.500.12627/2022","list_link":{"address":"http://hdl.handle.net/20.500.12627/2022","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Cerrahi Tıp Bilimleri; Kulak Burun Boğaz; Dahili Tıp Bilimleri; Nöroloji; Sağlık Bilimleri; Tıp; Klinik Tıp (MED); Klinik Tıp; KLİNİK NEUROLOJİ","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-295.86026785880813,"zoomedY":356.62839103116636,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"105d3c6168ff9c861167d3bf7d23998b6f4736766e45abeef5a5e12dbbf98f9e","relation":"","identifier":"http://dx.doi.org/10.1016/j.jmrt.2020.10.054; https://api.elsevier.com/content/article/PII:S223878542031913X?httpAccept=text/xml; https://api.elsevier.com/content/article/PII:S223878542031913X?httpAccept=text/plain","title":"Fabrication of spherical Ti–6Al–4V powder for additive manufacturing by radio frequency plasma spheroidization and deoxidation using calcium","paper_abstract":"No abstract available","published_in":"Journal of Materials Research and Technology ; volume 9, issue 6, page 14792-14798 ; ISSN 2238-7854","year":"2011","subject_orig":"not available","subject":"additive manufacturing; al v; deoxidation calcium","authors":"Li, Jing; Hao, Zhenhua; Shu, Yongchun; He, Jilin","link":"http://dx.doi.org/10.1016/j.jmrt.2020.10.054","oa_state":"1","url":"105d3c6168ff9c861167d3bf7d23998b6f4736766e45abeef5a5e12dbbf98f9e","relevance":113,"resulttype":["Journal/newspaper article"],"doi":"https://dx.doi.org/10.1016/j.jmrt.2020.10.054","cluster_labels":"Additive manufacturing, Calcium soda, Glass Ceramics","x":129.41376462733248,"y":-38.75727326181964,"area_uri":5,"area":"Additive manufacturing, Calcium soda, Glass Ceramics","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"105d3c6168ff9c861167d3bf7d23998b6f4736766e45abeef5a5e12dbbf98f9e","authors_list":["Jing Li","Zhenhua Hao","Yongchun Shu","Jilin He"],"authors_string":"Jing Li, Zhenhua Hao, Yongchun Shu, Jilin He","oa":true,"free_access":false,"oa_link":"http://dx.doi.org/10.1016/j.jmrt.2020.10.054","outlink":"http://dx.doi.org/10.1016/j.jmrt.2020.10.054","list_link":{"address":"https://dx.doi.org/10.1016/j.jmrt.2020.10.054","isDoi":true},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"not available","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":129.41376462733248,"zoomedY":-38.75727326181964,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"115a4799c17b8ef4e5ffde14e8bc63588c6ab32e4fc68d0b2c2903df137197ab","relation":"Acevedo, A. Calidad del Agua para Consumo Humano en el municipio de Trubaco. Colombia, Bolívar, 2006 Aguilar, O y Navarro, B. Evaluación de la calidad de agua para consumo humano de la comunidad de Llañucancha del distrito de Abancay (tesis). UTLA, Abancay, 2018 Álvarez, A. Salud pública y medicina preventiva. México, En manual del libro, 1991. Aurazo, G. La Contaminación en el centro del país. Tambo – Huancayo, 2004. Camacho, A. Método para la determinación de bacterias coliformes, coliformes fecales y Escherichia Coli por la Técnica de dilución en tubo múltiple. México, 2009 Campoverde, J. Análisis del efecto toxicológico que provoca el consumo humano de agua no potable, mediante la determinación de cloro libre residual en aguas tratadas de las parroquias rurales del cantón Cuenca (tesis). Universidad estatal de Cuenca. Ecuador, 2015 Cava, T. Caracterización físico – química y microbiológica de agua para consumo humano de la localidad Las Juntas del distrito Pacora – Lambayeque (tesis). Perú: UNPRG, 2016 Chemical Company, N. &.Manual del Agua su Naturaleza, Tratamiento y Aplicaciones. México: McGraw-Hill/Interamericana, 2005. Comisión Económica para América Latina y El Caribe (CEPAL). Financiamiento e inversión para el desarrollo sostenible en América Latina y el Caribe: perspectivas regionales para instrumentar el Consenso de Monterrey y el Plan de Implementación de Johannesburgo. Santiago de Chile, Chile, 2002 Contreras, L. Contaminación de Aguas Superficiales por Residuos de Plaguicida en Venezuela y oros países de Latinoamérica. Venezuela, 2013. Crites, R. Tratamiento de Aguas Residuales en Pequeñas Poblaciones. Bogotá – Colombia, 2000. Daza, A. Talleres inductivos para mejorar el nivel de percepción y el nivel de conocimiento en torno a la calidad del agua potable en el distrito de Nueva Cajamarca. (tesis). UNSM, 2017”, DIGESA. Dirección General de Salud Ambiental. En Decreto Supremo N° 031-2010 (pág. 10). Lima – Perú, 2010 Dirección General de Salud Ambiental. Reglamento de la Calidad del Agua para Consumo Humano. Lima – Perú, 2010 Fawell & Nieuwenhuijsen. Evaluación bacteriológica de agua potable suministrada dentro de las escuelas del gobierno del distrito Patna. India, 2003 Flores, L. Contaminación Bacteriológica por Coliformes Totales, Coliformes Fecales, Escherichia Coli y Salmonella SP en Aguas Termales de alcance turístico de la región San Martín . San Martín, 2016. Galarraga, E. Algunos Aspectos Relacionados con microorganismo en agua potable. Revista Politécnica de Información Técnica Científica, 1984 Gil, E. Análisis Microbiológico y Químico de las Aguas y Técnicas de Muestreo, Facultad de Ciencias Biológicas. Universidad Nacional de Trujillo. Trujillo – Perú, 2010. Hernández, C. Detección de Salmonella y Coliformes Fecales en agua de uso agrícola para la producción de melón. México, 2008. Levine, A. &. Evaluación del agua para consumo humano. (tesis). UTEA. ABANCAY, 1998. Madigan, M. (2012). Biología de los microorganismos. Madrid - España: Pearson, 2012 Marco. Prueba de la conductividad eléctrica en la evaluación fisiológica de la calidad de zemillas zeyheria tuberculosa. brazil. 2014 Mendoza, M. Impacto de la tierra en la calidad del agua de la microcuenca rio Sábalos. Costa Rica: CATIE, 1996 Metcalf. Ingeniería de aguas residuales tratamiento vertido y reutilización. En Eddy Madrid - España: Mc Graw, 1995. Orellana, J. Características del Agua Potable. UTN – FRRO. Argentina, 2005 Organización Mundial de la Salud (OMS). Manual para el desarrollo planes de seguridad del agua: Metodología pormenorizada de gestión de riesgos para proveedores de agua de consumo. Ginebra – Suiza, 2009 Organización Panamericana de la Salud (OPS), Consideraciones sobre el programa medio ambiente y salud en el Istmo Centroamericano. San José, CR, 1993 Organización Mundial de la Salud. Guía para la Calidad del Agua Potable Organización Panamericana de la Salud. Guías para la Calidad del Agua Potable. Control de la Calidad del Agua Potable en Sistemas de Abastecimiento para Pequeñas Comunidades. Lima, 1998 Organización Panamericana de la Salud. Técnicas para la Construcción de Captaciones de Aguas Superficiales. Lima, 2004 Oviedo, A. Participación Ciudadana y Espacio Público. En Segovia y Dascal (2º ed.). Santiago de Chile: Ediciones SUR, 2002 Páez, L. Validación Secundaria del Método de Filtración por Membrana para la Detección de Coliformes Totales y Escherichia Coli en muestras de agua para consumo humano analizadas en el laboratorio de salud pública del Huila. Colombia, 2008. Ramírez, L. Aplicación de la educación ambiental para desarrollar una cultura sustentable del agua en el centro poblado Los Ángeles. Moyobamba. (tesis). UNSM, 2017 Reglamento de la Calidad del Agua para Consumo Humano (D.S.061-2010-SA) Rojas et al. La pequeña cuenca como abastecedora de agua. Santiago. República Dominicana, 2002 Romero. Equidad en el Acceso del Agua en la ciudad de Lima una mirada a partir del derecho humano al agua. Lima, 2010 Santos, J. Conocimiento en cuanto a la calidad del agua potable en tres sectores específicos de Montemorelos (tesis). UAM. México, 2015 Sawyer C & Mc Carty. Química para Ingeniería Ambiental. Colombia: Mc Graw Hill. 2001 Severiche & Gonzales. Evaluación para la determinación de sulfatos en aguas por métodos turbidiometrico modificado. Cartagena – Colombia, 2012 SUNASS. Resolución de Gerencia General N°037-2004. Vargas, L. Tratamiento de aguas de consumo humano. Lima.2008 Zarza, L. La guerra del agua, un futuro distópico no tan lejano. 2009; http://hdl.handle.net/11458/3789","identifier":"http://hdl.handle.net/11458/3789","title":"Participación comunitaria para mejorar la calidad del agua para consumo humano en asentamiento humano San Genaro, distrito de Chorrillos – Lima, 2019","paper_abstract":"En el presente trabajo de investigación, tuvo como objetivo determinar la influencia de la participación comunitaria en el mejoramiento de la calidad del agua para consumo humano en asentamiento humano San Genaro, para lo cual se analizaron los parámetros microbiológicos como son coliformes totales y termotolerantes y fisicoquímicos como son color, turbiedad, cloro residual y pH del agua antes de recibir el tratamiento que involucraba a participación comunitaria. Asimismo, se diseñó y aplicó una metodología apropiada para el tratamiento con hipoclorito de calcio al 70%. En la parte metodológica, se trabajó con un solo grupo bajo un diseño pre experimental con una muestra de 40 familias de las cuales se tomaron dos muestras de agua de un litro cada, las mismas que fueron llevadas al laboratorio para su análisis microbiológicos y físico químico de acuerdo a lo estipulado en el D.S. 031 – 2010. S.A. En cuanto a los resultados encontramos que antes del tratamiento en el domicilio el agua no era apta para el consumo humano dado que los parámetros microbiológicos, superaban los límites máximos permisibles. En el pos tratamiento no se logró que dichos parámetros se reduzcan a cero como lo establece la norma pero no se logró que dichos parámetros se reduzcan a cero como lo establece la norma pero se logró un avance significativo. En cuanto a los parámetros fisicoquímicos después del tratamiento todos se encontraron bajo los límites máximos permisibles. La metodología diseñada para capacitar en el uso adecuado y tratamiento del agua a nivel domiciliario, fue determinante para que los pobladores conozcan sobre el agua, y su tratamiento. ; This research aimed to determine the influence of community participation in the improvement of water quality for human consumption in the settlement “San Genaro”, to which the microbiological parameters of total coliforms, thermotolerants and physicochemicals such as color, turbidity, chlorine residual and pH of water were analyzed before applying the treatment that involves the community participation. It was also designed and applied an appropriate methodology of 70% calcium hypochlorite treatment. In the methodological part, it has been worked with a single group by the pre-experimCnta1 design with a sample of 40 families from those who two water of one liter each one were sampled, which were taken to the laboratory for the microbiological and physical- chemical analysis as it was stipulated in D.S. 031 — 2010. S.A. Regarding the results it was found that before the treatment in households the water was not suitable for human consumption since the microbiological parameters exceeded the maximum permissible limits. The post-treatment did not reduce these parameters to zero as it is set forth in the standard, but a significant progress was made. As for the physical- chemical parameters after the treatment all the parameters were found under the maximum permissible limits. The methodology which was designed to train people in the appropriately to a given use and treatment of water in the households was decisive for the settlers to know about water and its treatment. ; Tesis ; Apa","published_in":"Universidad Nacional de San Martín - Tarapoto ; Repositorio Digital UNSM - T","year":"2012","subject_orig":"agua potable; calidad; coliformes; tratamiento; ; Drinking water; quality; coliforms; treatment","subject":"agua potable; calidad; coliformes; tratamiento; ; Drinking water; quality; coliforms; treatment","authors":"Pinedo Pérez, Ray Freddy","link":"http://hdl.handle.net/11458/3789","oa_state":"1","url":"115a4799c17b8ef4e5ffde14e8bc63588c6ab32e4fc68d0b2c2903df137197ab","relevance":41,"resulttype":["Thesis: bachelor"],"doi":"","cluster_labels":"Calcio por","x":-738.9105040968409,"y":-83.38616017384305,"area_uri":14,"area":"Calcio por","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"115a4799c17b8ef4e5ffde14e8bc63588c6ab32e4fc68d0b2c2903df137197ab","authors_list":["Ray Freddy Pinedo Pérez"],"authors_string":"Ray Freddy Pinedo Pérez","oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/11458/3789","outlink":"http://hdl.handle.net/11458/3789","list_link":{"address":"http://hdl.handle.net/11458/3789","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"agua potable; calidad; coliformes; tratamiento; ; Drinking water; quality; coliforms; treatment","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-738.9105040968409,"zoomedY":-83.38616017384305,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"173c2872c0fec35d6d776d2d5d630c9791137c2fe35c19ef0a69294004752b3a","relation":"","identifier":"http://dx.doi.org/10.1016/j.jcrc.2020.05.005; https://api.elsevier.com/content/article/PII:S088394412030561X?httpAccept=text/xml; https://api.elsevier.com/content/article/PII:S088394412030561X?httpAccept=text/plain","title":"Determinants of Total/ionized Calcium in patients undergoing citrate CVVH: A retrospective observational study","paper_abstract":"No abstract available","published_in":"Journal of Critical Care ; volume 59, page 16-22 ; ISSN 0883-9441","year":"2013","subject_orig":"Critical Care and Intensive Care Medicine","subject":"Critical Care and Intensive Care Medicine","authors":"Boer, Willem; van Tornout, Mathias; Solmi, Francesca; Willaert, Xavier; Schetz, Miet; Oudemans-van Straaten, Heleen","link":"http://dx.doi.org/10.1016/j.jcrc.2020.05.005","oa_state":"2","url":"173c2872c0fec35d6d776d2d5d630c9791137c2fe35c19ef0a69294004752b3a","relevance":63,"resulttype":["Journal/newspaper article"],"doi":"https://dx.doi.org/10.1016/j.jcrc.2020.05.005","cluster_labels":"Cardiology and Cardiovascular medicine, Anesthesiology and Pain medicine, Biomedical engineering","x":113.52177685316846,"y":358.1048400696528,"area_uri":6,"area":"Cardiology and Cardiovascular medicine, Anesthesiology and Pain medicine, Biomedical engineering","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"173c2872c0fec35d6d776d2d5d630c9791137c2fe35c19ef0a69294004752b3a","authors_list":["Willem Boer","Mathias van Tornout","Francesca Solmi","Xavier Willaert","Miet Schetz","Heleen Oudemans-van Straaten"],"authors_string":"Willem Boer, Mathias van Tornout, Francesca Solmi, Xavier Willaert, Miet Schetz, Heleen Oudemans-van Straaten","oa":false,"free_access":false,"oa_link":"http://dx.doi.org/10.1016/j.jcrc.2020.05.005","outlink":"http://dx.doi.org/10.1016/j.jcrc.2020.05.005","list_link":{"address":"https://dx.doi.org/10.1016/j.jcrc.2020.05.005","isDoi":true},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Critical Care and Intensive Care Medicine","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":113.52177685316846,"zoomedY":358.1048400696528,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"18aa40d6effaf4a9d7e2a90c08bb839f913a0c2f61f0d6305490c13fff550864","relation":"http://repository.ust.hk/ir/Record/1783.1-105762; Journal of Infection in Developing Countries, v. 14, (8), August 2020, p. 908-917; 2036-6590; https://doi.org/10.3855/jidc.12341; http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=2036-6590&rft.volume=v. 14&rft.issue=(8)&rft.date=2020&rft.spage=908&rft.aulast=He&rft.aufirst=W.&rft.atitle=Hypocalcemia+in+sepsis%3A+Analysis+of+the+subcellular+distribution+of+Ca2%2B+in+septic+rats+and+LPS%2FTNF-%CE%B1-treated+HUVECs&rft.title=Journal+of+Infection+in+Developing+Countries; http://www.scopus.com/record/display.url?eid=2-s2.0-85090819023&origin=inward; http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000571485000016","identifier":"http://repository.ust.hk/ir/Record/1783.1-105762; https://doi.org/10.3855/jidc.12341; http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=2036-6590&rft.volume=v. 14&rft.issue=(8)&rft.date=2020&rft.spage=908&rft.aulast=He&rft.aufirst=W.&rft.atitle=Hypocalcemia+in+sepsis%3A+Analysis+of+the+subcellular+distribution+of+Ca2%2B+in+septic+rats+and+LPS%2FTNF-%CE%B1-treated+HUVECs&rft.title=Journal+of+Infection+in+Developing+Countries; http://www.scopus.com/record/display.url?eid=2-s2.0-85090819023&origin=inward; http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000571485000016","title":"Hypocalcemia in sepsis: Analysis of the subcellular distribution of Ca 2+ in septic rats and LPS/TNF-α-treated HUVECs","paper_abstract":"Introduction: Hypocalcemia has been widely recognized in sepsis patients. However, the cause of hypocalcemia in sepsis is still not clear, and little is known about the subcellular distribution of Ca2+ in tissues during sepsis. Methodology: We measured the dynamic change in Ca2+ levels in body fluid and subcellular compartments, including the cytosol, endoplasmic reticulum and mitochondria, in major organs of cecal ligation and puncture (CLP)-operated rats, as well as the subcellular Ca2+ flux in HUVECs which treated by endotoxin and cytokines. Results: In the model of CLP-induced sepsis, the blood and urinary Ca2+ concentrations decreased rapidly, while the Ca2+ concentration in ascites fluid increased. The Ca2+ concentrations in the cytosol, ER, and mitochondria were elevated nearly synchronously in major organs in our sepsis model. Moreover, the calcium overload in CLP-operated rats treated with calcium supplementation was more severe than that in the non-calcium-supplemented rats but was alleviated by treatment with the calcium channel blocker verapamil. Similar subcellular Ca2+ flux was found in vitro in HUVECs and was triggered by lipopolysaccharide (LPS)/TNF-α. Conclusions: Ca2+ influx from the blood into the intercellular space and Ca2+ release into ascites fluid may cause hypocalcemia in sepsis and that this process may be due to the synergistic effect of endotoxin and cytokines. Copyright © 2020 He et al.","published_in":"","year":"2014","subject_orig":"Calcium overload; Hypocalcemia; Mechanism; Sepsis; Subcellular redistribution","subject":"Calcium overload; Hypocalcemia; Mechanism; Sepsis; Subcellular redistribution","authors":"He, Wencheng; Huang, Lei; Luo, Hua; Zang, Yang; An, Youzhong; Zhang, Weixing","link":"http://repository.ust.hk/ir/Record/1783.1-105762","oa_state":"2","url":"18aa40d6effaf4a9d7e2a90c08bb839f913a0c2f61f0d6305490c13fff550864","relevance":44,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-289.08592214893275,"y":474.95500137890565,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"18aa40d6effaf4a9d7e2a90c08bb839f913a0c2f61f0d6305490c13fff550864","authors_list":["Wencheng He","Lei Huang","Hua Luo","Yang Zang","Youzhong An","Weixing Zhang"],"authors_string":"Wencheng He, Lei Huang, Hua Luo, Yang Zang, Youzhong An, Weixing Zhang","oa":false,"free_access":false,"oa_link":"http://repository.ust.hk/ir/Record/1783.1-105762","outlink":"http://repository.ust.hk/ir/Record/1783.1-105762","list_link":{"address":"http://repository.ust.hk/ir/Record/1783.1-105762","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Calcium overload; Hypocalcemia; Mechanism; Sepsis; Subcellular redistribution","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-289.08592214893275,"zoomedY":474.95500137890565,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"18b910ac555e6516759bcb401c9b8bcecf61710b27475b59d2c283850dae4b0b","relation":"","identifier":"http://dx.doi.org/10.1016/j.bbadis.2020.165682; https://api.elsevier.com/content/article/PII:S0925443920300211?httpAccept=text/xml; https://api.elsevier.com/content/article/PII:S0925443920300211?httpAccept=text/plain","title":"Disturbance of bioenergetics and calcium homeostasis provoked by metabolites accumulating in propionic acidemia in heart mitochondria of developing rats","paper_abstract":"No abstract available","published_in":"Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease ; volume 1866, issue 5, page 165682 ; ISSN 0925-4439","year":"2014","subject_orig":"Molecular Medicine; Molecular Biology","subject":"Molecular Medicine; Molecular Biology","authors":"Roginski, Ana Cristina; Wajner, Alessandro; Cecatto, Cristiane; Wajner, Simone Magagnin; Castilho, Roger Frigério; Wajner, Moacir; Amaral, Alexandre Umpierrez","link":"http://dx.doi.org/10.1016/j.bbadis.2020.165682","oa_state":"2","url":"18b910ac555e6516759bcb401c9b8bcecf61710b27475b59d2c283850dae4b0b","relevance":85,"resulttype":["Journal/newspaper article"],"doi":"https://dx.doi.org/10.1016/j.bbadis.2020.165682","cluster_labels":"Cardiology and Cardiovascular medicine, Anesthesiology and Pain medicine, Biomedical engineering","x":333.7840764552536,"y":412.915086704248,"area_uri":6,"area":"Cardiology and Cardiovascular medicine, Anesthesiology and Pain medicine, Biomedical engineering","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"18b910ac555e6516759bcb401c9b8bcecf61710b27475b59d2c283850dae4b0b","authors_list":["Ana Cristina Roginski","Alessandro Wajner","Cristiane Cecatto","Simone Magagnin Wajner","Roger Frigério Castilho","Moacir Wajner","Alexandre Umpierrez Amaral"],"authors_string":"Ana Cristina Roginski, Alessandro Wajner, Cristiane Cecatto, Simone Magagnin Wajner, Roger Frigério Castilho, Moacir Wajner, Alexandre Umpierrez Amaral","oa":false,"free_access":false,"oa_link":"http://dx.doi.org/10.1016/j.bbadis.2020.165682","outlink":"http://dx.doi.org/10.1016/j.bbadis.2020.165682","list_link":{"address":"https://dx.doi.org/10.1016/j.bbadis.2020.165682","isDoi":true},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Molecular Medicine; Molecular Biology","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":333.7840764552536,"zoomedY":412.915086704248,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"18cabd2db11b6c2f6108b9fb11d07ce9ec55f2b3037f6cac6e1ea00710728958","relation":"info:eu-repo/grantAgreement/RSF//18-13-00220; Electrochemical method for isolation of chitinous 3D scaffolds from cultivated Aplysina aerophoba marine demosponge and its biomimetic application / K. Nowacki, I. Stępniak, T. Machałowski, M. Wysokowski, et al. . — DOI 10.1007/s00339-020-03533-2 // Applied Physics A: Materials Science and Processing. — 2020. — Vol. 5. — Iss. 126. — 368.; 0947-8396; https://link.springer.com/content/pdf/10.1007/s00339-020-03533-2.pdf; 1; 38868361-3cfe-459c-a6e6-38487816c83a; http://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85083983339; http://hdl.handle.net/10995/90559; https://elar.urfu.ru/handle/10995/90559; doi:10.1007/s00339-020-03533-2; 85083983339; 000530377600001","identifier":"https://elar.urfu.ru/handle/10995/90559; https://link.springer.com/content/pdf/10.1007/s00339-020-03533-2.pdf; http://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85083983339; http://hdl.handle.net/10995/90559; https://doi.org/10.1007/s00339-020-03533-2","title":"Electrochemical method for isolation of chitinous 3D scaffolds from cultivated Aplysina aerophoba marine demosponge and its biomimetic application","paper_abstract":"Three-dimensional (3D) biopolymer-based scaffolds including chitinous matrices have been widely used for tissue engineering, regenerative medicine and other modern interdisciplinary fields including extreme biomimetics. In this study, we introduce a novel, electrochemically assisted method for 3D chitin scaffolds isolation from the cultivated marine demosponge Aplysina aerophoba which consists of three main steps: (1) decellularization, (2) decalcification and (3) main deproteinization along with desilicification and depigmentation. For the first time, the obtained electrochemically isolated 3D chitinous scaffolds have been further biomineralized ex vivo using hemolymph of Cornu aspersum edible snail aimed to generate calcium carbonates-based layered biomimetic scaffolds. The analysis of prior to, during and post-electrochemical isolation samples as well as samples treated with molluscan hemolymph was conducted employing analytical techniques such as SEM, XRD, ATR–FTIR and Raman spectroscopy. Finally, the use of described method for chitin isolation combined with biomineralization ex vivo resulted in the formation of crystalline (calcite) calcium carbonate-based deposits on the surface of chitinous scaffolds, which could serve as promising biomaterials for the wide range of biomedical, environmental and biomimetic applications. © 2020, The Author(s). ; Politechnika PoznaÅ ska, PUT: 0911/SBAD/0380/2019 ; Deutsche Forschungsgemeinschaft, DFG: HE 394/3 ; Deutscher Akademischer Austauschdienst, DAAD ; Russian Science Foundation, RSF: 18-13-00220 ; PPN/BEK/2018/1/00071 ; 03/32/SBAD/0906 ; Sächsisches Staatsministerium für Wissenschaft und Kunst, SMWK: 02010311 ; This work was performed with the financial support of Poznan University of Technology, Poland (Grant No. 0911/SBAD/0380/2019), as well as by the Ministry of Science and Higher Education (Poland) as financial subsidy to PUT No. 03/32/SBAD/0906. Krzysztof Nowacki was supported by the Erasmus Plus program (2019). Also, this study was partially supported by the DFG Project HE 394/3 and SMWK Project No. 02010311 (Germany). Marcin Wysokowski is financially supported by the Polish National Agency for Academic Exchange (PPN/BEK/2018/1/00071). Tomasz Machałowski is supported by DAAD (Personal Ref. No. 91734605). Yuliya Khrunyk is supported by the Russian Science Foundation (Grant No. 18-13-00220).","published_in":"Applied Physics A: Materials Science and Processing","year":"2014","subject_orig":"APLYSINA AEROPHOBA; BIOMIMETICS; BIOMINERALIZATION; CHITIN; ELECTROLYSIS; HEMOLYMPH; MARINE SPONGES; SCAFFOLDS; BIOMIMETIC PROCESSES; BIOPOLYMERS; BLOOD; CALCITE; CALCIUM CARBONATE; FOURIER TRANSFORM INFRARED SPECTROSCOPY; BIOMIMETIC SCAFFOLDS; DECELLULARIZATION; DEPROTEINIZATION; DESILICIFICATION; ELECTROCHEMICAL METHODS; INTERDISCIPLINARY FIELDS; THREEDIMENSIONAL (3-D); SCAFFOLDS (BIOLOGY)","subject":"APLYSINA AEROPHOBA; BIOMIMETICS; BIOMINERALIZATION; CHITIN; ELECTROLYSIS; HEMOLYMPH; MARINE SPONGES; SCAFFOLDS; BIOMIMETIC PROCESSES; BIOPOLYMERS; BLOOD; CALCITE; CALCIUM CARBONATE; FOURIER TRANSFORM INFRARED SPECTROSCOPY; BIOMIMETIC SCAFFOLDS; DECELLULARIZATION; DEPROTEINIZATION; DESILICIFICATION; ELECTROCHEMICAL METHODS; INTERDISCIPLINARY FIELDS; THREEDIMENSIONAL (3-D); SCAFFOLDS (BIOLOGY)","authors":"Nowacki, K.; Stępniak, I.; Machałowski, T.; Wysokowski, M.; Petrenko, I.; Schimpf, C.; Rafaja, D.; Langer, E.; Richter, A.; Ziętek, J.; Pantović, S.; Voronkina, A.; Kovalchuk, V.; Ivanenko, V.; Khrunyk, Y.; Galli, R.; Joseph, Y.; Gelinsky, M.; Jesionowski, T.; Ehrlich, H.","link":"https://elar.urfu.ru/handle/10995/90559","oa_state":"1","url":"18cabd2db11b6c2f6108b9fb11d07ce9ec55f2b3037f6cac6e1ea00710728958","relevance":119,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-378.56966126291104,"y":-256.2991357415894,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"18cabd2db11b6c2f6108b9fb11d07ce9ec55f2b3037f6cac6e1ea00710728958","authors_list":["K. 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River incision models, such as the stream power model, are often used to quantify the relationship between topography and rock motion in the context of landscapes at steady state. At steady state, the stream power model predicts higher denudation rates for steeper river channels, while accounting for only the vertical motion of rock due to rock uplift or denudation. However, natural landscapes often have more complicated histories, particularly in convergent orogens with asymmetric topography, where steady state requires that denudation must balance both vertical and horizontal rock motion. This thesis addresses this central issue by comparing the spatial and temporal pattern of denudation with metrics of topographic steepness in the Northern Apennine Mountains of Italy, a young and active orogen with asymmetric topography. New and existing catchment-averaged denudation rates from cosmogenic 10Be concentrations demonstrate that the steeper flank of the Northern Apennines is eroding more slowly than the gentler flank. Long-term denudation rates inverted from low-temperature thermochronometers show that this pattern of denudation across the orogen is long-lived, since at the least 3—5 Ma, and that denudation rates have decreased on the Ligurian side through time. The apparent decoupling between denudation rates and topography is resolved with a kinematic model of the orogenic wedge that accounts for the full vertical and horizontal rock velocity field. This model reconciles the 10Be concentrations, geomorphic observations, and geodetic rates of rock motion with the topography of the Northern Apennines, and provides new estimates for slab retreat rates consistent with recent estimates from tomography, surface geology, and morphology. This thesis also explores the partitioning of denudation into physical erosion and chemical weathering in the Northern Apennines. Chemical weathering in particular is an important control on landscape evolution and the global CO2 budget. Most studies have focused on weathering in orogens comprised of silicate-rich lithologies, which can remove CO2 from the atmosphere over geologic timescales, whereas carbonate weathering is generally considered to be CO2 neutral. However, even in silicate-rich landscapes, carbonate weathering dominates total solute fluxes. Recently uplifted orogens in particular are often characterized by carbonate-rich, marine sedimentary sequences, so the global weathering flux of carbon and calcium to the oceans should be more strongly influenced by these orogens. However, the partitioning of denudation fluxes remains largely unexplored in mixed lithology orogens, so, it is unclear whether the same processes that control erosion and weathering apply to both silicate-rich and mixed lithology settings. Here, denudation fluxes from the Northern Apennines are partitioned into carbonate and silicate chemical weathering and physical erosion fluxes. These fluxes demonstrate that denudation is dominated by physical erosion of both silicate and carbonate rocks; carbonate physical erosion is controlled by lithology; weathering fluxes are dominated by carbonate dissolution; and denudation is negatively correlated with runoff. Finally, denudation fluxes from the Northern Apennines are similar to other temperature mountain ranges (e.g. Southern Alps of New Zealand), although total weathering fluxes from this study are generally higher, due to greater carbonate weathering fluxes. The results from this thesis challenge current interpretations regarding denudation rates through space and time and contribute to a broader understanding of surface and crustal processes in the Northern Apennines.","published_in":"","year":"2020","subject_orig":"info:eu-repo/classification/ddc/550; Earth sciences","subject":"classification; Earth sciences","authors":"Erlanger, Erica","link":"http://hdl.handle.net/20.500.11850/393261","oa_state":"1","url":"0c57f833611c8bad0e4cdb5d68d592315ba3b85ef437932a5ff2db21790c934b","relevance":47,"resulttype":["Thesis: doctoral and postdoctoral"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-407.6043812452111,"y":-517.330375719018,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"0c57f833611c8bad0e4cdb5d68d592315ba3b85ef437932a5ff2db21790c934b","authors_list":["Erica Erlanger"],"authors_string":"Erica Erlanger","oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/20.500.11850/393261","outlink":"http://hdl.handle.net/20.500.11850/393261","list_link":{"address":"http://hdl.handle.net/20.500.11850/393261","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"info:eu-repo/classification/ddc/550; Earth sciences","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-407.6043812452111,"zoomedY":-517.330375719018,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"18aa40d6effaf4a9d7e2a90c08bb839f913a0c2f61f0d6305490c13fff550864","relation":"http://repository.ust.hk/ir/Record/1783.1-105762; Journal of Infection in Developing Countries, v. 14, (8), August 2020, p. 908-917; 2036-6590; https://doi.org/10.3855/jidc.12341; http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=2036-6590&rft.volume=v. 14&rft.issue=(8)&rft.date=2020&rft.spage=908&rft.aulast=He&rft.aufirst=W.&rft.atitle=Hypocalcemia+in+sepsis%3A+Analysis+of+the+subcellular+distribution+of+Ca2%2B+in+septic+rats+and+LPS%2FTNF-%CE%B1-treated+HUVECs&rft.title=Journal+of+Infection+in+Developing+Countries; http://www.scopus.com/record/display.url?eid=2-s2.0-85090819023&origin=inward; http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000571485000016","identifier":"http://repository.ust.hk/ir/Record/1783.1-105762; https://doi.org/10.3855/jidc.12341; http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=2036-6590&rft.volume=v. 14&rft.issue=(8)&rft.date=2020&rft.spage=908&rft.aulast=He&rft.aufirst=W.&rft.atitle=Hypocalcemia+in+sepsis%3A+Analysis+of+the+subcellular+distribution+of+Ca2%2B+in+septic+rats+and+LPS%2FTNF-%CE%B1-treated+HUVECs&rft.title=Journal+of+Infection+in+Developing+Countries; http://www.scopus.com/record/display.url?eid=2-s2.0-85090819023&origin=inward; http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000571485000016","title":"Hypocalcemia in sepsis: Analysis of the subcellular distribution of Ca 2+ in septic rats and LPS/TNF-α-treated HUVECs","paper_abstract":"Introduction: Hypocalcemia has been widely recognized in sepsis patients. However, the cause of hypocalcemia in sepsis is still not clear, and little is known about the subcellular distribution of Ca2+ in tissues during sepsis. Methodology: We measured the dynamic change in Ca2+ levels in body fluid and subcellular compartments, including the cytosol, endoplasmic reticulum and mitochondria, in major organs of cecal ligation and puncture (CLP)-operated rats, as well as the subcellular Ca2+ flux in HUVECs which treated by endotoxin and cytokines. Results: In the model of CLP-induced sepsis, the blood and urinary Ca2+ concentrations decreased rapidly, while the Ca2+ concentration in ascites fluid increased. The Ca2+ concentrations in the cytosol, ER, and mitochondria were elevated nearly synchronously in major organs in our sepsis model. Moreover, the calcium overload in CLP-operated rats treated with calcium supplementation was more severe than that in the non-calcium-supplemented rats but was alleviated by treatment with the calcium channel blocker verapamil. Similar subcellular Ca2+ flux was found in vitro in HUVECs and was triggered by lipopolysaccharide (LPS)/TNF-α. Conclusions: Ca2+ influx from the blood into the intercellular space and Ca2+ release into ascites fluid may cause hypocalcemia in sepsis and that this process may be due to the synergistic effect of endotoxin and cytokines. Copyright © 2020 He et al.","published_in":"","year":"2020","subject_orig":"Calcium overload; Hypocalcemia; Mechanism; Sepsis; Subcellular redistribution","subject":"Calcium overload; Hypocalcemia; Mechanism; Sepsis; Subcellular redistribution","authors":"He, Wencheng; Huang, Lei; Luo, Hua; Zang, Yang; An, Youzhong; Zhang, Weixing","link":"http://repository.ust.hk/ir/Record/1783.1-105762","oa_state":"2","url":"18aa40d6effaf4a9d7e2a90c08bb839f913a0c2f61f0d6305490c13fff550864","relevance":44,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-289.08592214893275,"y":474.95500137890565,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"18aa40d6effaf4a9d7e2a90c08bb839f913a0c2f61f0d6305490c13fff550864","authors_list":["Wencheng He","Lei Huang","Hua Luo","Yang Zang","Youzhong An","Weixing Zhang"],"authors_string":"Wencheng He, Lei Huang, Hua Luo, Yang Zang, Youzhong An, Weixing Zhang","oa":false,"free_access":false,"oa_link":"http://repository.ust.hk/ir/Record/1783.1-105762","outlink":"http://repository.ust.hk/ir/Record/1783.1-105762","list_link":{"address":"http://repository.ust.hk/ir/Record/1783.1-105762","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Calcium overload; Hypocalcemia; Mechanism; Sepsis; Subcellular redistribution","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-289.08592214893275,"zoomedY":474.95500137890565,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"18cabd2db11b6c2f6108b9fb11d07ce9ec55f2b3037f6cac6e1ea00710728958","relation":"info:eu-repo/grantAgreement/RSF//18-13-00220; Electrochemical method for isolation of chitinous 3D scaffolds from cultivated Aplysina aerophoba marine demosponge and its biomimetic application / K. Nowacki, I. Stępniak, T. Machałowski, M. Wysokowski, et al. . — DOI 10.1007/s00339-020-03533-2 // Applied Physics A: Materials Science and Processing. — 2020. — Vol. 5. — Iss. 126. — 368.; 0947-8396; https://link.springer.com/content/pdf/10.1007/s00339-020-03533-2.pdf; 1; 38868361-3cfe-459c-a6e6-38487816c83a; http://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85083983339; http://hdl.handle.net/10995/90559; https://elar.urfu.ru/handle/10995/90559; doi:10.1007/s00339-020-03533-2; 85083983339; 000530377600001","identifier":"https://elar.urfu.ru/handle/10995/90559; https://link.springer.com/content/pdf/10.1007/s00339-020-03533-2.pdf; http://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85083983339; http://hdl.handle.net/10995/90559; https://doi.org/10.1007/s00339-020-03533-2","title":"Electrochemical method for isolation of chitinous 3D scaffolds from cultivated Aplysina aerophoba marine demosponge and its biomimetic application","paper_abstract":"Three-dimensional (3D) biopolymer-based scaffolds including chitinous matrices have been widely used for tissue engineering, regenerative medicine and other modern interdisciplinary fields including extreme biomimetics. In this study, we introduce a novel, electrochemically assisted method for 3D chitin scaffolds isolation from the cultivated marine demosponge Aplysina aerophoba which consists of three main steps: (1) decellularization, (2) decalcification and (3) main deproteinization along with desilicification and depigmentation. For the first time, the obtained electrochemically isolated 3D chitinous scaffolds have been further biomineralized ex vivo using hemolymph of Cornu aspersum edible snail aimed to generate calcium carbonates-based layered biomimetic scaffolds. The analysis of prior to, during and post-electrochemical isolation samples as well as samples treated with molluscan hemolymph was conducted employing analytical techniques such as SEM, XRD, ATR–FTIR and Raman spectroscopy. Finally, the use of described method for chitin isolation combined with biomineralization ex vivo resulted in the formation of crystalline (calcite) calcium carbonate-based deposits on the surface of chitinous scaffolds, which could serve as promising biomaterials for the wide range of biomedical, environmental and biomimetic applications. © 2020, The Author(s). ; Politechnika PoznaÅ ska, PUT: 0911/SBAD/0380/2019 ; Deutsche Forschungsgemeinschaft, DFG: HE 394/3 ; Deutscher Akademischer Austauschdienst, DAAD ; Russian Science Foundation, RSF: 18-13-00220 ; PPN/BEK/2018/1/00071 ; 03/32/SBAD/0906 ; Sächsisches Staatsministerium für Wissenschaft und Kunst, SMWK: 02010311 ; This work was performed with the financial support of Poznan University of Technology, Poland (Grant No. 0911/SBAD/0380/2019), as well as by the Ministry of Science and Higher Education (Poland) as financial subsidy to PUT No. 03/32/SBAD/0906. Krzysztof Nowacki was supported by the Erasmus Plus program (2019). Also, this study was partially supported by the DFG Project HE 394/3 and SMWK Project No. 02010311 (Germany). Marcin Wysokowski is financially supported by the Polish National Agency for Academic Exchange (PPN/BEK/2018/1/00071). Tomasz Machałowski is supported by DAAD (Personal Ref. No. 91734605). Yuliya Khrunyk is supported by the Russian Science Foundation (Grant No. 18-13-00220).","published_in":"Applied Physics A: Materials Science and Processing","year":"2020","subject_orig":"APLYSINA AEROPHOBA; BIOMIMETICS; BIOMINERALIZATION; CHITIN; ELECTROLYSIS; HEMOLYMPH; MARINE SPONGES; SCAFFOLDS; BIOMIMETIC PROCESSES; BIOPOLYMERS; BLOOD; CALCITE; CALCIUM CARBONATE; FOURIER TRANSFORM INFRARED SPECTROSCOPY; BIOMIMETIC SCAFFOLDS; DECELLULARIZATION; DEPROTEINIZATION; DESILICIFICATION; ELECTROCHEMICAL METHODS; INTERDISCIPLINARY FIELDS; THREEDIMENSIONAL (3-D); SCAFFOLDS (BIOLOGY)","subject":"APLYSINA AEROPHOBA; BIOMIMETICS; BIOMINERALIZATION; CHITIN; ELECTROLYSIS; HEMOLYMPH; MARINE SPONGES; SCAFFOLDS; BIOMIMETIC PROCESSES; BIOPOLYMERS; BLOOD; CALCITE; CALCIUM CARBONATE; FOURIER TRANSFORM INFRARED SPECTROSCOPY; BIOMIMETIC SCAFFOLDS; DECELLULARIZATION; DEPROTEINIZATION; DESILICIFICATION; ELECTROCHEMICAL METHODS; INTERDISCIPLINARY FIELDS; THREEDIMENSIONAL (3-D); SCAFFOLDS (BIOLOGY)","authors":"Nowacki, K.; Stępniak, I.; Machałowski, T.; Wysokowski, M.; Petrenko, I.; Schimpf, C.; Rafaja, D.; Langer, E.; Richter, A.; Ziętek, J.; Pantović, S.; Voronkina, A.; Kovalchuk, V.; Ivanenko, V.; Khrunyk, Y.; Galli, R.; Joseph, Y.; Gelinsky, M.; Jesionowski, T.; Ehrlich, H.","link":"https://elar.urfu.ru/handle/10995/90559","oa_state":"1","url":"18cabd2db11b6c2f6108b9fb11d07ce9ec55f2b3037f6cac6e1ea00710728958","relevance":119,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-378.56966126291104,"y":-256.2991357415894,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"18cabd2db11b6c2f6108b9fb11d07ce9ec55f2b3037f6cac6e1ea00710728958","authors_list":["K. Nowacki","I. Stępniak","T. Machałowski","M. Wysokowski","I. Petrenko","C. Schimpf","D. Rafaja","E. Langer","A. Richter","J. Ziętek","S. Pantović","A. Voronkina","V. Kovalchuk","V. Ivanenko","Y. Khrunyk","R. Galli","Y. Joseph","M. Gelinsky","T. Jesionowski","H. Ehrlich"],"authors_string":"K. Nowacki, I. Stępniak, T. Machałowski, M. Wysokowski, I. Petrenko, C. Schimpf, D. Rafaja, E. Langer, A. Richter, J. Ziętek, S. Pantović, A. Voronkina, V. Kovalchuk, V. Ivanenko, Y. Khrunyk, R. Galli, Y. Joseph, M. Gelinsky, T. Jesionowski, H. Ehrlich","oa":true,"free_access":false,"oa_link":"https://elar.urfu.ru/handle/10995/90559","outlink":"https://elar.urfu.ru/handle/10995/90559","list_link":{"address":"https://elar.urfu.ru/handle/10995/90559","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"APLYSINA AEROPHOBA; BIOMIMETICS; BIOMINERALIZATION; CHITIN; ELECTROLYSIS; HEMOLYMPH; MARINE SPONGES; SCAFFOLDS; BIOMIMETIC PROCESSES; BIOPOLYMERS; BLOOD; CALCITE; CALCIUM CARBONATE; FOURIER TRANSFORM INFRARED SPECTROSCOPY; BIOMIMETIC SCAFFOLDS; DECELLULARIZATION; DEPROTEINIZATION; DESILICIFICATION; ELECTROCHEMICAL METHODS; INTERDISCIPLINARY FIELDS; THREEDIMENSIONAL (3-D); SCAFFOLDS (BIOLOGY)","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-378.56966126291104,"zoomedY":-256.2991357415894,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"32ced0dd5cb6e4b4601673040f485507da59f350bff0e719508474e304e567e5","relation":"International Journal of Biological Macromolecules; Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı; https://hdl.handle.net/20.500.12451/7130; 148; -","identifier":"https://hdl.handle.net/20.500.12451/7130","title":"Hibiscus Rosasinensis L. aqueous extract-assisted valorization of lignin: Preparation of magnetically reusable Pd NPs@Fe3O4-lignin for Cr(VI) reduction and Suzuki-Miyaura reaction in eco-friendly media","paper_abstract":"Baran, Talat ( Aksaray, Yazar ) ; Hibiscus Rosasinensis L. extract mediated biosynthesis of Pd nanoparticles (NPs) and their deposition on the magnetic calcium lignosulfonate (MCaLig), as a simple and eco-friendly process for the preparation of Pd NPs@Fe3O4-lignin, is reported. The Pd NPs@Fe3O4-lignin was characterized by TEM, XRD, EDS, FE-SEM, FT-IR, VSM, and UV–Vis. The magnetic NPs were employed as exceptional catalysts in the catalytic reduction of Cr(VI) and Suzuki-Miyaura reaction between PhB(OH)2 and substituted aryl halides in EtOH:H2O as well as under ligand free conditions in the presence of K2CO3 with satisfactory product yields. Regeneration of the Pd NPs@Fe3O4-lignin was carried out by a magnet after the preparation of biphenyls. Catalytic efficiency retention was achieved after seven cycles.","published_in":"","year":"2020","subject_orig":"Biowaste; Cr(VI) Reduction; Hibiscus; Rosasinensis L; Pd NPs@Fe3O4-lignin; Suzuki-Miyaura","subject":"Biowaste; Cr(VI) Reduction; Hibiscus; Rosasinensis L; Pd NPs@Fe3O4-lignin; Suzuki-Miyaura","authors":"Nasrollahzadeh, Mahmoud; Bidgoli, Nayyereh Sadat Soheili; Issaabadi, Zahra; Baran, Talat; Ghavamifar, Zahra; Luque, Rafael","link":"https://hdl.handle.net/20.500.12451/7130","oa_state":"0","url":"32ced0dd5cb6e4b4601673040f485507da59f350bff0e719508474e304e567e5","relevance":24,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-634.0834642603965,"y":-354.83310517303875,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"32ced0dd5cb6e4b4601673040f485507da59f350bff0e719508474e304e567e5","authors_list":["Mahmoud Nasrollahzadeh","Nayyereh Sadat Soheili Bidgoli","Zahra Issaabadi","Talat Baran","Zahra Ghavamifar","Rafael Luque"],"authors_string":"Mahmoud Nasrollahzadeh, Nayyereh Sadat Soheili Bidgoli, Zahra Issaabadi, Talat Baran, Zahra Ghavamifar, Rafael Luque","oa":false,"free_access":false,"oa_link":"https://hdl.handle.net/20.500.12451/7130","outlink":"https://hdl.handle.net/20.500.12451/7130","list_link":{"address":"https://hdl.handle.net/20.500.12451/7130","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Biowaste; Cr(VI) Reduction; Hibiscus; Rosasinensis L; Pd NPs@Fe3O4-lignin; Suzuki-Miyaura","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-634.0834642603965,"zoomedY":-354.83310517303875,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"6b185fe4deaa7084a3d253a04673c5457e921a487bce60deb14f80fd53ba6b53","relation":"Advanced Healthcare Materials; Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı; 2192-2640; 2192-2659; https://doi.org/10.1002/adhm.201901722; https://hdl.handle.net/20.500.12831/2962; doi:10.1002/adhm.201901722; 9; 10","identifier":"https://doi.org/10.1002/adhm.201901722; https://hdl.handle.net/20.500.12831/2962","title":"Engineering Tough, Injectable, Naturally Derived, Bioadhesive Composite Hydrogels","paper_abstract":"TUTAR, RUMEYSA/0000-0002-4743-424X; Khademhosseini, Ali/0000-0002-2692-1524 ; WOS:000527948500001 ; PubMed ID: 32329254 ; Engineering mechanically robust bioadhesive hydrogels that can withstand large strains may open new opportunities for the sutureless sealing of highly stretchable tissues. While typical chemical modifications of hydrogels, such as increasing the functional group density of crosslinkable moieties and blending them with other polymers or nanomaterials have resulted in improved mechanical stiffness, the modified hydrogels have often exhibited increased brittleness resulting in deteriorated sealing capabilities under large strains. Furthermore, highly elastic hydrogels, such as tropoelastin derivatives are highly expensive. Here, gelatin methacryloyl (GelMA) is hybridized with methacrylate-modified alginate (AlgMA) to enable ion-induced reversible crosslinking that can dissipate energy under strain. The hybrid hydrogels provide a photocrosslinkable, injectable, and bioadhesive platform with an excellent toughness that can be tailored using divalent cations, such as calcium. This class of hybrid biopolymers with more than 600% improved toughness compared to GelMA may set the stage for durable, mechanically resilient, and cost-effective tissue sealants. This strategy to increase the toughness of hydrogels may be extended to other crosslinkable polymers with similarly reactive moieties. ; Fonds de la recherche en sante du QuebecFonds de la Recherche en Sante du Quebec; Scientific and Technological Research Council of Turkey (TUBITAK) 2214-A International Doctorate Research Fellowship ProgramTurkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK) [1059B141700084]; Istanbul University Cerrahpasa, Engineering Faculty, Chemistry Department; National Institutes of HealthUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USA [1R01EB023052-01A1, 1R01HL140618-01]; Canadian Institutes of Health Research (CIHR)Canadian Institutes of Health Research (CIHR); Pennsylvania State University ; M.T. and A.S. contributed equally to this work. M.T. acknowledges financial support from Fonds de la recherche en sante du Quebec. R.T. would like to acknowledge the financial support from the Scientific and Technological Research Council of Turkey (TUBITAK) 2214-A International Doctorate Research Fellowship Program (App. No: 1059B141700084) and from Istanbul University Cerrahpasa, Engineering Faculty, Chemistry Department. A.K. would like to acknowledge funding from the National Institutes of Health (1R01EB023052-01A1, 1R01HL140618-01). A.S. would like to acknowledge the postdoctoral fellowship from the Canadian Institutes of Health Research (CIHR) and the startup fund from the Pennsylvania State University.","published_in":"","year":"2020","subject_orig":"alginate; anastomosis; bladder injury; gelatin methacryloyl; sutureless tissue sealing; tough hydrogels","subject":"alginate; anastomosis; bladder injury; gelatin methacryloyl; sutureless tissue sealing; tough hydrogels","authors":"Tavafoghi, Maryam; Sheikhi, Amir; Tutar, Rumeysa; Jahangiry, Jamileh; Baidya, Avijit; Haghniaz, Reihaneh; Khademhosseini, Ali","link":"https://doi.org/10.1002/adhm.201901722","oa_state":"0","url":"6b185fe4deaa7084a3d253a04673c5457e921a487bce60deb14f80fd53ba6b53","relevance":30,"resulttype":["Journal/newspaper article"],"doi":"https://doi.org/10.1002/adhm.201901722","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-9.440400178412874,"y":-628.4195971021305,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"6b185fe4deaa7084a3d253a04673c5457e921a487bce60deb14f80fd53ba6b53","authors_list":["Maryam Tavafoghi","Amir Sheikhi","Rumeysa Tutar","Jamileh Jahangiry","Avijit Baidya","Reihaneh Haghniaz","Ali Khademhosseini"],"authors_string":"Maryam Tavafoghi, Amir Sheikhi, Rumeysa Tutar, Jamileh Jahangiry, Avijit Baidya, Reihaneh Haghniaz, Ali Khademhosseini","oa":false,"free_access":false,"oa_link":"https://doi.org/10.1002/adhm.201901722","outlink":"https://doi.org/10.1002/adhm.201901722","list_link":{"address":"https://doi.org/10.1002/adhm.201901722","isDoi":true},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"alginate; anastomosis; bladder injury; gelatin methacryloyl; sutureless tissue sealing; tough hydrogels","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-9.440400178412874,"zoomedY":-628.4195971021305,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"701100000ba3d00d40d391332b0eb87626c87a71aa47a596866e43a7c738bcdd","relation":"MINECO/ICTI2013-2016/BFU2015-64487R; MINECO/ICTI2013-2016/MDM-2014-0435; Publisher's version; http://dx.doi.org/10.1107/S2052252519013848; Sí; IUCrJ 7(1): 18-29 (2020); http://hdl.handle.net/10261/241436; doi:10.1107/S2052252519013848; 2052-2525","identifier":"http://hdl.handle.net/10261/241436; https://doi.org/10.1107/S2052252519013848","title":"Structure-based mechanism of cysteine-switch latency and of catalysis by pappalysin-family metallopeptidases","paper_abstract":"Tannerella forsythia is an oral dysbiotic periodontopathogen involved in severe human periodontal disease. As part of its virulence factor armamentarium, at the site of colonization it secretes mirolysin, a metallopeptidase of the unicellular pappalysin family, as a zymogen that is proteolytically auto-activated extracellularly at the Ser54–Arg55 bond. Crystal structures of the catalytically impaired promirolysin point mutant E225A at 1.4 and 1.6 Å revealed that latency is exerted by an N-terminal 34-residue pro-segment that shields the front surface of the 274-residue catalytic domain, thus preventing substrate access. The catalytic domain conforms to the metzincin clan of metallopeptidases and contains a double calcium site, which acts as a calcium switch for activity. The pro-segment traverses the active-site cleft in the opposite direction to the substrate, which precludes its cleavage. It is anchored to the mature enzyme through residue Arg21, which intrudes into the specificity pocket in cleft sub-site S1′. Moreover, residue Cys23 within a conserved cysteine–glycine motif blocks the catalytic zinc ion by a cysteine-switch mechanism, first described for mammalian matrix metallopeptidases. In addition, a 1.5 Å structure was obtained for a complex of mature mirolysin and a tetradecapeptide, which filled the cleft from sub-site S1′ to S6′. A citrate molecule in S1 completed a product-complex mimic that unveiled the mechanism of substrate binding and cleavage by mirolysin, the catalytic domain of which was already preformed in the zymogen. These results, including a preference for cleavage before basic residues, are likely to be valid for other unicellular pappalysins derived from archaea, bacteria, cyanobacteria, algae and fungi, including archetypal ulilysin from Methanosarcina acetivorans. They may further apply, at least in part, to the multi-domain orthologues of higher organisms. ; This study was supported in part by grants from Spanish, Catalan, US American (NIH/NIDR) and Polish (NCN) public agencies (BFU2015-64487R; MDM-2014-0435; Fundacio´ ‘La Marato´ de TV3’ 201815 and 2017SGR3, 2015/17/B/NZ1/ 00666, 2016/21/B/NZ1/00292, and R21DE026280). MK was recipient of a scholarship from the Polish Ministry of Science and Higher Education (1306/MOB/IV/2015/0, ‘Mobilnoc´ Plus’). The Structural Biology Unit of IBMB was a ‘Marı´a de Maeztu’ Unit of Excellence of the Spanish Ministry of Science, Innovation and Universities (2015–2019).","published_in":"","year":"2020-01","subject_orig":"Pappalysin family; Metallopeptidases; Mirolysin; Peridontopathogens; Zymogens; Catalytic mechanisms","subject":"Pappalysin family; Metallopeptidases; Mirolysin; Peridontopathogens; Zymogens; Catalytic mechanisms","authors":"Guevara, Tibisay; Rodríguez-Banqueri, Arturo; Ksiazek, Miroslaw; Potempa, Jan; Gomis-Rüth, F. Xavier","link":"http://hdl.handle.net/10261/241436","oa_state":"1","url":"701100000ba3d00d40d391332b0eb87626c87a71aa47a596866e43a7c738bcdd","relevance":37,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-476.7072131568496,"y":-120.98768504783509,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"701100000ba3d00d40d391332b0eb87626c87a71aa47a596866e43a7c738bcdd","authors_list":["Tibisay Guevara","Arturo Rodríguez-Banqueri","Miroslaw Ksiazek","Jan Potempa","F. Xavier Gomis-Rüth"],"authors_string":"Tibisay Guevara, Arturo Rodríguez-Banqueri, Miroslaw Ksiazek, Jan Potempa, F. Xavier Gomis-Rüth","oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/10261/241436","outlink":"http://hdl.handle.net/10261/241436","list_link":{"address":"http://hdl.handle.net/10261/241436","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Pappalysin family; Metallopeptidases; Mirolysin; Peridontopathogens; Zymogens; Catalytic mechanisms","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-476.7072131568496,"zoomedY":-120.98768504783509,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"701bf8a4fb2e3efdf285b78505d9d8e747ef9e0e514c77560c07ce8a3fc83731","relation":"10.1177/0885328220933781; Journal of Biomaterials Applications; Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı; 08853282; https:/dx.doi.org/10.1177/0885328220933781; https://hdl.handle.net/20.500.12451/7662; 35; 3; 385; 404","identifier":"https://hdl.handle.net/20.500.12451/7662; https://doi.org/10.1177/0885328220933781","title":"In vitro evaluation of bone cements impregnated with selenium nanoparticles stabilized by phosphatidylcholine (PC) for application in bone","paper_abstract":"Karahaliloǧlu, Zeynep ( Aksaray, Yazar ) ; One of the most common prophylactic techniques to solve prosthetic joint infection (PJI) is incorporation of antibiotics into acrylic bone cement to prevent bacterial colonization and proliferation by providing local antibiotic delivery directly at the implant site. Further, there has been a significant concern over the efficacy of commonly used antibiotics within bone cement due to the rise in multi-drug resistant (MDR) microorganisms. Selenium is an essential trace element that has multiple beneficial effects for human health and its chemotherapeutic action is well known. It was reported that nanostructured selenium enhanced bone cell adhesion and has an increased osteoblast function. In this context, we used the selenium nanoparticles (SeNPs) to improve antibacterial and antioxidant properties of poly (methyl methacrylate) (PMMA) and tri calcium phosphate (TCP)-based bone cements, and to reduce of the infection risk caused by orthopedic implants. As another novelty of this study, we proposed phosphatidylcholine (PC) as a unique and natural stabilizer in the synthesis of selenium nanoparticles. After the structural analysis of the prepared bone cements was performed, in vitro osteointegration and antibacterial efficiency were tested using MC3T-E1 (mouse osteoblastic cell line) and SaOS-2 (human primary osteogenic sarcoma) cell lines, and S. aureus (Gram positive) and E.coli (Gram negative) strains, respectively. More importantly, PC-SeNPs-reinforced bone cements exhibited significant effect against E. coli, compared to S. aureus and a dose-dependent antibacterial activity against both bacterial strains tested. Meanwhile, these bone cements induced the apoptosis of SaOS-2 through increased reactive oxygen species without negatively influencing the viability of the healthy cell line. Furthermore, the obtained confocal images revealed that PC-SeNPs (103.7 ± 0.56 nm) altered the cytoskeletal structure of SaOS-2 owing to SeNPs-induced apoptosis, when MC3T3-E1 cells showed a typical spindle-shaped morphology. Taken together, these results highlighted the potential of PC-SeNPs-doped bone cements as an effective graft material in bone applications.","published_in":"","year":"2020","subject_orig":"Bone Cements; Nanoparticles; Phosphatidylcholine (PC); Poly (methyl methacrylate) (PMMA); Selenium; Tri Calcium Phosphate (TCP)","subject":"Bone Cements; Nanoparticles; Phosphatidylcholine (PC); Poly (methyl methacrylate) (PMMA); Selenium; Tri Calcium Phosphate (TCP)","authors":"Karahaliloǧlu, Zeynep; Kılıçay, Ebru","link":"https://hdl.handle.net/20.500.12451/7662","oa_state":"0","url":"701bf8a4fb2e3efdf285b78505d9d8e747ef9e0e514c77560c07ce8a3fc83731","relevance":23,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-435.7485941741368,"y":153.5405437969941,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"701bf8a4fb2e3efdf285b78505d9d8e747ef9e0e514c77560c07ce8a3fc83731","authors_list":["Zeynep Karahaliloǧlu","Ebru Kılıçay"],"authors_string":"Zeynep Karahaliloǧlu, Ebru Kılıçay","oa":false,"free_access":false,"oa_link":"https://hdl.handle.net/20.500.12451/7662","outlink":"https://hdl.handle.net/20.500.12451/7662","list_link":{"address":"https://hdl.handle.net/20.500.12451/7662","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Bone Cements; Nanoparticles; Phosphatidylcholine (PC); Poly (methyl methacrylate) (PMMA); Selenium; Tri Calcium Phosphate (TCP)","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-435.7485941741368,"zoomedY":153.5405437969941,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"82afa23b4342193833866cddcdf4754202d262500f6e0773c0e5698c6172e8be","relation":"Turkish Journal Of Chemistry; Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı; 1300-0527; https://doi.org/10.3906/kim-2004-26; https://hdl.handle.net/20.500.12831/73; doi:10.3906/kim-2004-26; 44; 4; 1134; 1147","identifier":"https://doi.org/10.3906/kim-2004-26; https://hdl.handle.net/20.500.12831/73","title":"A comparative study on the monovalent and divalent cation separation of polymeric films and membranes from salt solutions under diffusion-dialysis","paper_abstract":"Deligoz, Huseyin/0000-0002-0915-2911; Cengiz, Hacer Yesim/0000-0001-6684-7771 ; WOS:000560919000020 ; This study deals with selective separation of mono- and divalent cations from aqueous salt solutions using polymeric films based on polyethylene (PE) and polyamide6 (PA6), and two different commercial nanofiltration (NF) membranes. The diffusion rates (D) of ions (Na+ and Ca2+) , separation factors (alpha) and ion rejections (R) of the films and NF membranes are examined comparatively as well as their surface morphology and hydrophilicity. It is observed that the diffusion rates of Na+ are in the range of 0.7-1.8 x 10(-8) cm(2).s(-1) in the decreasing order of PE > NF90 > NF270 > PA6 while Ca2+ shows diffusion rates of 7.4-18.4 x 10(-8) cm(2).s(-1) in the increasing order of NF270 > NF90 approximate to PA6 > PE. Rejection values of the polymeric films and NF membranes against to Na+ and Ca2+ vary between 90% and 99.6%.The highest alpha (Ca2+/Na+) is found to be 20 for PA6 film D, alpha, and R value of both polymeric films and NF membranes are strongly affected by the existence of osmosis during diffusion-dialysis and the sizes of hydrated sodium and calcium ions. In conclusion, the film based on PA6 may be a good alternative for selective separation of mono- and divalent cations.","published_in":"","year":"2020","subject_orig":"Ion separation; diffusion; polymeric films; nanofiltration membranes; separation factor","subject":"Ion separation; diffusion; polymeric films; nanofiltration membranes; separation factor","authors":"Acar, Serkan; Cengiz, Hacer Yeşim; Ergün, Ayça; Konyalı, Eymen; Deligöz, Hüseyin","link":"https://doi.org/10.3906/kim-2004-26","oa_state":"1","url":"82afa23b4342193833866cddcdf4754202d262500f6e0773c0e5698c6172e8be","relevance":28,"resulttype":["Journal/newspaper article"],"doi":"https://doi.org/10.3906/kim-2004-26","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-557.5899131748912,"y":-440.45580929729573,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"82afa23b4342193833866cddcdf4754202d262500f6e0773c0e5698c6172e8be","authors_list":["Serkan Acar","Hacer Yeşim Cengiz","Ayça Ergün","Eymen Konyalı","Hüseyin Deligöz"],"authors_string":"Serkan Acar, Hacer Yeşim Cengiz, Ayça Ergün, Eymen Konyalı, Hüseyin Deligöz","oa":true,"free_access":false,"oa_link":"https://doi.org/10.3906/kim-2004-26","outlink":"https://doi.org/10.3906/kim-2004-26","list_link":{"address":"https://doi.org/10.3906/kim-2004-26","isDoi":true},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Ion separation; diffusion; polymeric films; nanofiltration membranes; separation factor","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-557.5899131748912,"zoomedY":-440.45580929729573,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"94633babeedb1ef2d33c0e69d55dea9c953488fb31ff793f9773191e7738b996","relation":"https://oatao.univ-toulouse.fr/25557/1/Candotto_25557.pdf; HAL : hal-02496519; Candotto Carniel, Fabio and Fortuna, Lorenzo and Nepi, Massimo and Cai, Giampiero and Del Casino, Cecilia and Adami, Giampiero and Bramini, Mattia and Bosi, Susanna and Flahaut, Emmanuel and Martín, Cristina and Vázquez, Ester and Prato, Maurizio and Tretiach, Mauro. Beyond graphene oxide acidity: Novel insights into graphene related materials effects on the sexual reproduction of seed plants. (2020) Journal of Hazardous Materials, 393. 122380. ISSN 0304-3894","identifier":"https://oatao.univ-toulouse.fr/25557/; https://oatao.univ-toulouse.fr/25557/1/Candotto_25557.pdf; https://doi.org/10.1016/j.jhazmat.2020.122380","title":"Beyond graphene oxide acidity: Novel insights into graphene related materials effects on the sexual reproduction of seed plants","paper_abstract":"Graphene related materials (GRMs) are currently being used in products and devices of everyday life and this strongly increases the possibility of their ultimate release into the environment as waste items. GRMs have several effects on plants, and graphene oxide (GO) in particular, can affect pollen germination and tube growth due to its acidic properties. Despite the socio-economic importance of sexual reproduction in seed plants, the effect of GRMs on this process is still largely unknown. Here, Corylus avellana L. (common Hazel) pollen was germinated in-vitro with and without 1−100 μg mL−1 few-layer graphene (FLG), GO and reduced GO (rGO) to identify GRMs effects alternative to the acidification damage caused by GO. At 100 μg mL−1 both FLG and GO decreased pollen germination, however only GO negatively affected pollen tube growth. Furthermore, GO adsorbed about 10 % of the initial Ca2+ from germination media accounting for a further decrease in germination of 13 % at the pH created by GO. In addition, both FLG and GO altered the normal tip-focused reactive oxygen species (ROS) distribution along the pollen tube. The results provided here help to understand GRMs effect on the sexual reproduction of seed plants and to address future in-vivo studies.","published_in":"","year":"2020","subject_orig":"Matériaux; Calcium imbalance; Ecotoxicity; Graphene oxide; Nanomaterials; Phytonanotechnology; Pollen","subject":"Matériaux; Calcium imbalance; Ecotoxicity; Graphene oxide; Nanomaterials; Phytonanotechnology; Pollen","authors":"Candotto Carniel, Fabio; Fortuna, Lorenzo; Nepi, Massimo; Cai, Giampiero; Del Casino, Cecilia; Adami, Giampiero; Bramini, Mattia; Bosi, Susanna; Flahaut, Emmanuel; Martín, Cristina; Vázquez, Ester; Prato, Maurizio; Tretiach, Mauro","link":"https://oatao.univ-toulouse.fr/25557/","oa_state":"1","url":"94633babeedb1ef2d33c0e69d55dea9c953488fb31ff793f9773191e7738b996","relevance":48,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-308.92790072564645,"y":-559.6436202061881,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"94633babeedb1ef2d33c0e69d55dea9c953488fb31ff793f9773191e7738b996","authors_list":["Fabio Candotto Carniel","Lorenzo Fortuna","Massimo Nepi","Giampiero Cai","Cecilia Del Casino","Giampiero Adami","Mattia Bramini","Susanna Bosi","Emmanuel Flahaut","Cristina Martín","Ester Vázquez","Maurizio Prato","Mauro Tretiach"],"authors_string":"Fabio Candotto Carniel, Lorenzo Fortuna, Massimo Nepi, Giampiero Cai, Cecilia Del Casino, Giampiero Adami, Mattia Bramini, Susanna Bosi, Emmanuel Flahaut, Cristina Martín, Ester Vázquez, Maurizio Prato, Mauro Tretiach","oa":true,"free_access":false,"oa_link":"https://oatao.univ-toulouse.fr/25557/","outlink":"https://oatao.univ-toulouse.fr/25557/","list_link":{"address":"https://oatao.univ-toulouse.fr/25557/","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Matériaux; Calcium imbalance; Ecotoxicity; Graphene oxide; Nanomaterials; Phytonanotechnology; Pollen","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-308.92790072564645,"zoomedY":-559.6436202061881,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"9ca9e17b701676fb108104dd1d21e96edfa68b1a15190cf0b7c6ef61f60da261","relation":"15th International Conference on Industrial Manufacturing and Metallurgy, ICIMM 2020; Kapustin F. L. Utilization of final tailings concentration of titano-magnetite ores in Portland cement production / F. L. Kapustin, N. N. Bashkatov. — DOI 10.1088/1757-899X/966/1/012052 // IOP Conference Series: Materials Science and Engineering . — 2020. — Vol. 966. — 12052.; 1757-8981; http://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85097111436; http://hdl.handle.net/10995/94301; 85097111436; doi:10.1088/1757-899X/966/1/012052","identifier":"http://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85097111436; http://hdl.handle.net/10995/94301; https://doi.org/10.1088/1757-899X/966/1/012052","title":"Utilization of final tailings concentration of titano-magnetite ores in Portland cement production","paper_abstract":"When producing iron ore concentrate at Kachkanarsk integrated mining works 2 types of wastes are formed, namely: final tailings of dry magnetic separation (DMS) and final tailings of wet magnetic separation (WMS). Final tailings of wet magnetic separation (WMS) are pulled off or dumped into disposal area up to 45mln tons annually causing great damages to the environment. These final tailings are finely dispersed materials, their chemical composition is oxides of silicon, aluminium, calcium and iron in general. All this allows to use the wastes under consideration to produce Portland cement clinker replacing clayey and iron components in the raw material mixture completely and limestone partially. The replacement of clay with final tailings of ore enrichment are suitable to manufacture clinker raw material mixture allowing to use two-component raw mix instead of three-component and four-component one thus simplifying the technology of cement production and improving the ecological situation in Sverdlovsk region. The utilization of final tailings for concentration of titano-magnetite ores decreases fuel consumption when burning clinker compared to the traditional compositions. Experimental cement meets all the requirements of the Russian Standard 10178 as to their chemical and physic-mechanical properties and have grade 500. © Published under licence by IOP Publishing Ltd.","published_in":"IOP Conference Series: Materials Science and Engineering","year":"2020","subject_orig":"not available","subject":"cement production; concentration titano; final tailings","authors":"Kapustin, F. L.; Bashkatov, N. N.","link":"http://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85097111436","oa_state":"1","url":"9ca9e17b701676fb108104dd1d21e96edfa68b1a15190cf0b7c6ef61f60da261","relevance":120,"resulttype":["Conference object"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-170.20411370443657,"y":-546.4579319058448,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"9ca9e17b701676fb108104dd1d21e96edfa68b1a15190cf0b7c6ef61f60da261","authors_list":["F. L. Kapustin","N. N. Bashkatov"],"authors_string":"F. L. Kapustin, N. N. Bashkatov","oa":true,"free_access":false,"oa_link":"http://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85097111436","outlink":"http://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85097111436","list_link":{"address":"http://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85097111436","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"not available","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-170.20411370443657,"zoomedY":-546.4579319058448,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"a444dc751a9e566eefb680a9ffc02e89c7a87510fedd9d064be012730c12d4f7","relation":"http://www.documentation.ird.fr/hor/fdi:010079580; oai:ird.fr:fdi:010079580; Ammar F. H., Deschamps Pierre, Chkir N., Zouari K., Agoune A., Hamelin B. Uranium isotopes as tracers of groundwater evolution in the Complexe Terminal aquifer of southern Tunisia. Quaternary International, 2020, 547 (Special Issue), p. 33-49.","identifier":"http://www.documentation.ird.fr/hor/fdi:010079580","title":"Uranium isotopes as tracers of groundwater evolution in the Complexe Terminal aquifer of southern Tunisia","paper_abstract":"The Complexe Terminal (CT) multi-layer aquifer is formed by Neogene/Paleogene sand deposits, Upper Senonian (Campanian-Maastrichtian limestones) and Turonian carbonates. The chemical composition and isotopes of carbon and uranium were investigated in groundwater sampled from the main hydrogeological units of the (CT) aquifer in southern Tunisia. We paid special attention to the variability of uranium contents and isotopes ratio (U-234/U-238) to provide a better understanding of the evolution of the groundwater system. Uranium concentrations range from 1.5 to 19.5 ppb, typical of oxic or mildly reducing conditions in groundwaters. The lowest concentrations are found southeast of the study area, where active recharge is supposed to take place. When looking at the isotope composition, it appears that all the samples, including those from carbonate levels, are in radioactive disequilibrium with significant U-234 excess. A clear-cut distinction is observed between Turonian and Senonian carbonate aquifers on the one hand, with U-234/U-238 activity ratios between 1.1 and 1.8, and the sandy aquifer on the other hand, showing higher ratios from 1.8 to 3.2. The distribution of uranium in this complex aquifer system seems to be in agreement with the lithological variability and are ultimately a function of a number of physical and chemical factors including the uranium content of the hosting geological formation, water-rock interaction and mixing between waters having different isotopic signatures. Significant relationships also appear when comparing the uranium distribution with the major ions composition. It is noticeable that uranium is better correlated with sulfate, calcium and magnesium than with other major ions as chloride or bicarbonate. The C-14 activities and delta C-13 values of DIC cover a wide range of values, from 1.1 pmc to 30.2 pmc and from -3.6% to -10.7%, respectively. C-14 model ages estimated by the Fontes and Garnier model are all younger than 22 Ka and indicate that the recharge of CT groundwater occurred mainly during the end of the last Glacial and throughout the Holocene.","published_in":"","year":"2020","subject_orig":"CT southern Tunisia; Uranium isotopes; Radicarbon; Holocene; Water-rock interaction; Mixing","subject":"CT southern Tunisia; Uranium isotopes; Radicarbon; Holocene; Water-rock interaction; Mixing","authors":"Ammar, F. H.; Deschamps, Pierre; Chkir, N.; Zouari, K.; Agoune, A.; Hamelin, B.","link":"http://www.documentation.ird.fr/hor/fdi:010079580","oa_state":"2","url":"a444dc751a9e566eefb680a9ffc02e89c7a87510fedd9d064be012730c12d4f7","relevance":31,"resulttype":["Text"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-547.0050903028642,"y":-304.26770349437055,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"a444dc751a9e566eefb680a9ffc02e89c7a87510fedd9d064be012730c12d4f7","authors_list":["F. H. Ammar","Pierre Deschamps","N. Chkir","K. Zouari","A. Agoune","B. Hamelin"],"authors_string":"F. H. Ammar, Pierre Deschamps, N. Chkir, K. Zouari, A. Agoune, B. Hamelin","oa":false,"free_access":false,"oa_link":"http://www.documentation.ird.fr/hor/fdi:010079580","outlink":"http://www.documentation.ird.fr/hor/fdi:010079580","list_link":{"address":"http://www.documentation.ird.fr/hor/fdi:010079580","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"CT southern Tunisia; Uranium isotopes; Radicarbon; Holocene; Water-rock interaction; Mixing","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-547.0050903028642,"zoomedY":-304.26770349437055,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"c936acc556a06488dabcf5995404de3c26844fdef38ee89eb28db1fd04b68478","relation":"http://hdl.handle.net/11143/17853","identifier":"http://hdl.handle.net/11143/17853","title":"Valorisation des coquilles de palourde et du sable de dragage dans les matériaux cimentaires","paper_abstract":"Ce travail de recherche s’inscrit dans le cadre de la valorisation des coquilles de palourde et du sable de dragage provenant des Îles De la Madeleine (IDM). Notre vision consiste à proposer des formulations de matériaux cimentaires alternatifs à base de ces matières résiduelles, dans une logique d’économie circulaire, permettant la réduction de l’impact environnemental du ciment et la dépendance aux matières premières conventionnelles. A cet effet, l’objectif était de fabriquer des pâtes de ciment et des mortiers simples et économiques, sans avoir recours à des adjuvants chimiques pour améliorer les performances des mélanges. Pour ce faire, la résistance à la compression uniaxiale a été fixée comme étant la propriété primordiale pour optimiser les formulations. La première partie a été consacrée à la formulation des pâtes de ciment afin d’étudier le potentiel de valorisation de la poudre de palourde pour remplacer partiellement le ciment. En effet, la caractérisation chimique de cette poudre a montré qu’elle est majoritairement composée de carbonate de calcium ce qui justifie son utilisation comme un filler calcaire dans le ciment. On a choisi de faire varier trois paramètres principaux qui sont le taux de remplacement de la poudre de palourde dans le ciment, la taille des particules de cette poudre et l’effet de la calcination sur le développement des résistances. Les résultats ont montré que : - Le remplacement partiel du ciment par la poudre brute (5%, 10% et 15%) a engendré une diminution des résistances des pâtes par rapport aux témoins. Cela a ramené à suggérer 5% comme le taux de remplacement le plus approprié. - La calcination de la poudre à 800°C a permis d’atteindre des résistances des pâtes similaires à celles des mélanges de référence. Donc 5% a été suggéré comme le taux de substitution de la poudre calcinée le plus approprié. - La variation de la taille des particules de la poudre brute dans les pâtes de ciment (D < 80 µm, D < 160 µm et D < 315 µm) a montré que l’hydratation était plus rapide à 7 jours pour les mélanges contenant les poudres les plus fines. Toutefois, cette variation n’a pas eu d’effet sur le développement des résistances à 28 jours. En outre, l’observation au MEB des échantillons des pâtes a montré l’absence de réactions chimiques entre la poudre de palourde et les produits d’hydratation. La deuxième partie de ce projet de recherche a porté sur la formulation des mortiers. Les résultats ont montré que : - Le remplacement partiel du ciment (5%, 10%) par la poudre non calcinée a induit une diminution des résistances des mortiers contenant 100% de sable de dragage, par rapport aux témoins. Donc, 5% a été proposé comme le taux de remplacement le plus approprié. - Le remplacement du sable naturel (50% et 100%) par les coquilles de palourde concassées, tout en substituant 5% du ciment par la poudre de palourde brute a engendré une diminution significative de la résistance. Donc, la substitution du sable ordinaire par les coquilles de palourde concassées ne semble pas viable. Ce travail constitue une initiation permettant d’évaluer le potentiel de valorisation des coquilles de palourde des IDM pour la production des matériaux cimentaires locaux alternatifs.","published_in":"","year":"2020","subject_orig":"Coquilles; Sable de dragage; Matériaux cimentaires; Résistance à la compression; Valorisation; Remplacement; Ciment; Granulats fins","subject":"Coquilles; Sable de dragage; Matériaux cimentaires; Résistance à la compression; Valorisation; Remplacement; Ciment; Granulats fins","authors":"Djebali, Chiraz","link":"http://hdl.handle.net/11143/17853","oa_state":"2","url":"c936acc556a06488dabcf5995404de3c26844fdef38ee89eb28db1fd04b68478","relevance":43,"resulttype":["Other/Unknown material"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-672.499274854171,"y":466.0006210187234,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"c936acc556a06488dabcf5995404de3c26844fdef38ee89eb28db1fd04b68478","authors_list":["Chiraz Djebali"],"authors_string":"Chiraz Djebali","oa":false,"free_access":false,"oa_link":"http://hdl.handle.net/11143/17853","outlink":"http://hdl.handle.net/11143/17853","list_link":{"address":"http://hdl.handle.net/11143/17853","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Coquilles; Sable de dragage; Matériaux cimentaires; Résistance à la compression; Valorisation; Remplacement; Ciment; Granulats fins","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-672.499274854171,"zoomedY":466.0006210187234,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"eb0638f33246b98120f62417f5effb4fc4188f4a93cda8c1d423ed4e83e29d31","relation":"International Research Conference; 9789550481293; http://www.erepo.lib.uwu.ac.lk/bitstream/handle/123456789/6093/proceeding_oct_08-455.pdf?sequence=1&isAllowed=y","identifier":"http://www.erepo.lib.uwu.ac.lk/bitstream/handle/123456789/6093/proceeding_oct_08-455.pdf?sequence=1&isAllowed=y","title":"Development of a Novel Dental Filling Material Using Hydroxyapatite Derived from Waste Oyster Shells ; International Research Conference 2020","paper_abstract":"The present study aimed at developing a novel zinc phosphate based dental cement by adding Pentacalcium hydroxide triphosphate (hydroxyapatite) as a reinforcing filler to investigate the mechanical and elution properties of the prepared specimens. Here waste oyster shells of Crassostrea madrasensis were calcined to obtain Oxocalcium. The Calcium dihydroxide precursor for the synthesis of hydroxyapatite by wet precipitation method at room temperature was prepared by dissolving Oxocalcium in water. Synthesized hydroxyapatite was added into zinc phosphate powder in seven different ratios and specimens were fabricated. X-ray fluorescence spectroscopy results of oyster shells showed that Oxocalcium (88.5%) was the major oxide while Silicon dioxide and Iron (Ⅲ) oxide were present in trivial amounts. The stoichiometric calcium/phosphorus ratio of synthesized hydroxyapatite was close to 1.7. Both Fourier Transform Infrared spectroscopy and X-ray Diffraction results of unsintered and sintered hydroxyapatite were compatible with the results of the commercial compound. The particle size of the sintered hydroxyapatite was 1.518×10-6 m. Zinc phosphate cement with 10% hydroxyapatite was identified as the ideal percentage that showed the best mechanical and chemical properties with the highest compressive and diametral tensile strengths which were 66.85×106 Nm-2 are 18.88 Nm-2 respectively. Further, it showed the lowest elution percentage in pH 3 and 5 aqueous 2-Hydroxypropanoic acid and water. Hence hydroxyapatite synthesized from waste can be used as reinforcing filler in zinc phosphate dental cement. Keywords: Zinc phospate dental cement, Hydroxyapatite, Crassostrea madrasensis, oysters","published_in":"","year":"2020","subject_orig":"Materials Sciences; Mineral Sciences","subject":"Materials Sciences; Mineral Sciences","authors":"Uresha, M.T.S.; Pitawala, H.M.J.C.","link":"http://www.erepo.lib.uwu.ac.lk/bitstream/handle/123456789/6093/proceeding_oct_08-455.pdf?sequence=1&isAllowed=y","oa_state":"1","url":"eb0638f33246b98120f62417f5effb4fc4188f4a93cda8c1d423ed4e83e29d31","relevance":39,"resulttype":["Other/Unknown material"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-270.291294883214,"y":-493.253929655085,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"eb0638f33246b98120f62417f5effb4fc4188f4a93cda8c1d423ed4e83e29d31","authors_list":["M.T.S. Uresha","H.M.J.C. Pitawala"],"authors_string":"M.T.S. Uresha, H.M.J.C. Pitawala","oa":true,"free_access":false,"oa_link":"http://www.erepo.lib.uwu.ac.lk/bitstream/handle/123456789/6093/proceeding_oct_08-455.pdf?sequence=1&isAllowed=y","outlink":"http://www.erepo.lib.uwu.ac.lk/bitstream/handle/123456789/6093/proceeding_oct_08-455.pdf?sequence=1&isAllowed=y","list_link":{"address":"http://www.erepo.lib.uwu.ac.lk/bitstream/handle/123456789/6093/proceeding_oct_08-455.pdf?sequence=1&isAllowed=y","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Materials Sciences; Mineral Sciences","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-270.291294883214,"zoomedY":-493.253929655085,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"ec2bb48506443390ad42e81607d3c190082e8a290376254b9ac39f0e6b632b4e","relation":"http://hdl.handle.net/20.500.11816/3592; 202640620","identifier":"http://hdl.handle.net/20.500.11816/3592","title":"Classificação e propriedades de materiais de substituição óssea num enxerto ósseo na cavidade oral","paper_abstract":"O número de regenerações ósseas orais aumentou nos últimos anos com o crescente aumento de colocação de implantes dentários e outras cirurgias orais. As desvantagens, como dores pós-operatórias, quantidade limitada ou ainda qualidade insuficiente do enxerto autólogo levou ao uso de materiais provenientes do osso humano e animal. Hoje em dia, a prática dentária inclina-se para o uso de enxertos sintéticos em que estes materiais devem ter propriedades similares ao osso humano. Existem muitos produtos nesta família de materiais sendo difícil para o Médico Dentista fazer uma escolha devido à enorme quantidade de materiais e à falta de informação. Palavras chave: «Substitutos ósseos maxilares», «Enxerto ósseo vidro bioativo oral», «substituto do osso sintético oral», «Cerâmicas em fosfato de cálcio enxerto ósseo» Abstract: The number of bone regenerations has increased in recent years with the increased placement of dental implants and others oral cirurgies. The disadvantages, such as postoperative pains, limited quantity or even insufficient quality of the autologous graft led to the use of materials derivatied (coming) from human and animal bone. Nowadays, dental practice is inclined towards the use of synthetic grafts, these materials must have properties similar to the human bone. There are many products in this family of materials, it is difficult for the dentist to make a choice because of the sheer amount of materials and the lack of information.","published_in":"","year":"2020","subject_orig":"Maxillar bone substitute; Bioactive glass bone graft oral; Oral synthetic bone substitute; Calcium phosphate ceramic bone graft oral","subject":"Maxillar bone substitute; Bioactive glass bone graft oral; Oral synthetic bone substitute; Calcium phosphate ceramic bone graft oral","authors":"Loison, Victorien Andre Gerard","link":"http://hdl.handle.net/20.500.11816/3592","oa_state":"1","url":"ec2bb48506443390ad42e81607d3c190082e8a290376254b9ac39f0e6b632b4e","relevance":35,"resulttype":["Thesis: master"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-453.76990236960484,"y":-438.19290535881714,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"ec2bb48506443390ad42e81607d3c190082e8a290376254b9ac39f0e6b632b4e","authors_list":["Victorien Andre Gerard Loison"],"authors_string":"Victorien Andre Gerard Loison","oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/20.500.11816/3592","outlink":"http://hdl.handle.net/20.500.11816/3592","list_link":{"address":"http://hdl.handle.net/20.500.11816/3592","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Maxillar bone substitute; Bioactive glass bone graft oral; Oral synthetic bone substitute; Calcium phosphate ceramic bone graft oral","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-453.76990236960484,"zoomedY":-438.19290535881714,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"f54e7ca18ed50fbe62dd299654a5f773d0584a760243c3736f0d5a0b11157cd0","relation":"http://hdl.handle.net/10210/424757; uj:36338; Banganyi, F.C., Nyembwe, D.K.: Influence of rehydration and activation on cation exchange capacity and swelling index of foundry sodium bentonite from different deposits.","identifier":"http://hdl.handle.net/10210/424757","title":"Influence of rehydration and activation on cation exchange capacity and swelling index of foundry sodium bentonite from different deposits","paper_abstract":"Abstract: Bentonite is the most widely used foundry binder. Most of the iron castings are made in greensand systems which make use of bentonite as a binder. The bentonite used in greensand moulding is usually activated with sodium carbonate to achieve desirable properties. Activation of bentonite is known to improve mould related properties like giving a high wet tensile strength and improving the durability. The practice of activation is more common with calcium bentonite. A number of bentonite deposits tend to remain unbeneficiated due to their low cation exchange capacity (CEC) which are regarded as low quality commercial grade. The primary characteristic that shows the increased activation is the swelling index of the bentonite. This study investigated the influence of rehydration and activation in improving the quality of low commercial grade sodium bentonite. The bentonite samples were activated with sodium carbonate. Rehydration and activation was seen to improve the CEC and swelling index. The increase in CEC and swelling index was however not consistent with the gains in sodium.","published_in":"","year":"2020","subject_orig":"not available","subject":"activation cation; bentonite deposits; capacity swelling","authors":"Banganyi, Farai Chrispen; Nyembwe, Didier Kasongo","link":"http://hdl.handle.net/10210/424757","oa_state":"2","url":"f54e7ca18ed50fbe62dd299654a5f773d0584a760243c3736f0d5a0b11157cd0","relevance":46,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-628.4969101180396,"y":-173.53731354398727,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"f54e7ca18ed50fbe62dd299654a5f773d0584a760243c3736f0d5a0b11157cd0","authors_list":["Farai Chrispen Banganyi","Didier Kasongo Nyembwe"],"authors_string":"Farai Chrispen Banganyi, Didier Kasongo Nyembwe","oa":false,"free_access":false,"oa_link":"http://hdl.handle.net/10210/424757","outlink":"http://hdl.handle.net/10210/424757","list_link":{"address":"http://hdl.handle.net/10210/424757","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"not available","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-628.4969101180396,"zoomedY":-173.53731354398727,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"f7ae53f729ab4fce132bc55d055e478f52946c73d958c62b670ca6dc511d3759","relation":"Dermatologic Therapy; Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı; 1396-0296; 1529-8019; https://doi.org/10.1111/dth.13232; https://hdl.handle.net/20.500.12831/1364; doi:10.1111/dth.13232; 33; 2","identifier":"https://doi.org/10.1111/dth.13232; https://hdl.handle.net/20.500.12831/1364","title":"Relationship between fecal calprotectin level and disease activity in patients with hidradenitis suppurativa","paper_abstract":"Eser, Emel/0000-0001-7333-3998 ; WOS:000511212700001 ; PubMed ID: 31985885 ; Background Hidradenitis suppurativa is a chronic, inflammatory, recurrent disease with recurrent abscesses, and sinus tract formation leading to scarring. Calprotectin has immunomodulatory, antimicrobial, and antiproliferative properties and is a calcium-binding protein primarily found in the neutrophil cytoplasm. In recent years, a significant relationship between the activity of various diseases and the level of calprotectin has led to the conclusion that there may be a similar relationship in hidradenitis suppurativa. Objective To determine the relationship between disease activity and fecal calprotectin levels in patients with hidradenitis suppurativa. Methods Fifty patients with hidradenitis suppurativa (case group) who present to the Dermatology and Venerology Department between December 6, 2017, and April 6, 2018, and 36 healthy volunteers (control group) were enrolled in our study. Fecal calprotectin levels we requantitatively calculated using enzyme-linked immunosorbent assay. Results In patients with active hidradenitis suppurativa, the level of stool calprotectin was higher than that of patientsin remission, and this difference was statistically significant (p < .001). There was no statistically significant correlation between disease stage and fecal calprotectin levels in patients with hidradenitis suppurativa (p = .14). Age, sex, smoking and alcohol use, anti-TNF-alpha treatment, and fecal calprotectin levels were not significantly correlated. In our study, fecal calprotectin levels in patients with active hidradenitis suppurativa were higher than inpatients in remission (p < .001). Conclusion Fecal calprotectin can beused as a marker of disease activity in hidradenitis suppurativa.","published_in":"","year":"2020","subject_orig":"calprotectin; disease activity; hidradenitis suppurativa","subject":"calprotectin; disease activity; hidradenitis suppurativa","authors":"Eser, Emel; Engin, Burhan; Yuksel, Pelin; Kocazeybek, Bekir Sami; Kutlubay, Zekayi; Serdaroglu, Server; Askin, Ozge","link":"https://doi.org/10.1111/dth.13232","oa_state":"0","url":"f7ae53f729ab4fce132bc55d055e478f52946c73d958c62b670ca6dc511d3759","relevance":29,"resulttype":["Journal/newspaper article"],"doi":"https://doi.org/10.1111/dth.13232","cluster_labels":"Aplysina aerophoba, Bone cements, Cement production","x":-748.8087044198608,"y":33.348352352502566,"area_uri":1,"area":"Aplysina aerophoba, Bone cements, Cement production","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"f7ae53f729ab4fce132bc55d055e478f52946c73d958c62b670ca6dc511d3759","authors_list":["Emel Eser","Burhan Engin","Pelin Yuksel","Bekir Sami Kocazeybek","Zekayi Kutlubay","Server Serdaroglu","Ozge Askin"],"authors_string":"Emel Eser, Burhan Engin, Pelin Yuksel, Bekir Sami Kocazeybek, Zekayi Kutlubay, Server Serdaroglu, Ozge Askin","oa":false,"free_access":false,"oa_link":"https://doi.org/10.1111/dth.13232","outlink":"https://doi.org/10.1111/dth.13232","list_link":{"address":"https://doi.org/10.1111/dth.13232","isDoi":true},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"calprotectin; 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Materials Chemistry; Mechanics of Materials; Metals and Alloys","authors":"Bian, Mingzhe; Huang, Xinsheng; Chino, Yasumasa","link":"http://dx.doi.org/10.1016/j.jallcom.2020.155017","oa_state":"2","url":"5877755dc79bad5f4e60d3c4f5efc672c70b7619835514b94a48932475740479","relevance":64,"resulttype":["Journal/newspaper article"],"doi":"https://dx.doi.org/10.1016/j.jallcom.2020.155017","cluster_labels":"Materials Chemistry, Ceramics and composites, Mechanics of materials","x":157.22123946489492,"y":-308.47824875087593,"area_uri":12,"area":"Materials Chemistry, Ceramics and composites, Mechanics of materials","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"5877755dc79bad5f4e60d3c4f5efc672c70b7619835514b94a48932475740479","authors_list":["Mingzhe Bian","Xinsheng Huang","Yasumasa Chino"],"authors_string":"Mingzhe Bian, Xinsheng Huang, Yasumasa Chino","oa":false,"free_access":false,"oa_link":"http://dx.doi.org/10.1016/j.jallcom.2020.155017","outlink":"http://dx.doi.org/10.1016/j.jallcom.2020.155017","list_link":{"address":"https://dx.doi.org/10.1016/j.jallcom.2020.155017","isDoi":true},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Mechanical Engineering; Materials Chemistry; Mechanics of Materials; Metals and Alloys","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":157.22123946489492,"zoomedY":-308.47824875087593,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"90464bfebd053c7f6bbbd25caa50acaa5be9baf4801a03451bdb4acd142ce879","relation":"","identifier":"http://dx.doi.org/10.1016/j.ceramint.2020.05.029; https://api.elsevier.com/content/article/PII:S0272884220313146?httpAccept=text/xml; https://api.elsevier.com/content/article/PII:S0272884220313146?httpAccept=text/plain","title":"Phase development and hydration kinetics of belite-calcium sulfoaluminate cements at different curing temperatures","paper_abstract":"No abstract available","published_in":"Ceramics International ; volume 46, issue 18, page 29421-29428 ; ISSN 0272-8842","year":"2020","subject_orig":"Process Chemistry and Technology; Materials Chemistry; Electronic, Optical and Magnetic Materials; Surfaces, Coatings and Films; Ceramics and Composites","subject":"Process Chemistry and Technology; Materials Chemistry; Electronic, Optical and Magnetic Materials; Surfaces, Coatings and Films; Ceramics and Composites","authors":"Borštnar, Maruša; Daneu, Nina; Dolenec, Sabina","link":"http://dx.doi.org/10.1016/j.ceramint.2020.05.029","oa_state":"1","url":"90464bfebd053c7f6bbbd25caa50acaa5be9baf4801a03451bdb4acd142ce879","relevance":58,"resulttype":["Journal/newspaper article"],"doi":"https://dx.doi.org/10.1016/j.ceramint.2020.05.029","cluster_labels":"Materials Chemistry, Ceramics and composites, Mechanics of materials","x":109.10527826655252,"y":-314.76024949399766,"area_uri":12,"area":"Materials Chemistry, Ceramics and composites, Mechanics of materials","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"90464bfebd053c7f6bbbd25caa50acaa5be9baf4801a03451bdb4acd142ce879","authors_list":["Maruša Borštnar","Nina Daneu","Sabina Dolenec"],"authors_string":"Maruša Borštnar, Nina Daneu, Sabina Dolenec","oa":true,"free_access":false,"oa_link":"http://dx.doi.org/10.1016/j.ceramint.2020.05.029","outlink":"http://dx.doi.org/10.1016/j.ceramint.2020.05.029","list_link":{"address":"https://dx.doi.org/10.1016/j.ceramint.2020.05.029","isDoi":true},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Process Chemistry and Technology; 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Materials Chemistry; Electronic, Optical and Magnetic Materials; Surfaces, Coatings and Films; Ceramics and Composites","subject":"Process Chemistry and Technology; Materials Chemistry; Electronic, Optical and Magnetic Materials; Surfaces, Coatings and Films; Ceramics and Composites","authors":"Tan, Z.Y.; Yang, Z.H.; Zhu, W.; Yang, L.; Zhou, Y.C.; Hu, X.P.","link":"http://dx.doi.org/10.1016/j.ceramint.2020.06.316","oa_state":"2","url":"9cf373ba03af64ed98fb0cae7aa00958eccfbf128e6d3a2f546d6911df282866","relevance":59,"resulttype":["Journal/newspaper article"],"doi":"https://dx.doi.org/10.1016/j.ceramint.2020.06.316","cluster_labels":"Materials Chemistry, Ceramics and composites, Mechanics of materials","x":108.98195145159717,"y":-314.8726981568552,"area_uri":12,"area":"Materials Chemistry, Ceramics and composites, Mechanics of materials","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"9cf373ba03af64ed98fb0cae7aa00958eccfbf128e6d3a2f546d6911df282866","authors_list":["Z.Y. 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Hu","oa":false,"free_access":false,"oa_link":"http://dx.doi.org/10.1016/j.ceramint.2020.06.316","outlink":"http://dx.doi.org/10.1016/j.ceramint.2020.06.316","list_link":{"address":"https://dx.doi.org/10.1016/j.ceramint.2020.06.316","isDoi":true},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Process Chemistry and Technology; Materials Chemistry; Electronic, Optical and Magnetic Materials; Surfaces, Coatings and Films; Ceramics and Composites","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":108.98195145159717,"zoomedY":-314.8726981568552,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642}],"origX":133.80089527412036,"origY":272.86254567483695,"num_readers":5,"origR":5,"x":359.4352164526389,"y":415.28489745736783,"r":61.61155548165621,"zoomedX":359.4352164526389,"zoomedY":415.28489745736783,"zoomedR":61.61155548165621},{"area_uri":13,"title":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","papers":[{"id":"102e53cc31c856e18170a1a7dbd35871d49dd80712a993aa32f717600fdbd281","relation":"OTOLOGY & NEUROTOLOGY; Cinar Z., Edizer D. T. , Yigit O., Altunay Z. O. , GÜL M., Atas A., \\"Does Calcium Dobesilate Have Therapeutic Effect on Gentamicin-induced Cochlear Nerve Ototoxicity? An Experimental Study\\", OTOLOGY & NEUROTOLOGY, cilt.41, 2020; 1531-7129; vv_1032021; av_b4b78ea8-face-41db-be48-1a8aa9300d2d; http://hdl.handle.net/20.500.12627/2022; https://doi.org/10.1097/mao.0000000000002820; 41; 10","identifier":"http://hdl.handle.net/20.500.12627/2022; https://doi.org/10.1097/mao.0000000000002820","title":"Does Calcium Dobesilate Have Therapeutic Effect on Gentamicin-induced Cochlear Nerve Ototoxicity? An Experimental Study","paper_abstract":"Hypothesis: The ototoxic effects of aminoglycosides are well known. Gentamicin carries a substantial risk of hearing loss. Gentamicin is widely used to combat life-threatening infections, despite its ototoxic effects. Calcium dobesilate is a pharmacologically active agent used to treat many disorders due to its vasoprotective and antioxidant effects. We investigated the therapeutic role of calcium dobesilate against gentamicin-induced cochlear nerve ototoxicity in an animal model. Methods: Thirty-two Sprague Dawley rats were divided into four groups: Gentamicin, Gentamicin + Calcium Dobesilate, Calcium Dobesilate, and Control. Preoperative and postoperative hearing thresholds were determined using auditory brainstem response thresholds with click and 16-kHz tone-burst stimuli. Histological analysis of the tympanic bulla specimens was performed under light and transmission electron microscopy. The histological findings were subjected to semiquantitative grading, of which the results were compared between the groups. Results: Gentamicin + Calcium Dobesilate group had, on average, 27 dB better click-evoked hearing than Gentamicin group (p 0.01). Histologically examining the Control and Calcium Dobesilate groups revealed normal ultrastructural appearances. The Gentamicin group showed the most severe histological alterations including myelin destruction, total axonal degeneration, and edema. The histological evidence of damage was significantly reduced in the Gentamicin + Calcium Dobesilate group compared with the Gentamicin group. Conclusion: Adding oral calcium dobesilate to systemic gentamicin was demonstrated to exert beneficial effects on click-evoked hearing thresholds, as supported by the histological findings.","published_in":"","year":"2020","subject_orig":"Cerrahi Tıp Bilimleri; Kulak Burun Boğaz; Dahili Tıp Bilimleri; Nöroloji; Sağlık Bilimleri; Tıp; Klinik Tıp (MED); Klinik Tıp; KLİNİK NEUROLOJİ","subject":"Cerrahi Tıp Bilimleri; Kulak Burun Boğaz; Dahili Tıp Bilimleri; Nöroloji; Sağlık Bilimleri; Tıp; Klinik Tıp (MED); Klinik Tıp; KLİNİK NEUROLOJİ","authors":"Yigit, Ozgur; Atas, Ahmet; Edizer, Deniz Tuna; Altunay, Zeynep Onerci; GÜL, MEHMET; Cinar, Zehra","link":"http://hdl.handle.net/20.500.12627/2022","oa_state":"2","url":"102e53cc31c856e18170a1a7dbd35871d49dd80712a993aa32f717600fdbd281","relevance":32,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","x":-295.86026785880813,"y":356.62839103116636,"area_uri":13,"area":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"102e53cc31c856e18170a1a7dbd35871d49dd80712a993aa32f717600fdbd281","authors_list":["Ozgur Yigit","Ahmet Atas","Deniz Tuna Edizer","Zeynep Onerci Altunay","MEHMET GÜL","Zehra Cinar"],"authors_string":"Ozgur Yigit, Ahmet Atas, Deniz Tuna Edizer, Zeynep Onerci Altunay, MEHMET GÜL, Zehra Cinar","oa":false,"free_access":false,"oa_link":"http://hdl.handle.net/20.500.12627/2022","outlink":"http://hdl.handle.net/20.500.12627/2022","list_link":{"address":"http://hdl.handle.net/20.500.12627/2022","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Cerrahi Tıp Bilimleri; Kulak Burun Boğaz; Dahili Tıp Bilimleri; Nöroloji; Sağlık Bilimleri; Tıp; Klinik Tıp (MED); Klinik Tıp; KLİNİK NEUROLOJİ","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-295.86026785880813,"zoomedY":356.62839103116636,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"5f12cefb5d98931053b71d4e6ef9c87ee2be3edb551b5e8ed3018fdee06430fd","relation":"JOURNAL OF RECEPTORS AND SIGNAL TRANSDUCTION; Ergun D. D. , Dursun S., PASTACI ÖZSOBACI N., HATIRNAZ NG Ö., NAZIROĞLU M., ÖZÇELİK D., \\"The potential protective roles of zinc, selenium and glutathione on hypoxia-induced TRPM2 channel activation in transfected HEK293 cells\\", JOURNAL OF RECEPTORS AND SIGNAL TRANSDUCTION, cilt.40, sa.6, ss.521-530, 2020; 1079-9893; vv_1032021; av_2e096561-2d60-4a8e-9808-c09a7afe8c45; http://hdl.handle.net/20.500.12627/2776; https://doi.org/10.1080/10799893.2020.1759093; 40; 6; 521; 530","identifier":"http://hdl.handle.net/20.500.12627/2776; https://doi.org/10.1080/10799893.2020.1759093","title":"The potential protective roles of zinc, selenium and glutathione on hypoxia-induced TRPM2 channel activation in transfected HEK293 cells","paper_abstract":"Hypoxia induces cell death through excessive production of reactive oxygen species (ROS) and calcium (Ca2+) influx in cells and TRPM2 cation channel is activated by oxidative stress. Zinc (Zn), selenium (Se), and glutathione (GSH) have antioxidant properties in several cells and hypoxia-induced TRPM2 channel activity, ROS and cell death may be inhibited by the Zn, Se, and GSH treatments. We investigated effects of Zn, Se, and GSH on lipid peroxidation (LPO), cell cytotoxicity and death through inhibition of TRPM2 channel activity in transfected HEK293 cells exposed to hypoxia defined as oxygen deficiency. We induced four groups as normoxia 30 and 60 min evaluated as control groups, hypoxia 30 and 60 min in the HEK293 cells. The cells were separately pre-incubated with extracellular Zn (100 mu M), Se (150 nM) and GSH (5 mM). Cytotoxicity was evaluated by lactate dehydrogenase (LDH) release and the LDH and LPO levels were significantly higher in the hypoxia-30 and 60 min-exposed cells according to normoxia 30 and 60 min groups. Furthermore, we found that the LPO and LDH were decreased in the hypoxia-exposed cells after being treated with Zn, Se, and GSH according to the hypoxia groups. Compared to the normoxia groups, the current densities of TRPM2 channel were increased in the hypoxia-exposed cells by the hypoxia applications, while the same values were decreased in the treatment of Zn, Se, and GSH according to hypoxia group. In conclusion, hypoxia-induced TRPM2 channel activity, ROS and cell death were recovered by the Se, Zn and GSH treatments.","published_in":"","year":"2020","subject_orig":"Yaşam Bilimleri; Moleküler Biyoloji ve Genetik; Yaşam Bilimleri (LIFE); HÜCRE BİYOLOJİSİ; Tıp; Sağlık Bilimleri; Temel Tıp Bilimleri; Histoloji-Embriyoloji; BİYOKİMYA VE MOLEKÜLER BİYOLOJİ; Sitogenetik; Temel Bilimler","subject":"Yaşam Bilimleri; Moleküler Biyoloji ve Genetik; Yaşam Bilimleri (LIFE); HÜCRE BİYOLOJİSİ; Tıp; Sağlık Bilimleri; Temel Tıp Bilimleri; Histoloji-Embriyoloji; BİYOKİMYA VE MOLEKÜLER BİYOLOJİ; Sitogenetik; Temel Bilimler","authors":"Dursun, Sefik; NAZIROĞLU, Mustafa; Ergun, Dilek Duzgun; HATIRNAZ NG, Özden; PASTACI ÖZSOBACI, Nural; ÖZÇELİK, Derviş","link":"http://hdl.handle.net/20.500.12627/2776","oa_state":"2","url":"5f12cefb5d98931053b71d4e6ef9c87ee2be3edb551b5e8ed3018fdee06430fd","relevance":33,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","x":-318.21299969786816,"y":566.5842292453392,"area_uri":13,"area":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"5f12cefb5d98931053b71d4e6ef9c87ee2be3edb551b5e8ed3018fdee06430fd","authors_list":["Sefik Dursun","Mustafa NAZIROĞLU","Dilek Duzgun Ergun","Özden HATIRNAZ NG","Nural PASTACI ÖZSOBACI","Derviş ÖZÇELİK"],"authors_string":"Sefik Dursun, Mustafa NAZIROĞLU, Dilek Duzgun Ergun, Özden HATIRNAZ NG, Nural PASTACI ÖZSOBACI, Derviş ÖZÇELİK","oa":false,"free_access":false,"oa_link":"http://hdl.handle.net/20.500.12627/2776","outlink":"http://hdl.handle.net/20.500.12627/2776","list_link":{"address":"http://hdl.handle.net/20.500.12627/2776","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Yaşam Bilimleri; Moleküler Biyoloji ve Genetik; Yaşam Bilimleri (LIFE); HÜCRE BİYOLOJİSİ; Tıp; Sağlık Bilimleri; Temel Tıp Bilimleri; Histoloji-Embriyoloji; BİYOKİMYA VE MOLEKÜLER BİYOLOJİ; Sitogenetik; Temel Bilimler","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-318.21299969786816,"zoomedY":566.5842292453392,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"c1b0df16a88d303e635a60eca0fd28a5174592604431721f462b8bdb474d1ee9","relation":"Journal of Dental Sciences; Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı; 1991-7902; https://doi.org/10.1016/j.jds.2020.10.010; https://hdl.handle.net/20.500.12831/3115; doi:10.1016/j.jds.2020.10.010","identifier":"https://doi.org/10.1016/j.jds.2020.10.010; https://hdl.handle.net/20.500.12831/3115","title":"Effect of various calcium hydroxide removal protocols on the dislodgement resistance of biodentine in an experimental apexification model","paper_abstract":"Background/purpose: Residual calcium hydroxide (CH) in the root canal dentine walls may influence the adhesion of tricalcium silicate-based materials. The aim of this study is to evaluate the effect of various CH removal protocols on the dislodgement resistance of biodentine from simulated immature root canals in an experimental apexification model. Materials and methods: CH was applied to 120 simulated immature root canals. The samples were divided into 12 experimental groups (n = 10) according to the applied irrigation protocols used for the removal of CH: Group 1: Sodium hypochlorite (NaOCl), Conventional needle irrigation (CNI); Group 2: NaOCl, EndoActivator; Group 3: NaOCl, XP-endo Finisher; Group 4: NaOCl- Ethylenediaminetetraacetic acid (EDTA), CNI; Group 5: NaOCl-EDTA, EndoActivator; Group 6: NaOCl-EDTA, XP-Endo Finisher; Group 7: NaOCl+etidronic acid (HEBP), CNI; Group 8: NaOCl+HEBP, EndoActivator; Group 9: NaOCl+HEBP, XP-endo Finisher; Group 10: NaOCl- Peracetic acid (PAA), CNI; Group 11: NaOCl-PAA, EndoActivator; Group 12: NaOCl-PAA, XP-endo Finisher; Control Group: CH was not applied. Biodentine was placed at the apical thirds of 130 immature root canals. Vertical loading was applied to biodentine fillings inside the dentin discs. Maximum force to dislodge the material was statistically analyzed with ANOVA. Results: The control, NaOCl+HEBP (CNI, EndoActivator, XP-endo Finisher) and NaOCl-PAA (EndoActivator, XP-endo Finisher) groups exhibited the lowest dislodgement resistance values (p < 0.001). When used CNI, irrigation with NaOCl+HEBP resulted in lower resistance to dislodgement of biodentine compared to NaOCl, and NaOCl-EDTA (p < 0.001). Conclusion: Adhesion of apical barrier materials to root canal dentine can be influenced by the irrigation protocols used for CH removal. © 2020 Association for Dental Sciences of the Republic of China ; The authors thank to Prof. Dr. B?lent Celik for his help in the statistical analysis. No funding used for this study.","published_in":"","year":"2020","subject_orig":"Biodentine; Calcium hydroxide; Etidronic acid; Immature roots; Peracetic acid","subject":"Biodentine; Calcium hydroxide; Etidronic acid; Immature roots; Peracetic acid","authors":"Ulusoy, Ö.İ.; Olcay, K.; Ulusoy, M.","link":"https://doi.org/10.1016/j.jds.2020.10.010","oa_state":"1","url":"c1b0df16a88d303e635a60eca0fd28a5174592604431721f462b8bdb474d1ee9","relevance":27,"resulttype":["Journal/newspaper article"],"doi":"https://doi.org/10.1016/j.jds.2020.10.010","cluster_labels":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","x":-504.13929263656263,"y":236.59830090585908,"area_uri":13,"area":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"c1b0df16a88d303e635a60eca0fd28a5174592604431721f462b8bdb474d1ee9","authors_list":["Ö.İ. Ulusoy","K. Olcay","M. Ulusoy"],"authors_string":"Ö.İ. Ulusoy, K. Olcay, M. Ulusoy","oa":true,"free_access":false,"oa_link":"https://doi.org/10.1016/j.jds.2020.10.010","outlink":"https://doi.org/10.1016/j.jds.2020.10.010","list_link":{"address":"https://doi.org/10.1016/j.jds.2020.10.010","isDoi":true},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Biodentine; Calcium hydroxide; Etidronic acid; Immature roots; Peracetic acid","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-504.13929263656263,"zoomedY":236.59830090585908,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"c92cbd8a74160797a6bc86d5000f244c77fe0ef0bcbe0e5e3eb58f3ac4084f44","relation":"Acta Medica Alanya; Makale - Ulusal Hakemli Dergi - Kurum Öğretim Eleman; 2587-0319; https://doi.org/10.30565/medalanya.643852; https://dergipark.org.tr/tr/download/article-file/1199337; https://hdl.handle.net/20.500.12868/1276; 4; 2; 169; 174","identifier":"https://hdl.handle.net/20.500.12868/1276; https://doi.org/10.30565/medalanya.643852; https://dergipark.org.tr/tr/download/article-file/1199337","title":"Ratlarda böbrek iskemi-reperfüzyon hasarında proflaktik kalsiyum dobesilatın etkinliği ; Efficacy of prophylactic calcium dobesilate in renal ischemia-reperfusion injury in rats","paper_abstract":"Amaç: Çalışmamızda, antioksidan ve antienflamatuvar özellikleri olduğu bilinen, kalsiyum dobesilatın deneysel böbrek iskemi-reperfüzyon hasarı (IRI) üzerindeki koruyucu etkisini araştırmayı amaçladık.Yöntemler: 24 adet erkek Wistar-Albino rat üç gruba ayrıldı; sham grubu (grup 1), iskemi-reperfüzyon grubu (grup 2) ve tedavi grubu (grup 3). İskemi-reperfüzyon işlemi öncesi Grup 3’e 10 gün boyunca 100 mg/kg/gün kalsiyum dobesilat gavaj yolu ile verildi. Sham grubu haricindeki gruplara 45 dakika iskemi ve 24 saat reperfüzyon uygulandı. Plazma üre ve kreatinin düzeyleri, eritrosit süperoksit dismutaz ve glutatyon peroksidaz enzim aktivite düzeyleri çalışıldı. Ayrıca böbrek dokusundaki iskemi-reperfüzyon hasırına ait olabilecek histopatolojik değişiklikler incelendi.Bulgular: Grup 2’de ortanca glutatyon peroksidaz ve süperoksit dismutaz enzim düzeyleri Grup 1 ve Grup 3’den daha yüksekti, ancak istatistiksel anlamlı değildi. Grup 3’de kreatinin düzeyleri Grup 1 ve Grup 2’den istatistiksel olarak anlamlı derecede daha düşüktü. Ortanca üre değerleri Grup 3’de Grup 1 ve Grup 2’den daha düşüktü ancak istatistiksel olarak anlamlı değildi. Histopatolojik incelemede; kontrol grubu ile kıyaslandığında tedavi grubunda, hücre nekrozu, tübüler epitelyal hücre düzleşmesi, sitoplazmik vakuolizasyon, tübüler lümen obstrüksiyonu ve kronik inflamasyon gibi iskemi-reperfüzyon hasarının göstergesi olan bu parametrelerin istatistiksel olarak anlamlı derecede daha az olduğu gözlendi. Sonuç: Çalışmamız, proflaktik kalsiyum dobesilatın böbrek iskemi-reperfüzyon hasarında koruyucu etkilerinin olduğunu göstermiştir. ; Aim: In this study, the objective was to investigate the protective effect of calcium dobesilate, which has antioxidant and anti-inflammatory properties, on the experimental renal ischemia-reperfusion injury (IRI). Methods: Twenty-four male Wistar-Albino rats were divided into three groups: Sham group (Group 1), ischemia-reperfusion group (Group 2), and treatment group (Group 3). Before the ischemia-reperfusion procedure, rats in Group 3 received calcium dobesilate through gavage (100mg/kg/day) for 10 days. Groups other than the sham group underwent ischemia for 45 minutes and reperfusion for 24 hours. Plasma urea and creatinine levels, erythrocyte superoxide dismutase and glutathione peroxidase enzyme activity levels were measured. In addition, histopathological changes that may be related to ischemia-reperfusion injury in the renal tissue, were investigated.Results: The median glutathione peroxidase and superoxide dismutase enzyme levels were higher in Group 2 compared to Groups 1 and 3. However, the differences were not statistically significant. The creatine levels were statistically lower in Group 3 compared to Group 1 and Group 2. The median urea levels were lower in Group 3 than in Group 1 and Group 2, but the differences were not statistically significant. The histopathological examination showed that parameters such as cellular necrosis, flattened tubular epithelial cells, cytoplasmic vacuolization, tubular lumen obstruction, and chronic inflammation, which are indicators of the ischemia-reperfusion injury, were statistically less common in the treatment group compared to the control group. Conclusion: Our study demonstrated that prophylactic calcium dobesilate had a protective effect on ischemia-reperfusion injury.","published_in":"","year":"2020","subject_orig":"Renal; iskemi-reperfüzyon; kalsiyum dobesilat; proflaktik; ischemia-reperfusion; calcium dobesilate; prophylactic","subject":"Renal; iskemi-reperfüzyon; kalsiyum dobesilat; proflaktik; ischemia-reperfusion; calcium dobesilate; prophylactic","authors":"Akkoç, Ali; Metin, Ahmet","link":"https://hdl.handle.net/20.500.12868/1276","oa_state":"1","url":"c92cbd8a74160797a6bc86d5000f244c77fe0ef0bcbe0e5e3eb58f3ac4084f44","relevance":22,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","x":-418.0813981223852,"y":496.8386540710045,"area_uri":13,"area":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"c92cbd8a74160797a6bc86d5000f244c77fe0ef0bcbe0e5e3eb58f3ac4084f44","authors_list":["Ali Akkoç","Ahmet Metin"],"authors_string":"Ali Akkoç, Ahmet Metin","oa":true,"free_access":false,"oa_link":"https://hdl.handle.net/20.500.12868/1276","outlink":"https://hdl.handle.net/20.500.12868/1276","list_link":{"address":"https://hdl.handle.net/20.500.12868/1276","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Renal; iskemi-reperfüzyon; kalsiyum dobesilat; proflaktik; ischemia-reperfusion; calcium dobesilate; prophylactic","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-418.0813981223852,"zoomedY":496.8386540710045,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"f39e272d22d7486b17c091992543410a3e052a3e30140c0a59b7a263db725d0c","relation":"http://repository.ust.hk/ir/Record/1783.1-101617; Cell Calcium, v. 86, March 2020, article number 102107; 0143-4160; https://doi.org/10.1016/j.ceca.2019.102107; http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=0143-4160&rft.volume=86&rft.issue=&rft.date=2020&rft.spage=&rft.aulast=Fine&rft.aufirst=&rft.atitle=Structural%20insights%20into%20group%20II%20TRP%20channels&rft.title=Cell%20Calcium; http://www.scopus.com/record/display.url?eid=2-s2.0-85076241399&origin=inward; http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000513184300001","identifier":"http://repository.ust.hk/ir/Record/1783.1-101617; https://doi.org/10.1016/j.ceca.2019.102107; http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=0143-4160&rft.volume=86&rft.issue=&rft.date=2020&rft.spage=&rft.aulast=Fine&rft.aufirst=&rft.atitle=Structural%20insights%20into%20group%20II%20TRP%20channels&rft.title=Cell%20Calcium; http://www.scopus.com/record/display.url?eid=2-s2.0-85076241399&origin=inward; http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000513184300001","title":"Structural insights into group II TRP channels","paper_abstract":"The seven members of the TRP channel superfamily are divided into two main groups with five members comprising group I (TRPC/V/M/N/A) and TRPML (TRP MucoLipin) and TRPP (TRP Polycystin) making up group II. Group II channels share a high sequence homology on their transmembrane domains and are distinct from group I members as they contain a large luminal/extracellular domain between transmembrane helix 1 (S1) and S2. Since 2016, there are more than ten research papers reporting various structures of group II channels by either cryo-EM or X-ray crystallography. These studies along with recent functional analysis by the other groups have considerably strengthened our knowledge on TRPML and TRPP channels. In this review, we summarize and discuss these reports providing molecular insights into the group II TRP channel family. © 2019 Elsevier Ltd","published_in":"","year":"2020","subject_orig":"Cryo-EM structure; Mucolipidosis; PKD; Polycystin; TRPML; TRPP","subject":"Cryo-EM structure; Mucolipidosis; PKD; Polycystin; TRPML; TRPP","authors":"Fine, Michael; Li, Xiaochun; Dang, Shangyu","link":"http://repository.ust.hk/ir/Record/1783.1-101617","oa_state":"2","url":"f39e272d22d7486b17c091992543410a3e052a3e30140c0a59b7a263db725d0c","relevance":45,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","x":-397.52397054813474,"y":595,"area_uri":13,"area":"Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"f39e272d22d7486b17c091992543410a3e052a3e30140c0a59b7a263db725d0c","authors_list":["Michael Fine","Xiaochun Li","Shangyu Dang"],"authors_string":"Michael Fine, Xiaochun Li, Shangyu Dang","oa":false,"free_access":false,"oa_link":"http://repository.ust.hk/ir/Record/1783.1-101617","outlink":"http://repository.ust.hk/ir/Record/1783.1-101617","list_link":{"address":"http://repository.ust.hk/ir/Record/1783.1-101617","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Cryo-EM structure; Mucolipidosis; PKD; Polycystin; TRPML; TRPP","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-397.52397054813474,"zoomedY":595,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642}],"origX":-386.76358577275175,"origY":-450.32991505067383,"num_readers":5,"origR":5,"x":193.85567249474235,"y":95.76923076923077,"r":61.61155548165621,"zoomedX":193.85567249474235,"zoomedY":95.76923076923077,"zoomedR":61.61155548165621},{"area_uri":14,"title":"Calcio por","papers":[{"id":"115a4799c17b8ef4e5ffde14e8bc63588c6ab32e4fc68d0b2c2903df137197ab","relation":"Acevedo, A. Calidad del Agua para Consumo Humano en el municipio de Trubaco. Colombia, Bolívar, 2006 Aguilar, O y Navarro, B. Evaluación de la calidad de agua para consumo humano de la comunidad de Llañucancha del distrito de Abancay (tesis). UTLA, Abancay, 2018 Álvarez, A. Salud pública y medicina preventiva. México, En manual del libro, 1991. Aurazo, G. La Contaminación en el centro del país. Tambo – Huancayo, 2004. Camacho, A. Método para la determinación de bacterias coliformes, coliformes fecales y Escherichia Coli por la Técnica de dilución en tubo múltiple. México, 2009 Campoverde, J. Análisis del efecto toxicológico que provoca el consumo humano de agua no potable, mediante la determinación de cloro libre residual en aguas tratadas de las parroquias rurales del cantón Cuenca (tesis). Universidad estatal de Cuenca. Ecuador, 2015 Cava, T. Caracterización físico – química y microbiológica de agua para consumo humano de la localidad Las Juntas del distrito Pacora – Lambayeque (tesis). Perú: UNPRG, 2016 Chemical Company, N. &.Manual del Agua su Naturaleza, Tratamiento y Aplicaciones. México: McGraw-Hill/Interamericana, 2005. Comisión Económica para América Latina y El Caribe (CEPAL). Financiamiento e inversión para el desarrollo sostenible en América Latina y el Caribe: perspectivas regionales para instrumentar el Consenso de Monterrey y el Plan de Implementación de Johannesburgo. Santiago de Chile, Chile, 2002 Contreras, L. Contaminación de Aguas Superficiales por Residuos de Plaguicida en Venezuela y oros países de Latinoamérica. Venezuela, 2013. Crites, R. Tratamiento de Aguas Residuales en Pequeñas Poblaciones. Bogotá – Colombia, 2000. Daza, A. Talleres inductivos para mejorar el nivel de percepción y el nivel de conocimiento en torno a la calidad del agua potable en el distrito de Nueva Cajamarca. (tesis). UNSM, 2017”, DIGESA. Dirección General de Salud Ambiental. En Decreto Supremo N° 031-2010 (pág. 10). Lima – Perú, 2010 Dirección General de Salud Ambiental. Reglamento de la Calidad del Agua para Consumo Humano. Lima – Perú, 2010 Fawell & Nieuwenhuijsen. Evaluación bacteriológica de agua potable suministrada dentro de las escuelas del gobierno del distrito Patna. India, 2003 Flores, L. Contaminación Bacteriológica por Coliformes Totales, Coliformes Fecales, Escherichia Coli y Salmonella SP en Aguas Termales de alcance turístico de la región San Martín . San Martín, 2016. Galarraga, E. Algunos Aspectos Relacionados con microorganismo en agua potable. Revista Politécnica de Información Técnica Científica, 1984 Gil, E. Análisis Microbiológico y Químico de las Aguas y Técnicas de Muestreo, Facultad de Ciencias Biológicas. Universidad Nacional de Trujillo. Trujillo – Perú, 2010. Hernández, C. Detección de Salmonella y Coliformes Fecales en agua de uso agrícola para la producción de melón. México, 2008. Levine, A. &. Evaluación del agua para consumo humano. (tesis). UTEA. ABANCAY, 1998. Madigan, M. (2012). Biología de los microorganismos. Madrid - España: Pearson, 2012 Marco. Prueba de la conductividad eléctrica en la evaluación fisiológica de la calidad de zemillas zeyheria tuberculosa. brazil. 2014 Mendoza, M. Impacto de la tierra en la calidad del agua de la microcuenca rio Sábalos. Costa Rica: CATIE, 1996 Metcalf. Ingeniería de aguas residuales tratamiento vertido y reutilización. En Eddy Madrid - España: Mc Graw, 1995. Orellana, J. Características del Agua Potable. UTN – FRRO. Argentina, 2005 Organización Mundial de la Salud (OMS). Manual para el desarrollo planes de seguridad del agua: Metodología pormenorizada de gestión de riesgos para proveedores de agua de consumo. Ginebra – Suiza, 2009 Organización Panamericana de la Salud (OPS), Consideraciones sobre el programa medio ambiente y salud en el Istmo Centroamericano. San José, CR, 1993 Organización Mundial de la Salud. Guía para la Calidad del Agua Potable Organización Panamericana de la Salud. Guías para la Calidad del Agua Potable. Control de la Calidad del Agua Potable en Sistemas de Abastecimiento para Pequeñas Comunidades. Lima, 1998 Organización Panamericana de la Salud. Técnicas para la Construcción de Captaciones de Aguas Superficiales. Lima, 2004 Oviedo, A. Participación Ciudadana y Espacio Público. En Segovia y Dascal (2º ed.). Santiago de Chile: Ediciones SUR, 2002 Páez, L. Validación Secundaria del Método de Filtración por Membrana para la Detección de Coliformes Totales y Escherichia Coli en muestras de agua para consumo humano analizadas en el laboratorio de salud pública del Huila. Colombia, 2008. Ramírez, L. Aplicación de la educación ambiental para desarrollar una cultura sustentable del agua en el centro poblado Los Ángeles. Moyobamba. (tesis). UNSM, 2017 Reglamento de la Calidad del Agua para Consumo Humano (D.S.061-2010-SA) Rojas et al. La pequeña cuenca como abastecedora de agua. Santiago. República Dominicana, 2002 Romero. Equidad en el Acceso del Agua en la ciudad de Lima una mirada a partir del derecho humano al agua. Lima, 2010 Santos, J. Conocimiento en cuanto a la calidad del agua potable en tres sectores específicos de Montemorelos (tesis). UAM. México, 2015 Sawyer C & Mc Carty. Química para Ingeniería Ambiental. Colombia: Mc Graw Hill. 2001 Severiche & Gonzales. Evaluación para la determinación de sulfatos en aguas por métodos turbidiometrico modificado. Cartagena – Colombia, 2012 SUNASS. Resolución de Gerencia General N°037-2004. Vargas, L. Tratamiento de aguas de consumo humano. Lima.2008 Zarza, L. La guerra del agua, un futuro distópico no tan lejano. 2009; http://hdl.handle.net/11458/3789","identifier":"http://hdl.handle.net/11458/3789","title":"Participación comunitaria para mejorar la calidad del agua para consumo humano en asentamiento humano San Genaro, distrito de Chorrillos – Lima, 2019","paper_abstract":"En el presente trabajo de investigación, tuvo como objetivo determinar la influencia de la participación comunitaria en el mejoramiento de la calidad del agua para consumo humano en asentamiento humano San Genaro, para lo cual se analizaron los parámetros microbiológicos como son coliformes totales y termotolerantes y fisicoquímicos como son color, turbiedad, cloro residual y pH del agua antes de recibir el tratamiento que involucraba a participación comunitaria. Asimismo, se diseñó y aplicó una metodología apropiada para el tratamiento con hipoclorito de calcio al 70%. En la parte metodológica, se trabajó con un solo grupo bajo un diseño pre experimental con una muestra de 40 familias de las cuales se tomaron dos muestras de agua de un litro cada, las mismas que fueron llevadas al laboratorio para su análisis microbiológicos y físico químico de acuerdo a lo estipulado en el D.S. 031 – 2010. S.A. En cuanto a los resultados encontramos que antes del tratamiento en el domicilio el agua no era apta para el consumo humano dado que los parámetros microbiológicos, superaban los límites máximos permisibles. En el pos tratamiento no se logró que dichos parámetros se reduzcan a cero como lo establece la norma pero no se logró que dichos parámetros se reduzcan a cero como lo establece la norma pero se logró un avance significativo. En cuanto a los parámetros fisicoquímicos después del tratamiento todos se encontraron bajo los límites máximos permisibles. La metodología diseñada para capacitar en el uso adecuado y tratamiento del agua a nivel domiciliario, fue determinante para que los pobladores conozcan sobre el agua, y su tratamiento. ; This research aimed to determine the influence of community participation in the improvement of water quality for human consumption in the settlement “San Genaro”, to which the microbiological parameters of total coliforms, thermotolerants and physicochemicals such as color, turbidity, chlorine residual and pH of water were analyzed before applying the treatment that involves the community participation. It was also designed and applied an appropriate methodology of 70% calcium hypochlorite treatment. In the methodological part, it has been worked with a single group by the pre-experimCnta1 design with a sample of 40 families from those who two water of one liter each one were sampled, which were taken to the laboratory for the microbiological and physical- chemical analysis as it was stipulated in D.S. 031 — 2010. S.A. Regarding the results it was found that before the treatment in households the water was not suitable for human consumption since the microbiological parameters exceeded the maximum permissible limits. The post-treatment did not reduce these parameters to zero as it is set forth in the standard, but a significant progress was made. As for the physical- chemical parameters after the treatment all the parameters were found under the maximum permissible limits. The methodology which was designed to train people in the appropriately to a given use and treatment of water in the households was decisive for the settlers to know about water and its treatment. ; Tesis ; Apa","published_in":"Universidad Nacional de San Martín - Tarapoto ; Repositorio Digital UNSM - T","year":"2020","subject_orig":"agua potable; calidad; coliformes; tratamiento; ; Drinking water; quality; coliforms; treatment","subject":"agua potable; calidad; coliformes; tratamiento; ; Drinking water; quality; coliforms; treatment","authors":"Pinedo Pérez, Ray Freddy","link":"http://hdl.handle.net/11458/3789","oa_state":"1","url":"115a4799c17b8ef4e5ffde14e8bc63588c6ab32e4fc68d0b2c2903df137197ab","relevance":41,"resulttype":["Thesis: bachelor"],"doi":"","cluster_labels":"Calcio por","x":-738.9105040968409,"y":-83.38616017384305,"area_uri":14,"area":"Calcio por","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"115a4799c17b8ef4e5ffde14e8bc63588c6ab32e4fc68d0b2c2903df137197ab","authors_list":["Ray Freddy Pinedo Pérez"],"authors_string":"Ray Freddy Pinedo Pérez","oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/11458/3789","outlink":"http://hdl.handle.net/11458/3789","list_link":{"address":"http://hdl.handle.net/11458/3789","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"agua potable; calidad; coliformes; tratamiento; ; Drinking water; quality; coliforms; treatment","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-738.9105040968409,"zoomedY":-83.38616017384305,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"c1215686e1230a90ba51dff4f74297c6dcd49f6893541e2d5e42d30d536c5901","relation":"Tesis (Ingeniera Química), Universidad San Francisco de Quito, Colegio de Ciencias e Ingenierías; Quito, Ecuador, 2019; http://repositorio.usfq.edu.ec/handle/23000/9231","identifier":"http://repositorio.usfq.edu.ec/handle/23000/9231","title":"Producción de azúcares reductores a partir de celulasa inmovilizada en Fe3O4 en presencia y ausencia de Ca2+","paper_abstract":"Cellulase immobilization on magnetic microparticles, via metal affinity immobilization, was studied in order to stablish a method to reuse the enzyme in hydrolysis, and thus decrease the production costs of reducing sugars. Calcium was selected as ligand between the solid support and cellulase, because it participates as co-factor in enzymatic activity. ; Se estudió la inmovilización por afinidad de celulasa sobre micropartículas magnéticas (MPM) con el fin de establecer un método en el que la enzima pueda ser reutilizada en la hidrólisis y así reducir los costos de producción de azúcares reductores. El calcio fue utilizado como ligando entre el soporte sólido y la celulasa, debido a que participa como co-factor en la actividad enzimática.","published_in":"","year":"2020","subject_orig":"Azúcares -- Investigaciones -- Tesis y disertaciones académicas; Celulosa; Ciencias; Química","subject":"Azúcares; Investigaciones; Tesis y disertaciones académicas; Celulosa; Ciencias; Química","authors":"Mora Rodríguez, Andrea Belén","link":"http://repositorio.usfq.edu.ec/handle/23000/9231","oa_state":"1","url":"c1215686e1230a90ba51dff4f74297c6dcd49f6893541e2d5e42d30d536c5901","relevance":42,"resulttype":["Thesis: bachelor"],"doi":"","cluster_labels":"Calcio por","x":-575.8421514828902,"y":402.0151603427383,"area_uri":14,"area":"Calcio por","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"c1215686e1230a90ba51dff4f74297c6dcd49f6893541e2d5e42d30d536c5901","authors_list":["Andrea Belén Mora Rodríguez"],"authors_string":"Andrea Belén Mora Rodríguez","oa":true,"free_access":false,"oa_link":"http://repositorio.usfq.edu.ec/handle/23000/9231","outlink":"http://repositorio.usfq.edu.ec/handle/23000/9231","list_link":{"address":"http://repositorio.usfq.edu.ec/handle/23000/9231","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Azúcares -- Investigaciones -- Tesis y disertaciones académicas; Celulosa; Ciencias; Química","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-575.8421514828902,"zoomedY":402.0151603427383,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"db6b0b25af2e99c6e582e69ae3500c4d91b075dd36387d381f1b3ac09bd01379","relation":"https://dialnet.unirioja.es/servlet/oaiart?codigo=7554111; (Revista) ISSN 1909-7700","identifier":"https://dialnet.unirioja.es/servlet/oaiart?codigo=7554111","title":"Ingesta de calcio por la dieta en una población de mujeres embarazadas ecuatorianas que viven a 2.800 metros sobre el nivel del mar","paper_abstract":"The objective of this article is to determine dietary calcium intake values in pregnant women. For this purpose, a descriptive, observational-cross-sectional study was carried out at the Provida Basic Private Hospital in Latacunga, Ecuador. A nutritional survey, previously validated, was performed with women in the third quarter of their pregnancy, who attended prenatal checkups at the hospital consultation, between September 2017 and July 2018. Statistical analysis was performed using the SPSS v.23 software; descriptive statistics were applied in the age, body mass index (BMI) and gestational age variables; and the mean, minimum and maximum standard deviations, were obtained. The frequency calculation was carried out for the dietary calcium intake and its distribution according to the age groups. As seen in the result section, with the participation of 210 pregnant women, the mean age was 30.3 ± 4.8 years, the mean gestational age was 31.2 weeks, 61.4% they were multiparous. Mean calcium intake was 562.11 ± 257.52 mg/day, the contribution of calcium coming from dairy was 1.536,90 mg/day and the minimum calcium contribution coming from complementary food was 18.93 mg/day. 90.48 % had a calcium intake lower than 900 mg/day with higher percentage in ages between 26 and 35 years old; only 9.52 % had an intake higher than 900 mg/day. Based on the results, it has been concluded that the dietary intake of calcium in pregnant women is around 562.11 ± 257.52 mg/day, data that varies according to the country or region of the population studied. It can be stated that dietary calcium intake does not reach the levels recommended by the World Health Organization (WHO) for pregnant women. The population under study has access to private health services. ; Este artigo tem o objetivo de determinar os valores de ingestão de cálcio dietário em gestantes. Para isso, foi realizado um estudo descritivo, observacional-transversal, no Hospital Privado Básico Provida de Latacunga, Equador. Foi aplicado um questionário nutricional, previamente validado, a gestantes a partir do segundo trimestre de gestação, que participaram dos pré-natais no referido hospital, entre setembro de 2017 e julho de 2018. A análise estatística foi realizada com o software SPSS versão 23; foi aplicada estatística descritiva nas variáveis idade, índice de massa corporal (IMC) e idade gestacional; foram obtidos média e desvio-padrão, mínima e máxima. Foi realizado o cálculo de frequência para os resultados de ingestão de cálcio na dieta e sua distribuição segundo grupos de idade. Na seção dos resultados, vê-se que, com a participação de 210 mulheres grávidas, a média de idade foi de 30,3 ± 4,8 anos, a média da idade gestacional foi de 31,2 semanas, 61,4 % foram multíparas. A ingestão de cálcio média foi de 562,11 ± 257,52 mg/dia, a contribuição máxima de cálcio proveniente de lácteos foi de 1.536,90 mg/dia e a mínima proveniente de alimentos complementares foi de 18,93 mg/dia. 90,48 % tiveram uma ingestão de cálcio inferior a 900 mg/dia com maior porcentagem na faixa etária de 26 a 35 anos; somente 9,52 % tiveram uma ingestão maior a 900 mg/dia. Com base nos resultados, conclui-se que a ingestão dietética de cálcio em gestantes é ao redor de 562,11 ± 257,52 mg/dia, dado que varia segundo o país ou a região da população estudada. Pode-se afirmar que a ingestão de cálcio dietário não chega aos níveis recomendados pela Organização Mundial da Saúde para as gestantes. A população de estudo tem acesso a serviços de saúde particulares. ; El objetivo del presente artículo es determinar los valores de ingesta de calcio dietario en mujeres embarazadas. Para el efecto se realizó un estudio descriptivo, observacional-transversal, en el Hospital Privado Básico Provida de Latacunga, Ecuador. Se aplicó una encuesta nutricional, previamente validada, a mujeres gestantes desde el segundo trimestre de gestación, que acudieron a los controles prenatales en la consulta del hospital, en el período de septiembre de 2017 a julio de 2018. El análisis estadístico se realizó con el software spss v.23; se aplicó estadística descriptiva en las variables edad, índice de masa corporal (imc) y edad gestacional; se obtuvieron media y desviación estándar, mínima y máxima. Se realizó el cálculo de frecuencia para los resultados de ingesta de calcio en la dieta y su distribución según grupos de edad. Como se verá en la sección de los resultados, con la participación de 210 mujeres embarazadas, la media de edad fue de 30,3 ± 4,8 años, la media de la edad gestacional fue de 31,2 semanas, 61,4 % fueron multíparas. La ingesta de calcio media fue de 562,11 ± 257,52 mg/día, el aporte máximo de calcio proveniente de lácteos fue de 1.536,90 mg/día y el aporte mínimo de calcio proveniente de alimentos complementarios fue de 18,93 mg/día. El 90,48 % tuvieron una ingesta de calcio inferior a 900 mg/día con mayor porcentaje en edades entre 26 y 35 años; solo el 9,52 % tuvieron una ingesta mayor a 900 mg/día. Con base en los resultados se ha concluido que la ingesta dietética de calcio en las mujeres embarazadas es de alrededor de 562,11 ± 257,52 mg/día, dato que varía según el país o región de la población estudiada. Se puede afirmar que la ingesta dietética de calcio no llega a los niveles recomendados por la Organización Mundial de la Salud (oms) para las mujeres gestantes. La población de estudio tiene acceso a servicios de salud privada.","published_in":"Revista Med de la Facultad de Medicina, ISSN 1909-7700, Vol. 28, Nº. 1, 2020, pags. 33-40","year":"2020","subject_orig":"not available","subject":"calcio por; de calcio; de mujeres","authors":"Durán Chávez, José Augusto; Pérez Castillo, Andrea del Rocío; Quispe Alcocer, Denys Amilcar; Guamán Flores, Wendy Yadira; Jaramillo Puga, Marilin Estefanía; Ormaza Buitrón, Diana Elizabeth","link":"https://dialnet.unirioja.es/servlet/oaiart?codigo=7554111","oa_state":"2","url":"db6b0b25af2e99c6e582e69ae3500c4d91b075dd36387d381f1b3ac09bd01379","relevance":21,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Calcio por","x":-489.67299064176615,"y":350.5836690306187,"area_uri":14,"area":"Calcio por","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"db6b0b25af2e99c6e582e69ae3500c4d91b075dd36387d381f1b3ac09bd01379","authors_list":["José Augusto Durán Chávez","Andrea del Rocío Pérez Castillo","Denys Amilcar Quispe Alcocer","Wendy Yadira Guamán Flores","Marilin Estefanía Jaramillo Puga","Diana Elizabeth Ormaza Buitrón"],"authors_string":"José Augusto Durán Chávez, Andrea del Rocío Pérez Castillo, Denys Amilcar Quispe Alcocer, Wendy Yadira Guamán Flores, Marilin Estefanía Jaramillo Puga, Diana Elizabeth Ormaza Buitrón","oa":false,"free_access":false,"oa_link":"https://dialnet.unirioja.es/servlet/oaiart?codigo=7554111","outlink":"https://dialnet.unirioja.es/servlet/oaiart?codigo=7554111","list_link":{"address":"https://dialnet.unirioja.es/servlet/oaiart?codigo=7554111","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"not available","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-489.67299064176615,"zoomedY":350.5836690306187,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642}],"origX":-601.4752154071658,"origY":-223.0708897331713,"num_readers":3,"origR":3,"x":125.56085982172416,"y":196.1751709976071,"r":52.13183405457541,"zoomedX":125.56085982172416,"zoomedY":196.1751709976071,"zoomedR":52.13183405457541},{"area_uri":15,"title":"Bitki besin elementi, Nules mandarin, Nutrition","papers":[{"id":"3e53a7492fdd5b3fb9a2a266ae19dcfa3eaa87ee98cc272d9c0ab7b4d9f3ba94","relation":"Tez; İlhan, Merve. (2020). Bazı turunçgil anaçlarının Klemantin nules mandarin çeşidinde bitki besin elementi düzeyine etkileri . (Yayınlanmamış yüksek lisans tezi). Çukurova Üniversitesi, Fen Bilimleri Enstitüsü, Bahçe Bitkileri Anabilim Dalı , Adana; http://library.cu.edu.tr/tezler/13115.pdf; https://hdl.handle.net/20.500.12605/38472","identifier":"https://hdl.handle.net/20.500.12605/38472; http://library.cu.edu.tr/tezler/13115.pdf","title":"Bazı turunçgil anaçlarının Klemantin nules mandarin çeşidinde bitki besin elementi düzeyine etkileri ; Effect of various citrus rootstocks on plant nutrition elements of Clementine nules mandarin varieties.","paper_abstract":"TEZ13115 ; Tez (Yüksek Lisans) -- Çukurova Üniversitesi, Adana, 2020. ; Kaynakça (s. 43-50) var. ; XV, 51 s. :_res. (bzs. rnk.), tablo ;_29 cm. ; Bu çalışmada, 10 farklı turunçgil anaçlarının Klemantin nules mandarin çeşidinin bitki besin elementi düzeyleri üzerine etkileri 2017, 2018 ve 2019 yıllarında üç yıl süreyle incelenmiştir. Anaçlarbitki besin elementi üzerine önemli etkilerde bulunmuşlardır. Azot içeriği en yüksek FAO-SRA, C-35 ve FA 5 anaçlarından elde edilmiştir. Carrizo ve Fhlorag 1 anaçları en yüksek Fosfor içeriğine sahip anaçlar olarak tespit edilmiştir. Fhlorag 1 anacı en yüksek potasyum ve demir içeriğine sahip anaç olmuştur. Tuzcu 891 anacı ise kalsiyum ve magnezyum içerikleri bakımından en yüksek değerleri vermiştir. Çinko içeriği en yüksek Volkameriana anacından, mangan en yüksek FA 5 anacından, bakır ise en yüksek FA 517 ve Carrizo sitranjından elde edilmiştir. ; In this study, the effects of 10 citrus rootstocks on the nutrient levels of the Clemenules clementine mandarin variety were investigated for three consecutive years in 2017,2018 and 2019. Rootstocks significantly effected plant nutrition elements concentrations. The highest nitrogen concentrations were determined in the leaves of Nules clementine grafted on FAO-SRA, C-35 citrange and FA5 rootstocks. The highest phosphorus concentrations were obtained from leaves on Carrizo citrange and Fhlorag 1 rootstocks. Leaves grafted on Fhlorag 1 had the highest potassium and iron concentrations. Calcium and magnesium concentrations were the highest in leaves grafted on Tuzcu 891 sour orange. The highest zinc concentration was determined in the leaves grafted on Volkameriana, the highest manganase on FA5 and the highest cupper concentrations were determined in the leaves of trees grafted on FA517 and Carrizo rootstocks.","published_in":"","year":"2020","subject_orig":"Turunçgil; anaç; bitki besin elementi; mandarin; Citrus; rootstok; nutrition element","subject":"Turunçgil; anaç; bitki besin elementi; mandarin; Citrus; rootstok; nutrition element","authors":"İlhan, Merve","link":"https://hdl.handle.net/20.500.12605/38472","oa_state":"1","url":"3e53a7492fdd5b3fb9a2a266ae19dcfa3eaa87ee98cc272d9c0ab7b4d9f3ba94","relevance":36,"resulttype":["Thesis: master"],"doi":"","cluster_labels":"Bitki besin elementi, Nules mandarin, Nutrition","x":-704.5998201147552,"y":-203.73457335187203,"area_uri":15,"area":"Bitki besin elementi, Nules mandarin, Nutrition","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"3e53a7492fdd5b3fb9a2a266ae19dcfa3eaa87ee98cc272d9c0ab7b4d9f3ba94","authors_list":["Merve İlhan"],"authors_string":"Merve İlhan","oa":true,"free_access":false,"oa_link":"https://hdl.handle.net/20.500.12605/38472","outlink":"https://hdl.handle.net/20.500.12605/38472","list_link":{"address":"https://hdl.handle.net/20.500.12605/38472","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Turunçgil; anaç; bitki besin elementi; mandarin; Citrus; rootstok; nutrition element","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-704.5998201147552,"zoomedY":-203.73457335187203,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"557509c87bd7348e90b6777fa218d8ade9195df950082c038f9937f89dc78b40","relation":"Tez; https://tez.yok.gov.tr/UlusalTezMerkezi/TezGoster?key=_F5QEpayDXGqGZlp9XiFtIFeHob3PBxPq8j4SGvqhzvx2laR5_vguZGaw_sQxca-; https://hdl.handle.net/20.500.12831/4552; 1; 136","identifier":"https://tez.yok.gov.tr/UlusalTezMerkezi/TezGoster?key=_F5QEpayDXGqGZlp9XiFtIFeHob3PBxPq8j4SGvqhzvx2laR5_vguZGaw_sQxca-; https://hdl.handle.net/20.500.12831/4552","title":"Sitrat nitrat yöntemiyle seryum oksit esaslı elektrolit malzemelerin hazırlanması ve karakterizasyonu ; Preparation and characterization of cerium oxide based electrolyte materials by citrate nitrate method","paper_abstract":"YÖK Tez No: 639834 ; Ülkemizde ve dünyada giderek artan enerji ihtiyacı sebebiyle alternatif enerji üretim yöntemleri giderek önem kazanmaktadır. Bu bağlamda katı oksit yakıt hücreleri (KOYH) hidrojen ve hidrokarbonların direkt olarak elektrik enerjisine çevrilmesinde yüksek verimleri, büyük kapasiteli kullanımları ve yerleşik elektrik üretim tesislerine kıyasla daha çevreci olması nedeniyle önemli bir araştırma konusu haline gelmiştir. Katı oksit yakıt hücresinde kritik öneme sahip iyonik iletkenliğin sağlandığı elektrolit yapıları üzerine birçok araştırma yapılmış ve YSZ (yitriyum katkılı zirkonya), SDC (samaryum katkılı serya), GDC (gadolinyum katkılı serya) ve LSGM (stronsiyum ve magnezyum katkılı lantan gallat) gibi yapıların 600-1000°C arasında yüksek iyonik iletkenlik gösterdiği saptanmıştır. Ancak YSZ yüksek iyonik iletkenlik sağlayabilmek için diğer elektrolitlerden daha yüksek çalışma sıcaklığı gerektirmektedir (>800°C). SDC, GDC, LSGM gibi elektrolitlerin ise nadir toprak metal oksit kullanımı nedeniyle maliyetleri yüksek olmaktadır. Bu nedenle araştırmalar alternatif elektrolit yapıları üzerine yoğunlaşmıştır. Literatürde Ca, Sr ve Mg gibi toprak alkali metallerin CeO2 içerisine katkılanması ile yüksek iyonik iletkenlik elde edilebileceği ortaya konmuştur. Ayrıca Sm'nin yanına belirli miktarlarda eklenmeleri ile performansın arttırabileceği de belirtilmiştir. Ancak yapılan çalışmalarda bu komponentlerin çözünürlük limiti, ikili katkılamalar sonucu iyonik iletkenlikleri ve hücre performansları neredeyse hiç incelenmemiştir. Bu tez çalışmasının amacı, CeO2 fazına katkılanan ve maliyetli olan nadir toprak elementlerine (Sm, Gd, Nd) alternatif olarak iyon-iletim performansında kayba uğramadan ve ekonomik açıdan daha uygun olması amaçlanarak Ca, Sr ve Mg gibi toprak alkali metallerin katkılanması yapılmıştır. CeO2 içerisindeki çözünürlükleri incelenmiş ve çözünürlük limitleri belirlenmiştir. Bu sayede olası safsızlıkların oluşmasının önüne geçilerek, çözünürlük limiti ve altındaki farklı oranlarda tekli ve ikili katkıların iyonik iletkenlikleri belirlenmiştir. Ayrıca, en yüksek iletkenlik gösteren ikili katkılı elektrolite diğer komponent farklı oranlarda eklenecek ve üçlü katkılı elektrolitler hazırlanarak iyonik iletkenlikleri incelenmiştir. Son olarak, en yüksek iyonik iletkenliği gösteren tekli, ikili ve üçlü elektrolit yapıları kullanılarak tekli hücreler hazırlanacak ve SDC yapısı ile yakıt hücresi performansları karşılaştırılmıştır. Sonuç olarak elde edilen veriler incelendiğinde literatürde farklı sentez yöntemleriyle sentezlenen SDC-20 elektrolit malzemelerine göre daha uygun maliyette daha yüksek iyonik iletkenliğin elde edildiği görülmüştür. Elektrolitlerin sentezi sitrat nitrat yakma tekniği ile gerçekleştirilmiş ve karakterizasyonu için TG/DTA, XRD, SEM, EDX kullanılmıştır. Elektrolitlerin iyonik iletkenlikleri 200-800°C arasında Empedans Spektroskopisi ile belirlenmiştir ; Due to the increasing need for energy in our country and in the world, alternative energy production methods are becoming increasingly important. In this context, solid oxide fuel cells (SOFC) have become an important research subject due to their high efficiency in the direct conversion of hydrogen and hydrocarbons into electrical energy, their large capacity use and being more environmentally friendly compared to established electricity generation facilities. Many studies have been conducted on electrolyte structures in which ionic conductivity is provided, which is critical in solid oxide fuel cell, and structures such as YSZ (yttrium doped zirconia), SDC (samarium doped seria), GDC (gadolinium doped seria) and LSGM (strontium and magnesium doped lanthanum gallate) It has been found that it shows high ionic conductivity between 600-1000 °C. However, YSZ requires a higher operating temperature than other electrolytes (>800 °C) in order to provide high ionic conductivity. Electrolytes such as SDC, GDC, LSGM have high costs due to the use of rare earth metal oxides. Therefore, research has focused on alternative electrolyte structures. It has been demonstrated in the literature that high ionic conductivity can be obtained by doped alkaline earth metals such as Ca, Sr and Mg into CeO2. It is also stated that the performance can be increased by adding certain amounts next to Sm. However, the solubility limit of these components, their ionic conductivity and cell performances as a result of double doped were almost never examined in the studies. The aim of this thesis study was to add alkaline earth metals such as Ca, Sr and Mg as an alternative to the costly rare earth elements (Sm, Gd, Nd) contributed to the CeO2 phase without losing ion-conduction performance and to be more economically viable. Their solubilities in CeO2 were examined and solubility limits were determined. In this way, the formation of possible impurities was prevented, and the ionic conductivity of single and double additives at different ratios at and below the solubility limit was determined. In addition, the other component will be added to the double-doped electrolyte, which shows the highest conductivity, in different proportions, and triple-doped electrolytes were prepared and their ionic conductivity was investigated. Finally, single cells will be prepared using single, double and triple electrolyte structures showing the highest ionic conductivity and the SDC structure and fuel cell performances will be compared. Consequently, when the data obtained were examined, it was seen that higher ionic conductivity was obtained at a more affordable cost compared to SDC-20 electrolyte materials synthesized by different synthesis methods in the literature. The synthesis of electrolytes was performed by citrate nitrate burning technique and TG / DTA, XRD, SEM, EDX were used for characterization. The ionic conductivity of the electrolytes was determined between 200-800 ° C by Impedance Spectroscopy.","published_in":"","year":"2020","subject_orig":"Kimya Mühendisliği; Chemical Engineering; Elektrolitler; Electrolytes; Kalsiyum oksit; Calcium oxide; Seryum dioksit; Cerium dioxide; Stronsiyum oksit; Strontium oxide","subject":"Kimya Mühendisliği; Chemical Engineering; Elektrolitler; Electrolytes; Kalsiyum oksit; Calcium oxide; Seryum dioksit; Cerium dioxide; Stronsiyum oksit; Strontium oxide","authors":"Ocakcı, Emine Elif","link":"https://tez.yok.gov.tr/UlusalTezMerkezi/TezGoster?key=_F5QEpayDXGqGZlp9XiFtIFeHob3PBxPq8j4SGvqhzvx2laR5_vguZGaw_sQxca-","oa_state":"1","url":"557509c87bd7348e90b6777fa218d8ade9195df950082c038f9937f89dc78b40","relevance":26,"resulttype":["Thesis: master"],"doi":"","cluster_labels":"Bitki besin elementi, Nules mandarin, Nutrition","x":-622.9909136650947,"y":121.36138106832826,"area_uri":15,"area":"Bitki besin elementi, Nules mandarin, Nutrition","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"557509c87bd7348e90b6777fa218d8ade9195df950082c038f9937f89dc78b40","authors_list":["Emine Elif Ocakcı"],"authors_string":"Emine Elif Ocakcı","oa":true,"free_access":false,"oa_link":"https://tez.yok.gov.tr/UlusalTezMerkezi/TezGoster?key=_F5QEpayDXGqGZlp9XiFtIFeHob3PBxPq8j4SGvqhzvx2laR5_vguZGaw_sQxca-","outlink":"https://tez.yok.gov.tr/UlusalTezMerkezi/TezGoster?key=_F5QEpayDXGqGZlp9XiFtIFeHob3PBxPq8j4SGvqhzvx2laR5_vguZGaw_sQxca-","list_link":{"address":"https://tez.yok.gov.tr/UlusalTezMerkezi/TezGoster?key=_F5QEpayDXGqGZlp9XiFtIFeHob3PBxPq8j4SGvqhzvx2laR5_vguZGaw_sQxca-","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Kimya Mühendisliği; Chemical Engineering; Elektrolitler; Electrolytes; Kalsiyum oksit; Calcium oxide; Seryum dioksit; Cerium dioxide; Stronsiyum oksit; Strontium oxide","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-622.9909136650947,"zoomedY":121.36138106832826,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"5dc6df078e619bcf0fd288c90fdf303a4b25c10d0c81f43e0e108912de8f7f95","relation":"Journal of Cystic Fibrosis Vol. 19, Issue 1, p. 146-152; 10.1016/j.jcf.2019.08.028; http://hdl.handle.net/1959.13/1421367; uon:37724; ISSN:1569-1993","identifier":"http://hdl.handle.net/1959.13/1421367","title":"Micronutrient intake in children with cystic fibrosis in Sydney, Australia","paper_abstract":"Background: Children with CF have been reported to consume significantly more energy-dense, nutrient-poor foods than controls where there are now concerns of inadequate micronutrient intake. There are no current or comprehensive dietary studies assessing micronutrient intake in CF children. Objectives: To evaluate micronutrient intake in children with CF compared to recommended dietary intakes (RDIs). Methods: Dietary intake of 13 micronutrients was measured in CF children aged 2-18 years and age- and sex-matched controls using a validated food frequency questionnaire (The Australian Child and Adolescent Eating Survey). Results: CF children (n = 82) consumed significantly more energy than controls (n = 82) [3142(2531-3822) kcal vs 2216(1660-2941) kcal; p <.001]. Absolute intake in CF children was significantly higher in all micronutrients except vitamin C and folate, however energy-adjusted intake was significantly lower for all micronutrients except vitamin A, sodium, calcium and phosphorous. Energy-adjusted intake in primary school CF children was significantly less than controls in 8/13 micronutrients. Overall, median intakes exceeded the RDIs for all micronutrients however CF children fell short of the RDIs for folate (26.8%), iron (15.9%) and calcium (9.8%). In pre-school, 50% of CF children and 91.7% of controls did not meet the iron RDI. High school CF and control children failed to meet RDIs for 7/13 and 9/13 micronutrients respectively. Conclusion: Increased intake of most micronutrients in CF children was largely attributed to higher energy consumption. However, micronutrient density of the diet declined with increasing age, where high school children failed to meet RDIs for most key micronutrients.","published_in":"","year":"2020","subject_orig":"CF; nutrition; diet quality; dietary intake; micronutrient","subject":"CF; nutrition; diet quality; dietary intake; micronutrient","authors":"Tham, Adrienne; Katz, Tamarah E.; Sutherland, Rosie E.; Garg, Millie; Liu, Victoria; Tong, Chai Wei; Brunner, Rebecca; Quintano, Justine; Collins, Claire; Ooi, Chee Y.","link":"http://hdl.handle.net/1959.13/1421367","oa_state":"2","url":"5dc6df078e619bcf0fd288c90fdf303a4b25c10d0c81f43e0e108912de8f7f95","relevance":38,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Bitki besin elementi, Nules mandarin, Nutrition","x":-674.917656071505,"y":32.56624047257775,"area_uri":15,"area":"Bitki besin elementi, Nules mandarin, Nutrition","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"5dc6df078e619bcf0fd288c90fdf303a4b25c10d0c81f43e0e108912de8f7f95","authors_list":["Adrienne Tham","Tamarah E. Katz","Rosie E. Sutherland","Millie Garg","Victoria Liu","Chai Wei Tong","Rebecca Brunner","Justine Quintano","Claire Collins","Chee Y. Ooi"],"authors_string":"Adrienne Tham, Tamarah E. Katz, Rosie E. Sutherland, Millie Garg, Victoria Liu, Chai Wei Tong, Rebecca Brunner, Justine Quintano, Claire Collins, Chee Y. Ooi","oa":false,"free_access":false,"oa_link":"http://hdl.handle.net/1959.13/1421367","outlink":"http://hdl.handle.net/1959.13/1421367","list_link":{"address":"http://hdl.handle.net/1959.13/1421367","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"CF; nutrition; diet quality; dietary intake; micronutrient","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-674.917656071505,"zoomedY":32.56624047257775,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"712fe2b93b01a90bb7439e9cfa6ae51903039a3a3da34885e2619376221878e9","relation":"TÜRK FARMAKOPE DERGİSİ DERGİSİ; Makale - Ulusal - Editör Denetimli Dergi; https://titck.gov.tr/storage/Archive/2020/contentFile/T%C3%BCrkFarmakopeDergisi5.Cilt4.Say%C4%B1s%C4%B1_32022b04-8fc4-4b29-95b1-0060679b090b.pdf; https://hdl.handle.net/20.500.12432/4103; Cilt: 5 • Sayı: • Yıl: 2020 ISSN: 2587 - 120X; 95; 108; ISSN: 2587 - 120X","identifier":"https://hdl.handle.net/20.500.12432/4103; https://titck.gov.tr/storage/Archive/2020/contentFile/T%C3%BCrkFarmakopeDergisi5.Cilt4.Say%C4%B1s%C4%B1_32022b04-8fc4-4b29-95b1-0060679b090b.pdf","title":"Demir Elementinin Hastalıkların Oluşumu Ve Tedavisindeki Önemi ; The Role Of Iron In The Epıdemıology And Treatment Of Dıseases","paper_abstract":"Metaller vücuttaki çok sayıdaki önemli bileşenlerin bir parçası olup özellikle biyokimyasal süreçlerde önemli rol oynamaktadırlar [1]. Demir de özellikle biyokimyasal reaksiyonlarda bir kofaktör olarak görev almakta ve oksijene karşı yüksek afinite göstermektedir [2,3]. Demir temel tepkimelerin katalizinde de kullanılan yaşam için vazgeçilmez bir elementtir. Hem deki demir ferröz (Fe+2) iyonu halinde iken non-hem demirin çoğu ferrik (Fe+3) iyon halindedir. Demir, tüm hücreler için esansiyel bir element olduğundan eksikliği durumunda anemiye neden olduğu gibi birçok sistem de etkilenmektedir. Büyüme ve gelişme geriliğine neden olabilmektedir. Demir eksikliği, ülkemizde ve tüm dünyada en çok rastlanılan beslenme kaynaklı eksikliktir. Özellikle küçük çocuklar ve kadınlar da sıklıkla görülmektedir [4]. Ayrıca ülkemizde demir eksikliği ve Demir Eksikliği Anemisi (DEA), yaş grubu olarak çocuklar üzerinde yapılan bazı araştırmalarda .2 ile .5 arasında olduğu görülmüştür [5]. Vücutta negatif demir dengesi oluştuğunda (kronik kan kayıpları, demire olan ihtiyacı artıran durumlar, emilim bozuklukları) depolardan demirin harekete geçmesi ile hemoglobin (Hb) sentezi sürdürülür. Hemoglobin sentezi için gerekli olan depo demiriyle demir sağlamadığı durumda demir eksikliği anemisi ortaya çıkar. Genellikle hastanelere başvuran hastaların fazlasının anemi hastası olduğu ve gelişmekte olan ülkelerde görülme oranının daha fazla olduğu bilinmektedir. ; Demir, önemli bir mikronutrienttir, eksikliği ve fazlalığı çeşitli hastalıkların görülmesine neden olabilir. Özellikle hücre büyümesi ve çoğalmasında, bakır ve kalsiyum gibi bazı minerallerin emiliminde, oksijen taşıma ve depolama da yaşamsal öneme sahip bir elementtir. Demir metabolizması bozuklukları insanlarda en çok görülen hastalıklardandır. Demir metabolizması bozuklukları, insanlarda en sık görülen hastalıklardandır ve diyette fakir beslenme, emilim bozuklukları ile aşırı kan kayıplarında ortaya çıkabilir. Anemi ise bir hastalık olmayıp kanın oksijen taşıma kapasitesini etkileyen çok faktörlü bir bozukluk olarak görülür. En sık görülen laboratuvar parametre bozukluklarındandır. Ülkemizde, özellikle üreme dönemindeki kadınların büyük çoğunluğunda demir eksikliği görülürken anemi görülme oranı daha düşüktür. Demirin, yeteri kadar vücuda alınamaması veya emiliminin olumsuz olarak etkilendiği durumlarda kullanılan demir preparatları farklı yollarla alınabilmektedir. Vücuttaki demir miktarına bağlı olarak oral yoldan alınımı veya parenteral demir tedavisi ile tedaviye başlanabilmektedir. Demir emiliminin kafi gelmediği durumlarda, oral demir tedavisine rağmen aneminin düzelmediği hastalarda ve oral demir tedavisini tolere edemeyen hastalarda parenteral demir tedavisi tercih edilir. Parenteral demir tedavisinde hemoglobin, demir ve ferritin gibi anemi parametrelerini kısa zamanda yükseltebilmektedir. Ayrıca semptomatik demir eksikliği anemisi olan hastalarda semptomları kısa sürede düzelterek kan transfüzyonu gereksinimini azaltmasından dolayı oral yoldan tedaviye göre üstün yanları bulunmaktadır. ; Iron is an important micronutrient, its deficiency and excess can cause various diseases. Especially in cell growth and proliferation, absorption of some minerals such as copper and calcium, oxygen transport and storage is also a vital element. Iron metabolism disorders are among the most common diseases in humans. Disturbances in iron metabolism can occur in poor diet, absorption disorders and excessive blood loss. Anemia is not a disease but a multifactorial disorder that affects the oxygen-carrying capacity of the blood. It is the most common laboratory parameter disorder. In our country, while iron deficiency is observed in the majority of women, especially in the reproductive period, the rate of anemia is lower. Iron preparations used in cases where the body cannot be taken into the body sufficiently or the absorption is negatively affected can be taken in different ways. Depending on the amount of iron in the body, oral intake or parenteral iron treatment can be started. Parenteral iron treatment is preferred in patients who cannot tolerate oral iron treatment and in patients whose iron absorption is inadequate and anemia does not improve despite oral iron treatment. Parenteral iron therapy can increase anemia parameters such as hemoglobin, iron and ferritin in a short time. In addition, in patients with symptomatic iron deficiency anemia, it has superior methods compared to oral treatment because it reduces the need for blood transfusion by improving symptoms in a short time.","published_in":"","year":"2020","subject_orig":"Anemi; Demir; Demir eksikliği. Anemia; Iron; Iron deficiency","subject":"Anemi; Demir; ; Anemia; Iron; Iron deficiency","authors":"Tuna Yıldırım, Sümeyra; Güğerçin, Reyhan Sena; Oktay, Ferit","link":"https://hdl.handle.net/20.500.12432/4103","oa_state":"1","url":"712fe2b93b01a90bb7439e9cfa6ae51903039a3a3da34885e2619376221878e9","relevance":34,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Bitki besin elementi, Nules mandarin, Nutrition","x":-762.1176339171342,"y":191.3776584613117,"area_uri":15,"area":"Bitki besin elementi, Nules mandarin, Nutrition","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"712fe2b93b01a90bb7439e9cfa6ae51903039a3a3da34885e2619376221878e9","authors_list":["Sümeyra Tuna Yıldırım","Reyhan Sena Güğerçin","Ferit Oktay"],"authors_string":"Sümeyra Tuna Yıldırım, Reyhan Sena Güğerçin, Ferit Oktay","oa":true,"free_access":false,"oa_link":"https://hdl.handle.net/20.500.12432/4103","outlink":"https://hdl.handle.net/20.500.12432/4103","list_link":{"address":"https://hdl.handle.net/20.500.12432/4103","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Anemi; Demir; Demir eksikliği. Anemia; Iron; Iron deficiency","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-762.1176339171342,"zoomedY":191.3776584613117,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642},{"id":"9ed2d9591ec262e1814880cc18da18c75620bc388e47c3a53f4bc5eccbbb684f","relation":"Spormetre Beden Eğitimi ve Spor Bilimleri Dergisi; Makale - Ulusal Hakemli Dergi - Kurum Öğretim Elemanı; Bayraktaroğlu, E. (2020). Adölesan amatör futbolcuların beslenme durumunun değerlendirilmesi. Spormetre Beden Eğitimi ve Spor Bilimleri Dergisi, 18(3), 42-51. https://doi.org/10.33689/spormetre.598251; 1304-284X; 2717-6347; https://doi.org/10.33689/spormetre.598251; https://hdl.handle.net/20.500.12511/6537; 18; 3; 42; 51; doi:10.33689/spormetre.598251","identifier":"https://hdl.handle.net/20.500.12511/6537; https://doi.org/10.33689/spormetre.598251","title":"Adölesan amatör futbolcuların beslenme durumunun değerlendirilmesi ; Evaluation of the nutrition of adolescent amateur football players","paper_abstract":"Bu çalışma; amatör olarak futbol oynayan, 14-18 yaş arası erkek adölesanların beslenme durumlarını değerlendirmek amacıyla yapılmıştır. Çalışmaya çeşitli futbol kulüplerinin alt yapı takımlarında oynayan 113 adölesan dahil edilmiştir. Bireylere ait demografik bilgiler ile beslenme alışkanlıkları, yüz yüze görüşme yöntemiyle uygulanan anket formu aracılığıyla elde edilmiştir. Ağırlık ve boy ölçümleri yapılmış, BKİ ve Z skoru hesaplanmıştır. Geriye dönük bir günlük besin tüketim kaydı alınarak, enerji ve besin öğesi alımları BeBiS programı ile hesaplanmış ve veriler istatistiksel olarak değerlendirilmiştir. Bireylerin ortalama yaşı 15,7 ± 1,3 yıl ve BKİ’si 20,56 ± 1,87 kg/m2 ’dir. Antrenman öncesinde adölesanların ,3’ü beslenmesine, ,8’i sıvı alımına dikkat ettiğini bildirmesine rağmen, ,8’i antrenman öncesi 0,5 L veya daha az miktarda sıvı tüketmektedir. Adölesanların ,1’i ara öğün yapmamakta, ,8’i ise kahvaltıyı atlamaktadır. Günlük enerji alımları ortalama 2081,94 ± 668,51 kkal olup, gereksinimlerinin sadece ,1’ini karşılamaktadır. Enerjinin günlük ortalama ,5’inin karbonhidrattan, ,2’sinin proteinden sağlandığı; lifin yeterli (1,00); kalsiyum, potasyum ve çinkonun ise yetersiz (,17; ,13; ,41) tüketildiği belirlenmiştir. Adölesanların BKİ’lerinin normal olduğu, ancak bazı önemli besin öğeleri yönünden yetersiz beslendikleri sonucuna varılmıştır. Bu yaş grubundaki sporcuların hem büyüme gelişme hem de yaptıkları spor dalına uygun beslenmeleri için erken yaşta sağlıklı beslenme bilinci geliştirilmesi, ilerleyen yaşlardaki yaralanma riskinin azaltılması ve spor performansının artırılması için önemlidir. ; This study was conducted to evaluate the nutritional status of male adolescents aged 14-18 years playing football as amateurs. A hundred and thirteen adolescents who played in the youth setups of various football clubs were included in the study. The demographic information and eating habits of the individuals were obtained through a questionnaire applied by face to face interview method. Weight and height measurements were taken and BMI and Z scores were calculated. A retrospective daily food consumption record was obtained, and energy and nutrient consumption were calculated with the BeBiS program and the data were evaluated statistically. The mean age of the subjects was 15.7 ± 1.3 years and their BMI was 20.56 ± 1.87 kg / m2 . Although 90.3% of the adolescents reported that they were paying attention to nutrition and 93.8% paying attention to fluid intake before the training, 39.8% consumed 0.5 L or less before the training. 53.1% of adolescents do not eat snacks and 24.8% skip breakfast. The average daily energy intake is 2081.94 ± 668.51 kcal and only 63.1% of its requirements are met. On average 44.5% of the daily carbohydrate energy, 16.2% of the protein is provided; fiber intake is sufficient (101.00%); it was determined that the levels of calcium, potassium and zinc were consumed inadequate (77.17%; 52.13%; 83.41%). It was concluded that the BMI of adolescents was normal but they were undernourished in terms of some important nutrients. Developing healthy nutrition awareness at an early age is important for athletes in this age group for both growth and development, as well as for proper nutrition for the sport they play. It will also reduce the risk of injury at later ages and to increase sports performance.","published_in":"","year":"2020","subject_orig":"Adölesan; Beslenme Durumu; Futbolcu; Sıvı Tüketimi; Adolescent; Fluid Consumption; Football Player; Nutrition","subject":"Adölesan; Beslenme Durumu; Futbolcu; Sıvı Tüketimi; Adolescent; Fluid Consumption; Football Player; Nutrition","authors":"Hızlı, Hilal; Bayraktaroğlu, Emre","link":"https://hdl.handle.net/20.500.12511/6537","oa_state":"1","url":"9ed2d9591ec262e1814880cc18da18c75620bc388e47c3a53f4bc5eccbbb684f","relevance":25,"resulttype":["Journal/newspaper article"],"doi":"","cluster_labels":"Bitki besin elementi, Nules mandarin, Nutrition","x":-711.0586240771385,"y":141.89321161943187,"area_uri":15,"area":"Bitki besin elementi, Nules mandarin, Nutrition","comments":[],"readers":0,"tags":[],"bkl_caption":"not available","file_hash":"hashHash","safe_id":"9ed2d9591ec262e1814880cc18da18c75620bc388e47c3a53f4bc5eccbbb684f","authors_list":["Hilal Hızlı","Emre Bayraktaroğlu"],"authors_string":"Hilal Hızlı, Emre Bayraktaroğlu","oa":true,"free_access":false,"oa_link":"https://hdl.handle.net/20.500.12511/6537","outlink":"https://hdl.handle.net/20.500.12511/6537","list_link":{"address":"https://hdl.handle.net/20.500.12511/6537","isDoi":false},"comments_for_filtering":"","num_readers":0,"internal_readers":1,"keywords":"Adölesan; Beslenme Durumu; Futbolcu; Sıvı Tüketimi; Adolescent; Fluid Consumption; Football Player; Nutrition","classification":"not available","diameter":27.692307692307693,"width":20.60884820866848,"height":27.478464278224642,"zoomedX":-711.0586240771385,"zoomedY":141.89321161943187,"zoomedWidth":20.60884820866848,"zoomedHeight":27.478464278224642}],"origX":-695.1369295691255,"origY":-56.69278365395551,"num_readers":5,"origR":5,"x":95.76923076923077,"y":269.6831434574961,"r":61.61155548165621,"zoomedX":95.76923076923077,"zoomedY":269.6831434574961,"zoomedR":61.61155548165621}]`;
+
+export const areas = JSON.parse(rawAreas);
+
const config = `{"render_list":true,"render_map":true,"scale_toolbar":false,"is_authorview":false,"content_based":true,"is_streamgraph":false,"tag":"visualization","min_height":600,"min_width":600,"max_height":1000,"multiples_size":600,"padding_articles":0,"circle_padding":0,"reference_size":650,"max_diameter_size":50,"min_diameter_size":30,"max_area_size":110,"min_area_size":50,"bubble_min_scale":1,"bubble_max_scale":1,"paper_min_scale":1,"paper_max_scale":1,"dynamic_sizing":false,"dogear_width":0.1,"dogear_height":0.1,"paper_width_factor":1.2,"paper_height_factor":1.6,"paper_readers_height_factor":0.2,"paper_metadata_height_correction":25,"is_force_areas":true,"area_force_alpha":0.02,"is_force_papers":true,"papers_force_alpha":0.1,"dynamic_force_area":false,"dynamic_force_papers":false,"preview_image_width_list":230,"preview_image_height_list":298,"preview_image_width":738,"preview_image_height":984,"zoom_factor":0.9,"transition_duration":750,"zoomout_transition":750,"mode":"search_repos","backend":"legacy","language":"eng_pubmed","hyphenation_language":"en","use_hypothesis":true,"service":"base","canonical_url":null,"intro":{"title":"What's this?","body":" This beta version of Open Knowledge Maps presents you with a topical overview of research on digital education based on 100 papers taken from BASE . BASE provides access to over 100 million documents from more than 5,200 content sources in all disciplines.
We use text similarity to create a knowledge map. The algorithm groups those papers together that have many words in common. Knowledge maps provide an instant overview of a topic by showing the main areas at a glance, and papers related to each area. This makes it possible to easily identify useful, pertinent information. Please check out our FAQs for more information.
Sign-up for our newsletter to receive occasional updates on our latest improvements.
We need your feedback! Open Knowledge Maps is a non-profit organisation run by a group of dedicated volunteers. In order to improve our free service, we need your support. Please send us your feedback to info@openknowledgemaps.org
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Use the button indicated in the exemplary screenshot to do so: ","viper_button_desc_label":"
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characters)"},{"id":"0","text":"Low metadata quality (no abstract required, which may significantly reduce map quality)"}]}]}`;
export const baseConfig = JSON.parse(config);
diff --git a/vis/test/data/covis.js b/vis/test/data/covis.js
index 92bff56bd..6079aee4f 100644
--- a/vis/test/data/covis.js
+++ b/vis/test/data/covis.js
@@ -1,3 +1,14 @@
const data = `[{"id":"https://doi.org/10.1038/nrmicro2090","title":"The spike protein of SARS-CoV — a target for vaccine and therapeutic development","authors":"Du, Lanying; He, Yuxian; Zhou, Yusen; Liu, Shuwen; Zheng, Bo-Jian; Jiang, Shibo","paper_abstract":"Severe acute respiratory syndrome (SARS) is a newly emerging infectious disease caused by a novel coronavirus, SARS-coronavirus (SARS-CoV). The SARS-CoV spike (S) protein is composed of two subunits; the S1 subunit contains a receptor-binding domain that engages with the host cell receptor angiotensin-converting enzyme 2 and the S2 subunit mediates fusion between the viral and host cell membranes. The S protein plays key parts in the induction of neutralizing-antibody and T-cell responses, as well as protective immunity, during infection with SARS-CoV. In this Review, we highlight recent advances in the development of vaccines and therapeutics based on the S protein.","published_in":"Nature Reviews Microbiology volume 7, pages226–236","year":"2020-02-09","url":"https://doi.org/10.1038/nrmicro2090","readers":0,"subject_orig":"Spike protein, vaccines","subject":"Spike protein, vaccines","oa_state":3,"link":"https://www.nature.com/articles/nrmicro2090.pdf","relevance":3,"comments":[{"comment":"The vaccination efforts are focused on the major surface protein of coronavirus called spike protein","author":"ReFigure Team"}],"tags":"Peer-reviewed","resulttype":"Review","lang_detected":"english","cluster_labels":"Antibody-dependent enhancement, Coronavirus entry, Spike protein","x":-339.1506919811518,"y":231.9285358243851,"area_uri":0,"area":"Vaccines","file_hash":"hashHash","authors_string":"Lanying Du, Yuxian He, Yusen Zhou, Shuwen Liu, Bo-Jian Zheng, Shibo Jiang","authors_short_string":"L. Du, Y. He, Y. Zhou, S. Liu, B. Zheng, S. Jiang","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1038__002fnrmicro2090","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":true,"oa_link":"https://www.nature.com/articles/nrmicro2090.pdf","outlink":"https://doi.org/10.1038/nrmicro2090","comments_for_filtering":"The vaccination efforts are focused on the major surface protein of coronavirus called spike protein ReFigure Team","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"-0.21812406","orig_y":"-0.22742917","resized":false},{"id":"https://doi.org/10.1101/2020.02.10.942136 ","title":"Structural genomics and interactomics of 2019 Wuhan novel coronavirus, 2019-nCoV, indicate evolutionary conserved functional regions of viral proteins","authors":"Cui, Hongzhu; Gao, Ziyang; Liu, Ming; Lu, Senbao; Mo, Sun; Mkandawire, Winnie; Narykov, Oleksandr; Srinivasan, Suhas; Korkin, Dmitry","paper_abstract":"During its first month, the recently emerged 2019 Wuhan novel coronavirus (2019-nCoV) has already infected many thousands of people in mainland China and worldwide and took hundreds of lives. However, the swiftly spreading virus also caused an unprecedentedly rapid response from the research community facing the unknown health challenge of potentially enormous proportions. Unfortunately, the experimental research to understand the molecular mechanisms behind the viral infection and to design a vaccine or antivirals is costly and takes months to develop. To expedite the advancement of our knowledge we leverage the data about the related coronaviruses that is readily available in public databases, and integrate these data into a single computational pipeline. As a result, we provide a comprehensive structural genomics and interactomics road-maps of 2019-nCoV and use these information to infer the possible functional differences and similarities with the related SARS coronavirus. All data are made publicly available to the research community at http://korkinlab.org/wuhan","published_in":"bioRxiv","year":"2020-02-14","readers":0,"subject_orig":"Viral proteins, structural, genomic, computational modeling","subject":"Viral proteins, structural, genomic, computational modeling","oa_state":1,"link":"https://www.biorxiv.org/content/10.1101/2020.02.10.942136v1.full.pdf","relevance":4,"comments":[],"tags":"reproducible","resulttype":"Preprint","lang_detected":"english","cluster_labels":"Chain reaction, Clinical presentations, Coronavirus 2019-ncov","x":574.362845422091,"y":366.2684236396142,"area_uri":1,"area":"Viral biology","file_hash":"hashHash","authors_string":"Hongzhu Cui, Ziyang Gao, Ming Liu, Senbao Lu, Sun Mo, Winnie Mkandawire, Oleksandr Narykov, Suhas Srinivasan, Dmitry Korkin","authors_short_string":"H. Cui, Z. Gao, M. Liu, S. Lu, S. Mo, W. Mkandawire, O. Narykov, S. Srinivasan, D. Korkin","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1101__002f2020__002e02__002e10__002e942136-","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://www.biorxiv.org/content/10.1101/2020.02.10.942136v1.full.pdf","outlink":"https://doi.org/10.1101/2020.02.10.942136 ","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.34249028","orig_y":"-0.08529352","resized":false},{"id":"https://refigure.org/collections/item/ecd1dab0-56a5-11ea-8c54-9323bc73fc6b/","title":"Gastrointestinal system as a route of infection and transmission of 2019 coronavirus","authors":"Goyal, Girija","paper_abstract":"Due to the high number of preprints being submitted on coronavirus, concerns have been raised about whether these findings are truly actionable.","published_in":"ReFigure","year":"2020-02-23","url":"https://refigure.org/collections/item/ecd1dab0-56a5-11ea-8c54-9323bc73fc6b/","readers":0,"subject_orig":"ileum, oral, gastrointestinal, receptor, ACE2, gene expression, viral entry","subject":"ileum, oral, gastrointestinal, receptor, ACE2, gene expression, viral entry","oa_state":3,"link":"","relevance":6,"comments":[{"comment":"Compilation of modeling and in vitro studies","author":"ReFigure Team"}],"tags":"Collection, reproducible","resulttype":"ReFigure","lang_detected":"english","cluster_labels":"Antibody-dependent enhancement, Coronavirus entry, Spike protein","x":577.7883194976532,"y":246.00063969919404,"area_uri":2,"area":"Host biology and clinical findings","file_hash":"hashHash","authors_string":"Girija Goyal","authors_short_string":"G. Goyal","safe_id":"https__003a__002f__002frefigure__002eorg__002fcollections__002fitem__002fecd1dab0__002d56a5__002d11ea__002d8c54__002d9323bc73fc6b__002f","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":true,"oa_link":"","outlink":"https://refigure.org/collections/item/ecd1dab0-56a5-11ea-8c54-9323bc73fc6b/","comments_for_filtering":"Compilation of modeling and in vitro studies ReFigure Team","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.34459246","orig_y":"-0.21254046","resized":false},{"id":"https://doi.org/10.1038/s41421-020-0153-3","title":"Network-based drug repurposing for novel coronavirus 2019-nCoV/SARS-CoV-2","authors":"Zhou, Yadi; Hou, Yuan; Shen, Jiayu; Huang, Yin; Martin, William; Cheng, Feixiong","paper_abstract":"Human coronaviruses (HCoVs), including severe acute respiratory syndrome coronavirus (SARS-CoV) and 2019 novel coronavirus (2019-nCoV, also known as SARS-CoV-2), lead global epidemics with high morbidity and mortality. However, there are currently no effective drugs targeting 2019-nCoV/SARS-CoV-2. Drug repurposing, representing as an effective drug discovery strategy from existing drugs, could shorten the time and reduce the cost compared to de novo drug discovery. In this study, we present an integrative, antiviral drug repurposing methodology implementing a systems pharmacology-based network medicine platform, quantifying the interplay between the HCoV–host interactome and drug targets in the human protein–protein interaction network. Phylogenetic analyses of 15 HCoV whole genomes reveal that 2019-nCoV/SARS-CoV-2 shares the highest nucleotide sequence identity with SARS-CoV (79.7%). Specifically, the envelope and nucleocapsid proteins of 2019-nCoV/SARS-CoV-2 are two evolutionarily conserved regions, having the sequence identities of 96% and 89.6%, respectively, compared to SARS-CoV. Using network proximity analyses of drug targets and HCoV–host interactions in the human interactome, we prioritize 16 potential anti-HCoV repurposable drugs (e.g., melatonin, mercaptopurine, and sirolimus) that are further validated by enrichment analyses of drug-gene signatures and HCoV-induced transcriptomics data in human cell lines. We further identify three potential drug combinations (e.g., sirolimus plus dactinomycin, mercaptopurine plus melatonin, and toremifene plus emodin) c aptured by the “Complementary Exposure” pattern: the targets of the drugs both hit the HCoV–host subnetwork, but target separate neighborhoods in the human interactome network. In summary, this study offers powerful network-based methodologies for rapid identification of candidate repurposable drugs and potential drug combinations targeting 2019-nCoV/SARS-CoV-2.","published_in":"Cell Discovery","year":"2020-03-16","url":"https://doi.org/10.1038/s41421-020-0153-3","readers":0,"subject_orig":"Drug repurposing, computational modeling and prediction","subject":"Drug repurposing, computational modeling and prediction","oa_state":1,"link":"https://www.nature.com/articles/s41421-020-0153-3.pdf?origin=ppub","relevance":7,"comments":[{"comment":"A thoughful study identifying 16 drug combinations","author":"ReFigure Team"}],"tags":",","resulttype":"Journal Article","lang_detected":"english","cluster_labels":"Drug repurposing, Drug interaction, Interaction Checker","x":-474.7881599955948,"y":177.20097378404395,"area_uri":3,"area":"Therapeutics","file_hash":"hashHash","authors_string":"Yadi Zhou, Yuan Hou, Jiayu Shen, Yin Huang, William Martin, Feixiong Cheng","authors_short_string":"Y. Zhou, Y. Hou, J. Shen, Y. Huang, W. Martin, F. Cheng","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1038__002fs41421__002d020__002d0153__002d3","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://www.nature.com/articles/s41421-020-0153-3.pdf?origin=ppub","outlink":"https://doi.org/10.1038/s41421-020-0153-3","comments_for_filtering":"A thoughful study identifying 16 drug combinations ReFigure Team","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"-0.30136345","orig_y":"-0.28533258","resized":false},{"id":"https://doi.org/10.1186/s41182-020-00201-2","title":"Coronavirus disease-2019: is fever an adequate screening for the returning travelers?","authors":"Bwire, George M.; Paulo, Linda S.","paper_abstract":"On Thursday, 30 January 2020, World Health Organization declared Coronavirus disease-2019 (COVID-2019) a Public Health Emergency of International Concern. Since its identification in late December 2019 in Wuhan, Hubei Province, People’s Republic of China, the number of cases imported into other countries is increasing, and the epidemiological map is changing rapidly. On the other hand, body temperature screening (fever) is the major test performed at points of entry, i.e., airports, in the returning travelers in most of the countries with limited resources. However, the recent report on asymptomatic contact transmission of COVID-19 and travelers who passed the symptoms-based screening and tested positive for COVID-19 using reverse transcription polymerase chain reaction (RT-PCR) challenges this approach as body temperature screening may miss travelers incubating the disease or travelers concealing fever during travel. On this note, travel restrictions to and from high risk areas and/or 14 days quarantine of travelers coming from high risk areas are recommended to prevent possible importation of COVID-19. Currently, RT-PCR is a reliable test in detecting both symptomatic and asymptomatic COVID-19.","published_in":"Tropical Medicine and Health","year":"2020-03-09","url":"https://doi.org/10.1186/s41182-020-00201-2","readers":0,"subject_orig":"Screening, fever","subject":"Screening, fever","oa_state":1,"link":"https://tropmedhealth.biomedcentral.com/track/pdf/10.1186/s41182-020-00201-2","relevance":8,"comments":[],"tags":"Perspective","resulttype":"Journal Article","lang_detected":"english","cluster_labels":"Chain reaction, Clinical presentations, Coronavirus 2019-ncov","x":151.88768770961283,"y":795.0828627048768,"area_uri":4,"area":"Epidemiology","file_hash":"hashHash","authors_string":"George M. Bwire, Linda S. Paulo","authors_short_string":"G. Bwire, L. Paulo","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1186__002fs41182__002d020__002d00201__002d2","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://tropmedhealth.biomedcentral.com/track/pdf/10.1186/s41182-020-00201-2","outlink":"https://doi.org/10.1186/s41182-020-00201-2","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.08322140","orig_y":"0.36840508","resized":false},{"id":"https://doi.org/10.1186/s12942-020-00202-8","title":"Geographical tracking and mapping of coronavirus disease COVID-19/severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) epidemic and associated events around the world: how 21st century GIS technologies are supporting the global fight against outbreaks and epidemics","authors":"Kamel Boulos, Maged N.; Geraghty, Estella M.","paper_abstract":"In December 2019, a new virus (initially called ‘Novel Coronavirus 2019-nCoV’ and later renamed to SARS-CoV-2) causing severe acute respiratory syndrome (coronavirus disease COVID-19) emerged in Wuhan, Hubei Province, China, and rapidly spread to other parts of China and other countries around the world, despite China’s massive efforts to contain the disease within Hubei. As with the original SARS-CoV epidemic of 2002/2003 and with seasonal influenza, geographic information systems and methods, including, among other application possibilities, online real-or near-real-time mapping of disease cases and of social media reactions to disease spread, predictive risk mapping using population travel data, and tracing and mapping super-spreader trajectories and contacts across space and time, are proving indispensable for timely and effective epidemic monitoring and response. This paper offers pointers to, and describes, a range of practical online/mobile GIS and mapping dashboards and applications for tracking the 2019/2020 coronavirus epidemic and associated events as they unfold around the world. Some of these dashboards and applications are receiving data updates in near-real-time (at the time of writing), and one of them is meant for individual users (in China) to check if the app user has had any close contact with a person confirmed or suspected to have been infected with SARS-CoV-2 in the recent past. We also discuss additional ways GIS can support the fight against infectious disease outbreaks and epidemics.","published_in":"International Journal of Health Geographics","year":"2020-03-11","url":"https://doi.org/10.1186/s12942-020-00202-8","readers":0,"subject_orig":"Tracking technologies, GIS, geographic","subject":"Tracking technologies, GIS, geographic","oa_state":1,"link":"https://ij-healthgeographics.biomedcentral.com/track/pdf/10.1186/s12942-020-00202-8","relevance":9,"comments":[],"tags":"Peer-reviewed","resulttype":"Review","lang_detected":"english","cluster_labels":"Chain reaction, Clinical presentations, Coronavirus 2019-ncov","x":435.76847848985966,"y":576.1405833198323,"area_uri":4,"area":"Epidemiology","file_hash":"hashHash","authors_string":"Maged N. Kamel Boulos, Estella M. Geraghty","authors_short_string":"M. Kamel Boulos, E. Geraghty","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1186__002fs12942__002d020__002d00202__002d8","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://ij-healthgeographics.biomedcentral.com/track/pdf/10.1186/s12942-020-00202-8","outlink":"https://doi.org/10.1186/s12942-020-00202-8","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.25743627","orig_y":"0.13675755","resized":false},{"id":"https://doi.org/10.1186/s13054-020-2833-7","title":"Host susceptibility to severe COVID-19 and establishment of a host risk score: findings of 487 cases outside Wuhan","authors":"Shi, Yu; Yu, Xia; Zhao, Hong; Wang, Hao; Zhao, Ruihong; Sheng, Jifang","paper_abstract":"","published_in":"Critical Care","year":"2020-03-18","url":"https://doi.org/10.1186/s13054-020-2833-7","readers":0,"subject_orig":"symptoms, hypertension, age, susceptibility, severe cases","subject":"symptoms, hypertension, age, susceptibility, severe cases","oa_state":1,"link":"https://ccforum.biomedcentral.com/track/pdf/10.1186/s13054-020-2833-7","relevance":10,"comments":[{"comment":"A large number of patients was studied in this report","author":"ReFigure Team"}],"tags":"Peer-reviewed","resulttype":"Journal Article","lang_detected":"english","cluster_labels":"Coagulation, Coagulopathy, Clotting, Blood clot, Frequent neurologic, Covid19 patients","x":-137.0487480995272,"y":826.4977239801246,"area_uri":2,"area":"Host biology and clinical findings","file_hash":"hashHash","authors_string":"Yu Shi, Xia Yu, Hong Zhao, Hao Wang, Ruihong Zhao, Jifang Sheng","authors_short_string":"Y. Shi, X. Yu, H. Zhao, H. Wang, R. Zhao, J. Sheng","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1186__002fs13054__002d020__002d2833__002d7","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://ccforum.biomedcentral.com/track/pdf/10.1186/s13054-020-2833-7","outlink":"https://doi.org/10.1186/s13054-020-2833-7","comments_for_filtering":"A large number of patients was studied in this report ReFigure Team","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"-0.09409607","orig_y":"0.40164295","resized":false},{"id":"https://doi.org/10.1038/s41413-020-0084-5","title":"Long-term bone and lung consequences associated with hospital-acquired severe acute respiratory syndrome: a 15-year follow-up from a prospective cohort study","authors":"Zhang, Peixun; Li, Jia; Liu, Huixin; Han, Na; Ju, Jiabao; Kou, Yuhui; Chen, Lei; Jiang, Mengxi; Pan, Feng; Zheng, Yali; Gao, Zhancheng; Jiang, Baoguo","paper_abstract":"The most severe sequelae after rehabilitation from SARS are femoral head necrosis and pulmonary fibrosis. We performed a 15-year follow-up on the lung and bone conditions of SARS patients. We evaluated the recovery from lung damage and femoral head necrosis in an observational cohort study of SARS patients using pulmonary CT scans, hip joint MRI examinations, pulmonary function tests and hip joint function questionnaires. Eighty medical staff contracted SARS in 2003. Two patients died of SARS, and 78 were enrolled in this study from August 2003 to March 2018. Seventy-one patients completed the 15-year follow-up. The percentage of pulmonary lesions on CT scans diminished from 2003 (9.40 ± 7.83)% to 2004 (3.20 ± 4.78)% (P < 0.001) and remained stable thereafter until 2018 (4.60 ± 6.37)%. Between 2006 and 2018, the proportion of patients with interstitial changes who had improved pulmonary function was lower than that of patients without lesions, as demonstrated by the one-second ratio (FEV1/FVC%, t = 2.21, P = 0.04) and mid-flow of maximum expiration (FEF25%–75%, t = 2.76, P = 0.01). The volume of femoral head necrosis decreased significantly from 2003 (38.83 ± 21.01)% to 2005 (30.38 ± 20.23)% (P = 0.000 2), then declined slowly from 2005 to 2013 (28.99 ± 20.59)% and plateaued until 2018 (25.52 ± 15.51)%. Pulmonary interstitial damage and functional decline caused by SARS mostly recovered, with a greater extent of recovery within 2 years after rehabilitation. Femoral head necrosis induced by large doses of steroid pulse therapy in SARS patients without lesions, as demonstrated by the one-second ratio (FEV1/FVC%, t = 2.21, P = 0.04) and mid-flow of maximum expiration (FEF25%–75%, t = 2.76, P = 0.01). The volume of femoral head necrosis decreased significantly from 2003 (38.83 ± 21.01)% to 2005 (30.38 ± 20.23)% (P = 0.000 2), then declined slowly from 2005 to 2013 (28.99 ± 20.59)% and plateaued until 2018 (25.52 ± 15.51)%. Pulmonary interstitial damage and functional decline caused by SARS mostly recovered, with a greater extent of recovery within 2 years after rehabilitation. Femoral head necrosis induced by large doses of steroid pulse therapy in SARS patients was not progressive and was partially reversible.","published_in":"Bone Research","year":"2020-02-14","url":"https://doi.org/10.1038/s41413-020-0084-5","readers":0,"subject_orig":"Long term effects, Bone, lung","subject":"Long term effects, Bone, lung","oa_state":1,"link":"https://www.nature.com/articles/s41413-020-0084-5.pdf?origin=ppub","relevance":11,"comments":[{"comment":"ARDS is the cause of hospitalizations for many respiratory infections. This studies long term clinical impact.","author":"ReFigure Team"}],"tags":"Peer-reviewed","resulttype":"Journal Article","lang_detected":"english","cluster_labels":"Acute respiratory syndrome, Clinical characteristics, Cohort study","x":93.73484804884788,"y":874.0759433593549,"area_uri":2,"area":"Host biology and clinical findings","file_hash":"hashHash","authors_string":"Peixun Zhang, Jia Li, Huixin Liu, Na Han, Jiabao Ju, Yuhui Kou, Lei Chen, Mengxi Jiang, Feng Pan, Yali Zheng, Zhancheng Gao, Baoguo Jiang","authors_short_string":"P. Zhang, J. Li, H. Liu, N. Han, J. Ju, Y. Kou, L. Chen, M. Jiang, F. Pan, Y. Zheng, Z. Gao, B. Jiang","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1038__002fs41413__002d020__002d0084__002d5","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://www.nature.com/articles/s41413-020-0084-5.pdf?origin=ppub","outlink":"https://doi.org/10.1038/s41413-020-0084-5","comments_for_filtering":"ARDS is the cause of hospitalizations for many respiratory infections. This studies long term clinical impact. ReFigure Team","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.04753357","orig_y":"0.45198214","resized":false},{"id":"https://doi.org/10.1038/s41598-020-60992-6","title":"High resolution metagenomic characterization of complex infectomes in paediatric acute respiratory infection","authors":"Li, Ci-Xiu; Li, Wei; Zhou, Jun; Zhang, Bing; Feng, Yan; Xu, Chang-Ping; Lu, Yi-Yu; Holmes, Edward C.; Shi, Mang","paper_abstract":"The diversity of pathogens associated with acute respiratory infection (ARI) makes diagnosis challenging. Traditional pathogen screening tests have a limited detection range and provide little additional information. We used total RNA sequencing (“meta-transcriptomics”) to reveal the full spectrum of microbes associated with paediatric ARI. Throat swabs were collected from 48 paediatric ARI patients and 7 healthy controls. Samples were subjected to meta-transcriptomics to determine the presence and abundance of viral, bacterial, and eukaryotic pathogens, and to reveal mixed infections, pathogen genotypes/subtypes, evolutionary origins, epidemiological history, and antimicrobial resistance. We identified 11 RNA viruses, 4 DNA viruses, 4 species of bacteria, and 1 fungus. While most are known to cause ARIs, others, such as echovirus 6, are rarely associated with respiratory disease. Co-infection of viruses and bacteria and of multiple viruses were commonplace (9/48), with one patient harboring 5 different pathogens, and genome sequence data revealed large intra-species diversity. Expressed resistance against eight classes of antibiotic was detected, with those for MLS, Bla, Tet, Phe at relatively high abundance. In summary, we used a simple total RNA sequencing approach to reveal the complex polymicrobial infectome in ARI. This provided comprehensive and clinically informative information relevant to understanding respiratory disease.","published_in":"Scientific Reports","year":"2020-03-03","url":"https://doi.org/10.1038/s41598-020-60992-6","readers":0,"subject_orig":"Coinfection, acute respiratory distress, ARDS, pneumonia","subject":"Coinfection, acute respiratory distress, ARDS, pneumonia","oa_state":1,"link":"https://www.nature.com/articles/s41598-020-60992-6.pdf","relevance":12,"comments":[],"tags":"Peer-reviewed","resulttype":"Journal Article","lang_detected":"english","cluster_labels":"Acute respiratory syndrome, Clinical characteristics, Cohort study","x":573.0471816714372,"y":446.09313466894724,"area_uri":2,"area":"Host biology and clinical findings","file_hash":"hashHash","authors_string":"Ci-Xiu Li, Wei Li, Jun Zhou, Bing Zhang, Yan Feng, Chang-Ping Xu, Yi-Yu Lu, Edward C. Holmes, Mang Shi","authors_short_string":"C. Li, W. Li, J. Zhou, B. Zhang, Y. Feng, C. Xu, Y. Lu, E. Holmes, M. Shi","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1038__002fs41598__002d020__002d60992__002d6","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://www.nature.com/articles/s41598-020-60992-6.pdf","outlink":"https://doi.org/10.1038/s41598-020-60992-6","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.34168287","orig_y":"-0.00083657","resized":false},{"id":"https://doi.org/10.1038/s41598-020-61133-9","title":"Topological dynamics of the 2015 South Korea MERS-CoV spread-on-contact networks","authors":"Yang, Chang Hoon; Jung, Hyejin","paper_abstract":"Network analysis to examine infectious contact relations provides an important means to uncover the topologies of individual infectious contact networks. This study aims to investigate the spread of diseases among individuals over contact networks by exploring the 2015 Middle East Respiratory Syndrome (MERS) outbreak in Korea. We present several distinct features of MERS transmission by employing a comprehensive approach in network research to examine both the traced relationship matrix of infected individuals and their bipartite transmission routes among healthcare facilities visited for treatment. The results indicate that a few super-spreaders were more likely to hold certain structural advantages by linking to an exceptional number of other individuals, causing several ongoing transmission events in neighbourhoods without the aid of any intermediary. Thus, the infectious contact network exhibited small-world dynamics characterised by locally clustered contacts exposed to transmission paths via short path lengths. In addition, nosocomial infection analysis shows the pattern of a common-source outbreak followed by secondary person-to-person transmission of the disease. Based on the results, we suggest policy implications related to the redesign of prevention and control strategies against the spread of epidemics.","published_in":"Scientific Reports","year":"2020-03-09","url":"https://doi.org/10.1038/s41598-020-61133-9","readers":0,"subject_orig":"South Korea, Mers, incidence, spread","subject":"South Korea, Mers, incidence, spread","oa_state":1,"link":"https://www.nature.com/articles/s41598-020-61133-9.pdf","relevance":13,"comments":[],"tags":"Peer-reviewed","resulttype":"Journal Article","lang_detected":"english","cluster_labels":"Chain reaction, Clinical presentations, Coronavirus 2019-ncov","x":620.5243748961177,"y":674.6778425980848,"area_uri":4,"area":"Epidemiology","file_hash":"hashHash","authors_string":"Chang Hoon Yang, Hyejin Jung","authors_short_string":"C. Yang, H. Jung","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1038__002fs41598__002d020__002d61133__002d9","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://www.nature.com/articles/s41598-020-61133-9.pdf","outlink":"https://doi.org/10.1038/s41598-020-61133-9","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.37081916","orig_y":"0.24101294","resized":false},{"id":"https://doi.org/10.1186/s13613-020-00650-2","title":"Lower mortality of COVID-19 by early recognition and intervention: experience from Jiangsu Province","authors":"Sun, Qin; Qiu, Haibo; Huang, Mao; Yang, Yi.","paper_abstract":"","published_in":"Annals of Intensive Care","year":"2020-03-18","url":"https://doi.org/10.1186/s13613-020-00650-2","readers":0,"subject_orig":"Intensive Care, ICU","subject":"Intensive Care, ICU","oa_state":1,"link":"https://annalsofintensivecare.springeropen.com/track/pdf/10.1186/s13613-020-00650-2","relevance":14,"comments":[],"tags":"Peer-reviewed","resulttype":"Journal Article","lang_detected":"english","cluster_labels":"Coagulation, Coagulopathy, Clotting, Blood clot, Frequent neurologic, Covid19 patients","x":-364.0858450233869,"y":835.2672378811319,"area_uri":2,"area":"Host biology and clinical findings","file_hash":"hashHash","authors_string":"Qin Sun, Haibo Qiu, Mao Huang, Yi. Yang","authors_short_string":"Q. Sun, H. Qiu, M. Huang, Y. Yang","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1186__002fs13613__002d020__002d00650__002d2","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://annalsofintensivecare.springeropen.com/track/pdf/10.1186/s13613-020-00650-2","outlink":"https://doi.org/10.1186/s13613-020-00650-2","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"-0.23342652","orig_y":"0.41092136","resized":false},{"id":"https://doi.org/10.1038/s41598-020-61094-z","title":"Calprotectin, a new biomarker for diagnosis of acute respiratory infections","authors":"Havelka, Aleksandra; Sejersen, Kristina; Venge, Per; Pauksens, Karlis; Larsson, Anders","paper_abstract":"Respiratory tract infections require early diagnosis and adequate treatment. With the antibiotic overuse and increment in antibiotic resistance there is an increased need to accurately distinguish between bacterial and viral infections. We investigated the diagnostic performance of calprotectin in respiratory tract infections and compared it with the performance of heparin binding protein (HBP) and procalcitonin (PCT). Biomarkers were analyzed in patients with viral respiratory infections and patients with bacterial pneumonia, mycoplasma pneumonia and streptococcal tonsillitis (n = 135). Results were compared with values obtained from 144 healthy controls. All biomarkers were elevated in bacterial and viral infections compared to healthy controls. Calprotectin was significantly increased in patients with bacterial infections; bacterial pneumonia, mycoplasma pneumonia and streptococcal tonsillitis compared with viral infections. PCT was significantly elevated in patients with bacterial pneumonia compared to viral infections but not in streptococcal tonsillitis or mycoplasma caused infections. HBP was not able to distinguish between bacterial and viral causes of infections. The overall clinical performance of calprotectin in the distinction between bacterial and viral respiratory infections, including mycoplasma was greater than performance of PCT and HBP. Rapid determination of calprotectin may improve the management of respiratory tract infections and allow more precise diagnosis and selective use of antibiotics.","published_in":"Scientific Reports","year":"2020-03-06","url":"https://doi.org/10.1038/s41598-020-61094-z","readers":0,"subject_orig":"Biomarker","subject":"Biomarker","oa_state":1,"link":"https://www.nature.com/articles/s41598-020-61094-z.pdf","relevance":15,"comments":[],"tags":"Peer-reviewed","resulttype":"Journal Article","lang_detected":"english","cluster_labels":"Acute respiratory syndrome, Clinical characteristics, Cohort study","x":463.8726733062976,"y":340.5961492564263,"area_uri":2,"area":"Host biology and clinical findings","file_hash":"hashHash","authors_string":"Aleksandra Havelka, Kristina Sejersen, Per Venge, Karlis Pauksens, Anders Larsson","authors_short_string":"A. Havelka, K. Sejersen, P. Venge, K. Pauksens, A. Larsson","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1038__002fs41598__002d020__002d61094__002dz","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://www.nature.com/articles/s41598-020-61094-z.pdf","outlink":"https://doi.org/10.1038/s41598-020-61094-z","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.27468354","orig_y":"-0.11245556","resized":false},{"id":"https://doi.org/10.1080/21505594.2020.1726594","title":"Orchestrated efforts on host network hijacking: Processes governing virus replication","authors":"Dai, Xiaofeng; Hakizimana, Olivier; Zhang, Xuanhao; Chandra Kaushik, Aman; Zhang, Jianying","paper_abstract":"With the high pervasiveness of viral diseases, the battle against viruses has never ceased. Here we discuss five cellular processes, namely “autophagy”, “programmed cell death”, “immune response”, “cell cycle alteration”, and “lipid metabolic reprogramming”, that considerably guide viral replication after host infection in an orchestrated manner. On viral infection, “autophagy” and “programmed cell death” are two dynamically synchronized cell survival programs; “immune response” is a cell defense program typically suppressed by viruses; “cell cycle alteration” and “lipid metabolic reprogramming” are two altered cell housekeeping programs tunable in both directions. We emphasize on their functionalities in modulating viral replication, strategies viruses have evolved to tune these processes for their benefit, and how these processes orchestrate and govern cell fate upon viral infection. Understanding how viruses hijack host networks has both academic and industrial values in providing insights toward therapeutic strategy design for viral disease control, offering useful information in applications that aim to use viral vectors to improve human health such as gene therapy, and providing guidelines to maximize viral particle yield for improved vaccine production at a reduced cost.","published_in":"Virulence","year":"2020-02-16","url":"https://doi.org/10.1080/21505594.2020.1726594","readers":0,"subject_orig":"GO Terms, omics","subject":"GO Terms, omics","oa_state":1,"link":"https://www.tandfonline.com/doi/abs/10.1080/21505594.2020.1726594?needAccess=true","relevance":16,"comments":[],"tags":"Peer-reviewed","resulttype":"Review","lang_detected":"english","cluster_labels":"Antibody-dependent enhancement, Coronavirus entry, Spike protein","x":175.47895429381947,"y":139.6616272325476,"area_uri":2,"area":"Host biology and clinical findings","file_hash":"hashHash","authors_string":"Xiaofeng Dai, Olivier Hakizimana, Xuanhao Zhang, Aman Chandra Kaushik, Jianying Zhang","authors_short_string":"X. Dai, O. Hakizimana, X. Zhang, A. Chandra Kaushik, J. Zhang","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1080__002f21505594__002e2020__002e1726594","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://www.tandfonline.com/doi/abs/10.1080/21505594.2020.1726594?needAccess=true","outlink":"https://doi.org/10.1080/21505594.2020.1726594","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.09769913","orig_y":"-0.32505034","resized":false},{"id":"https://doi.org/10.26434/chemrxiv.12009582","title":"Homology Modeling of TMPRSS2 Yields Candidate Drugs That May Inhibit Entry of SARS-CoV-2 into Human Cells","authors":"Rensi, Stefano; Altman, Russ B; Liu, Tianyun; Lo, Yu-Chen; McInnes, Greg; Derry, Alex; Keys, Allison","paper_abstract":"The most rapid path to discovering treatment options for the novel coronavirus SARS-CoV-2 is to find existing medications that are active against the virus. We have focused on identifying repurposing candidates for the transmembrane serine protease family member II (TMPRSS2), which is critical for entry of coronaviruses into cells. Using known 3D structures of close homologs, we created seven homology models. We also identified a set of serine protease inhibitor drugs, generated several conformations of each, and docked them into our models. We used three known chemical (non-drug) inhibitors and one validated inhibitor of TMPRSS2 in MERS as benchmark compounds and found six compounds with predicted high binding affinity in the range of the known inhibitors. We also showed that a previously published weak inhibitor, Camostat, had a significantly lower binding score than our six compounds. All six compounds are anticoagulants with significant and potentially dangerous clinical effects and side effects. Nonetheless, if these compounds significantly inhibit SARS-CoV-2 infection, they could represent a potentially useful clinical tool.","published_in":"ChemRxiv","year":"2020-03-20","url":"https://doi.org/10.26434/chemrxiv.12009582","readers":0,"subject_orig":"structural modeling, computational modeling","subject":"structural modeling, computational modeling","oa_state":1,"link":"https://s3-eu-west-1.amazonaws.com/itempdf74155353254prod/12009582/Homology_Modeling_of_TMPRSS2_Yields_Candidate_Drugs_That_May_Inhibit_Entry_of_SARS-CoV-2_into_Human_Cells_v1.pdf","relevance":17,"comments":[],"tags":"Peer-reviewed","resulttype":"Preprint","lang_detected":"english","cluster_labels":"Antibody-dependent enhancement, Coronavirus entry, Spike protein","x":247.95990194528883,"y":95.00075386275259,"area_uri":3,"area":"Therapeutics","file_hash":"hashHash","authors_string":"Stefano Rensi, Russ B Altman, Tianyun Liu, Yu-Chen Lo, Greg McInnes, Alex Derry, Allison Keys","authors_short_string":"S. Rensi, R. Altman, T. Liu, Y. Lo, G. McInnes, A. Derry, A. Keys","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e26434__002fchemrxiv__002e12009582","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://s3-eu-west-1.amazonaws.com/itempdf74155353254prod/12009582/Homology_Modeling_of_TMPRSS2_Yields_Candidate_Drugs_That_May_Inhibit_Entry_of_SARS-CoV-2_into_Human_Cells_v1.pdf","outlink":"https://doi.org/10.26434/chemrxiv.12009582","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.14217998","orig_y":"-0.37230289","resized":false},{"id":"https://doi.org/10.21203/rs.3.rs-18079/v1","title":"Utility of Ferritin, Procalcitonin, and C-reactive Protein in Severe Patients with 2019 Novel Coronavirus Disease","authors":"Zhou, Bo; She, Jianqing; Wang, Yadan; Ma, Xiancang","paper_abstract":"ObjectivesIt is of clinical significance to evaluate the disease severity and investigate possible biomarkers of 2019 Novel coronavirus disease (COVID-19). In this study, we aim to describe the clinical characteristics of infection makers in severe and very severe patients with COVID-19. MethodsThis is a single center, observational analysis. We enrolled 48 in-hospital severe patients with COVID-19 admitted to the West District of Union Hospital of Tongji Medical College and analyzed infection biomarkers in 20 patients who had been tested for ferritin, PCT, CRP, etc. ResultsThe median age was 59yrd (inter quartile range [IQR]:46-61) among severe COVID-19 group and 57yrd (IQR:45-71.5) among very severe group. We noted significantly increased CRP (1.48mg/L [IQR: 16.69-2.74] vs. 57.98mg/L [IQR: 38.335-77.565], P<0.05), PCT(0.05ng/ml [IQR: 0.03-0.06] vs. 0.21ng/ml [IQR: 0.11-0.42], P<0.05) and ferritin (291.13ng/ml [IQR: 102.1-648.42] vs. 1006.16ng/ml [IQR: 408.265-1988.25]). For blood count, significant increase was noticed in neutrophil percentage (67.6% [IQR: 61.8-76.4] vs. 86.7% [IQR: 82-92.35], P<0.01) and neutrophil count (3.75*10^9/L [IQR: 3.42-4.93] vs. 8.11*10^9/L [IQR: 5.675-8.905], P<0.05); and decrease was seen in lymphocyte percentage (22.7% [IQR: 17.4-27.4] vs. 8% [IQR: 4.85-13], P<0.05), lymphocyte count (1.62*10^9/L [IQR: 0.7-1.73] vs. 0.68*10^9/L [IQR: 0.385-1.04], P<0.05), and platelet count (214*10^9/L [IQR: 184-247] vs. 147*10^9/L [IQR: 126-202.5], P<0.05). ConclusionsThe serum levels of CRP, PCT and ferritin are markedly increased in very severe compared with severe COVID-19. Increased CRP, PCT and ferritin level might correlate to secondary bacterial infection and associated with poor clinical prognosis.","published_in":"Research Square","year":"2020-03-19","url":"https://doi.org/10.21203/rs.3.rs-18079/v1","readers":0,"subject_orig":"COVID-19, Biomarkers, C-reactive protein, Ferritin, Procalcitonin","subject":"COVID-19, Biomarkers, C-reactive protein, Ferritin, Procalcitonin","oa_state":1,"link":"https://assets.researchsquare.com/files/rs-18079/v1/manuscript.pdf","relevance":18,"comments":[],"tags":"Peer-reviewed","resulttype":"Preprint","lang_detected":"english","cluster_labels":"Coagulation, Coagulopathy, Clotting, Blood clot, Frequent neurologic, Covid19 patients","x":-21.620172513477936,"y":721.4943161902119,"area_uri":2,"area":"Host biology and clinical findings","file_hash":"hashHash","authors_string":"Bo Zhou, Jianqing She, Yadan Wang, Xiancang Ma","authors_short_string":"B. Zhou, J. She, Y. Wang, X. Ma","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e21203__002frs__002e3__002ers__002d18079__002fv1","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://assets.researchsquare.com/files/rs-18079/v1/manuscript.pdf","outlink":"https://doi.org/10.21203/rs.3.rs-18079/v1","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"-0.02325868","orig_y":"0.29054618","resized":false},{"id":"https://doi.org/10.21203/rs.3.rs-17952/v1","title":"Small Particle Aerosol Exposure of African Green Monkeys to MERS-CoV as a Model for Highly Pathogenic Coronavirus Infection","authors":"Totura, Allison; Livingston, Virginia; Frick, Ondraya; Dyer, David; Nichols, Donald; Nalca, Aysegul","paper_abstract":"Emerging highly pathogenic coronaviruses (CoV) are a global public health threat due to the potential for person-to-person transmission and higher mortality rates than common seasonal respiratory pathogens. Middle East respiratory syndrome coronavirus (MERS-CoV) emerged in 2012, causing lethal respiratory disease in approximately 35% of human cases. Primate models of highly pathogenic coronavirus infection are needed to support development of therapeutics or vaccines, but few models exist that recapitulate severe disease signs. For initial development of a MERS-CoV primate model, twelve African green monkeys (AGMs) were exposed to 103, 104, or 105 PFU target doses of aerosolized MERS-CoV. We observed a dose-dependent increase of respiratory disease signs and viral titers in serum and throat swabs between the 103 PFU and the 105 PFU dose groups, although all AGMs survived for the 28 day duration of the study. This study is the first to describe dose-dependent effects of highly pathogenic coronavirus infection of primates and uses a route of infection (small particle aerosol) with potential relevance to MERS-CoV transmission in humans. Aerosol exposure of AGMs may provide a platform for the development of primate models of novel coronavirus disease, with potential utility in therapeutic development and viral pathogenesis studies.","published_in":"Research Square","year":"2020-03-19","url":"https://doi.org/10.21203/rs.3.rs-17952/v1","readers":0,"subject_orig":"coronavirus, CoV, Middle East respiratory syndrome, MERS, MERS-CoV, primate model, African green monkey, respiratory, aerosol, infectious disease, animal model, medical countermeasure, small particle aerosol","subject":"coronavirus, CoV, Middle East respiratory syndrome, MERS, MERS-CoV, primate model, African green monkey, respiratory, aerosol, infectious disease, animal model, medical countermeasure, small particle aerosol","oa_state":1,"link":"https://assets.researchsquare.com/files/rs-17952/v1/manuscript.pdf","relevance":19,"comments":[],"tags":"Peer-reviewed","resulttype":"Preprint","lang_detected":"english","cluster_labels":"Antibody-dependent enhancement, Coronavirus entry, Spike protein","x":513.1472553960173,"y":399.8800181809991,"area_uri":2,"area":"Host biology and clinical findings","file_hash":"hashHash","authors_string":"Allison Totura, Virginia Livingston, Ondraya Frick, David Dyer, Donald Nichols, Aysegul Nalca","authors_short_string":"A. Totura, V. Livingston, O. Frick, D. Dyer, D. Nichols, A. Nalca","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e21203__002frs__002e3__002ers__002d17952__002fv1","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://assets.researchsquare.com/files/rs-17952/v1/manuscript.pdf","outlink":"https://doi.org/10.21203/rs.3.rs-17952/v1","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.30492287","orig_y":"-0.04973144","resized":false},{"id":"https://arxiv.org/abs/arXiv:2003.08447","title":"Potential Neutralizing Antibodies Discovered for Novel Corona Virus Using Machine Learning","authors":"Magar, Rishikesh; Yadav, Prakarsh; Barati Farimani, Amir","paper_abstract":"The fast and untraceable virus mutations take lives of thousands of people before the immune system can produce the inhibitory antibody. Recent outbreak of novel coronavirus infected and killed thousands of people in the world. Rapid methods in finding peptides or antibody sequences that can inhibit the viral epitopes of COVID-19 will save the life of thousands. In this paper, we devised a machine learning (ML) model to predict the possible inhibitory synthetic antibodies for Corona virus. We collected 1933 virus-antibody sequences and their clinical patient neutralization response and trained an ML model to predict the antibody response. Using graph featurization with variety of ML methods, we screened thousands of hypothetical antibody sequences and found 8 stable antibodies that potentially inhibit COVID-19. We combined bioinformatics, structural biology, and Molecular Dynamics (MD) simulations to verify the stability of the candidate antibodies that can inhibit the Corona virus.","published_in":"ArXiv","year":"2020-03-18","url":"https://arxiv.org/abs/arXiv:2003.08447","readers":0,"subject_orig":"Coronavirus, COVID-19, Machine Learning, Antibody Engineering, Bio-informatics, Structural Biology","subject":"Coronavirus, COVID-19, Machine Learning, Antibody Engineering, Bio-informatics, Structural Biology","oa_state":1,"link":"https://arxiv.org/ftp/arxiv/papers/2003/2003.08447.pdf","relevance":20,"comments":[],"tags":"Peer-reviewed","resulttype":"Preprint","lang_detected":"english","cluster_labels":"Antibody responses, Binding domain, Covid19 patients","x":-161.59067344293788,"y":148.38598173941404,"area_uri":3,"area":"Therapeutics","file_hash":"hashHash","authors_string":"Rishikesh Magar, Prakarsh Yadav, Amir Barati Farimani","authors_short_string":"R. Magar, P. Yadav, A. Barati Farimani","safe_id":"https__003a__002f__002farxiv__002eorg__002fabs__002farXiv__003a2003__002e08447","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://arxiv.org/ftp/arxiv/papers/2003/2003.08447.pdf","outlink":"https://arxiv.org/abs/arXiv:2003.08447","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"-0.10915721","orig_y":"-0.31581971","resized":false},{"id":"https://doi.org/10.1101/2020.03.24.004655","title":"SARS-CoV-2 launches a unique transcriptional signature from in vitro, ex vivo, and in vivo systems","authors":"Blanco-Melo, Daniel; Nilsson-Payant, Benjamin; Liu, Wen-Chun; Moeller, Rasmus; Panis, Maryline; Sachs, David; Albrecht, Randy; tenOever, Benjamin R.","paper_abstract":"One of the greatest threats to humanity is the emergence of a pandemic virus. Among those with the greatest potential for such an event include influenza viruses and coronaviruses. In the last century alone, we have observed four major influenza A virus pandemics as well as the emergence of three highly pathogenic coronaviruses including SARS-CoV-2, the causative agent of the ongoing COVID-19 pandemic. As no effective antiviral treatments or vaccines are presently available against SARS-CoV-2, it is important to understand the host response to this virus as this may guide the efforts in development towards novel therapeutics. Here, we offer the first in-depth characterization of the host transcriptional response to SARS-CoV-2 and other respiratory infections through in vitro, ex vivo, and in vivo model systems. Our data demonstrate the each virus elicits both core antiviral components as well as unique transcriptional footprints. Compared to the response to influenza A virus and respiratory syncytial virus, SARS-CoV-2 elicits a muted response that lacks robust induction of a subset of cytokines including the Type I and Type III interferons as well as a numerous chemokines. Taken together, these data suggest that the unique transcriptional signature of this virus may be responsible for the development of COVID-19.","published_in":"BoioRxiv","year":"2020-03-24","url":"https://doi.org/10.1101/2020.03.24.004655","readers":0,"subject_orig":"COVID-19, transcriptomics, in vitro, in vivo, ex vivo","subject":"COVID-19, transcriptomics, in vitro, in vivo, ex vivo","oa_state":1,"link":"https://www.biorxiv.org/content/10.1101/2020.03.24.004655v1.full.pdf","relevance":21,"comments":[],"tags":"","resulttype":"Preprint","lang_detected":"english","cluster_labels":"Antibody tests, Cell infection, Covid19 infection","x":197.98100687586228,"y":299.2185472002852,"area_uri":2,"area":"Host biology and clinical findings","file_hash":"hashHash","authors_string":"Daniel Blanco-Melo, Benjamin Nilsson-Payant, Wen-Chun Liu, Rasmus Moeller, Maryline Panis, David Sachs, Randy Albrecht, Benjamin R. tenOever","authors_short_string":"D. Blanco-Melo, B. Nilsson-Payant, W. Liu, R. Moeller, M. Panis, D. Sachs, R. Albrecht, B. tenOever","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1101__002f2020__002e03__002e24__002e004655","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://www.biorxiv.org/content/10.1101/2020.03.24.004655v1.full.pdf","outlink":"https://doi.org/10.1101/2020.03.24.004655","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.11150842","orig_y":"-0.15623431","resized":false},{"id":"https://www.biorxiv.org/content/10.1101/2020.03.13.990226v1","title":"Reinfection could not occur in SARS-CoV-2 infected rhesus macaques","authors":"Bao, Linlin; Deng, Wei; Gao, Hong; Xiao, Chong; Liu, Jiayi; Xue, Jing; Lv, Qi; Liu, Jiangning; Yu, Pin; Xu, Yanfeng; Qi, Feifei; Qu, Yajin; Li, Fengdi; Xiang, Zhiguang; Yu, Haisheng; Gong, Shuran; Liu, Mingya; Wang, Guanpeng; Wang, Shunyi; Song, Zhiqi; Zhao, Wenjie; Han, Yunlin; Zhao, Linna; Liu, Xing; Wei, Qiang; Qin, Chuan","paper_abstract":"An outbreak of the Corona Virus Disease 2019 (COVID-19), caused by the severe acute respiratory syndrome CoV-2 (SARS-CoV-2), began in Wuhan and spread globally. Recently, it has been reported that discharged patients in China and elsewhere were testing positive after recovering. However, it remains unclear whether the convalescing patients have a risk of “relapse” or “reinfection”. The longitudinal tracking of re-exposure after the disappeared symptoms of the SARS-CoV-2-infected monkeys was performed in this study. We found that weight loss in some monkeys, viral replication mainly in nose, pharynx, lung and gut, as well as moderate interstitial pneumonia at 7 days post-infection (dpi) were clearly observed in rhesus monkeys after the primary infection. After the symptoms were alleviated and the specific antibody tested positively, the half of infected monkeys were rechallenged with the same dose of SARS-CoV-2 strain. Notably, neither viral loads in nasopharyngeal and anal swabs along timeline nor viral replication in all primary tissue compartments at 5 days post-reinfection (dpr) was found in re-exposed monkeys. Combined with the follow-up virologic, radiological and pathological findings, the monkeys with re-exposure showed no recurrence of COVID-19, similarly to the infected monkey without rechallenge. Taken together, our results indicated that the primary SARS-CoV-2 infection could protect from subsequent exposures, which have the reference of prognosis of the disease and vital implications for vaccine design.","published_in":"BioRxiv","year":"2020-03-14","url":"https://www.biorxiv.org/content/10.1101/2020.03.13.990226v1","readers":0,"subject_orig":"rhesus macaque, immune memory, COVID-19","subject":"rhesus macaque, immune memory, COVID-19","oa_state":1,"link":"https://www.biorxiv.org/content/biorxiv/early/2020/03/14/2020.03.13.990226.full.pdf","relevance":22,"comments":[],"tags":"","resulttype":"Preprint","lang_detected":"english","cluster_labels":"Acute respiratory syndrome, Clinical characteristics, Cohort study","x":113.54964915053579,"y":436.14450501728203,"area_uri":5,"area":"Immunity","file_hash":"hashHash","authors_string":"Linlin Bao, Wei Deng, Hong Gao, Chong Xiao, Jiayi Liu, Jing Xue, Qi Lv, Jiangning Liu, Pin Yu, Yanfeng Xu, Feifei Qi, Yajin Qu, Fengdi Li, Zhiguang Xiang, Haisheng Yu, Shuran Gong, Mingya Liu, Guanpeng Wang, Shunyi Wang, Zhiqi Song, Wenjie Zhao, Yunlin Han, Linna Zhao, Xing Liu, Qiang Wei, Chuan Qin","authors_short_string":"L. Bao, W. Deng, H. Gao, C. Xiao, J. Liu, J. Xue, Q. Lv, J. Liu, P. Yu, Y. Xu, F. Qi, Y. Qu, F. Li, Z. Xiang, H. Yu, S. Gong, M. Liu, G. Wang, S. Wang, Z. Song, W. Zhao, Y. Han, L. Zhao, X. Liu, Q. Wei, C. Qin","safe_id":"https__003a__002f__002fwww__002ebiorxiv__002eorg__002fcontent__002f10__002e1101__002f2020__002e03__002e13__002e990226v1","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://www.biorxiv.org/content/biorxiv/early/2020/03/14/2020.03.13.990226.full.pdf","outlink":"https://www.biorxiv.org/content/10.1101/2020.03.13.990226v1","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.05969372","orig_y":"-0.01136252","resized":false},{"id":"https://doi.org/10.1016/S0140-6736(20)30260-9","title":"Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study","authors":"Wu, Joseph T; Leung, Kath; Leung, Gabriel M","paper_abstract":"Background Since Dec 31, 2019, the Chinese city of Wuhan has reported an outbreak of atypical pneumonia caused by the 2019 novel coronavirus (2019-nCoV). Cases have been exported to other Chinese cities, as well as internationally, threatening to trigger a global outbreak. Here, we provide an estimate of the size of the epidemic in Wuhan on the basis of the number of cases exported from Wuhan to cities outside mainland China and forecast the extent of the domestic and global public health risks of epidemics, accounting for social and non-pharmaceutical prevention interventions. Methods We used data from Dec 31, 2019, to Jan 28, 2020, on the number of cases exported from Wuhan internationally (known days of symptom onset from Dec 25, 2019, to Jan 19, 2020) to infer the number of infections in Wuhan from Dec 1, 2019, to Jan 25, 2020. Cases exported domestically were then estimated. We forecasted the national and global spread of 2019-nCoV, accounting for the effect of the metropolitan-wide quarantine of Wuhan and surrounding cities, which began Jan 23–24, 2020. We used data on monthly flight bookings from the Official Aviation Guide and data on human mobility across more than 300 prefecture-level cities in mainland China from the Tencent database. Data on confirmed cases were obtained from the reports published by the Chinese Center for Disease Control and Prevention. Serial interval estimates were based on previous studies of severe acute respiratory syndrome coronavirus (SARS-CoV). A susceptible-exposed-infectious-recovered metapopulation model was used to simulate the epidemics across all major cities in China. The basic reproductive number was estimated using Markov Chain Monte Carlo methods and presented using the resulting posterior mean and 95% credibile interval (CrI).Findings In our baseline scenario, we estimated that the basic reproductive number for 2019-nCoV was 2·68 (95% CrI 2·47–2·86) and that 75 815 individuals (95% CrI 37 304–130 330) have been infected in Wuhan as of Jan 25, 2020. The epidemic doubling time was 6·4 days (95% CrI 5·8–7·1). We estimated that in the baseline scenario, Chongqing, Beijing, Shanghai, Guangzhou, and Shenzhen had imported 461 (95% CrI 227–805), 113 (57–193), 98 (49–168), 111 (56–191), and 80 (40–139) infections from Wuhan, respectively. If the transmissibility of 2019-nCoV were similar everywhere domestically and over time, we inferred that epidemics are already growing exponentially in multiple major cities of China with a lag time behind the Wuhan outbreak of about 1–2 weeks. Interpretation Given that 2019-nCoV is no longer contained within Wuhan, other major Chinese cities are probably sustaining localised outbreaks. Large cities overseas with close transport links to China could also become outbreak epicentres, unless substantial public health interventions at both the population and personal levels are implemented immediately. Independent self-sustaining outbreaks in major cities globally could become inevitable because of substantial exportation of presymptomatic cases and in the absence of large-scale public health interventions. Preparedness plans and mitigation interventions should be readied for quick deployment globally","published_in":"The Lancet","year":"2020-01-31","url":"https://doi.org/10.1016/S0140-6736(20)30260-9","readers":0,"subject_orig":"Forecast","subject":"Forecast","oa_state":3,"link":"https://www.thelancet.com/action/showPdf?pii=S0140-6736%2820%2930260-9","relevance":23,"comments":[],"tags":"Peer-reviewed","resulttype":"dataset","lang_detected":"english","cluster_labels":"Chain reaction, Clinical presentations, Coronavirus 2019-ncov","x":524.1610202951634,"y":706.5070115422658,"area_uri":4,"area":"Epidemiology","file_hash":"hashHash","authors_string":"Joseph T Wu, Kath Leung, Gabriel M Leung","authors_short_string":"J. Wu, K. Leung, G. Leung","safe_id":"https__003a__002f__002fdoi__002eorg__002f10__002e1016__002fS0140__002d6736__002820__002930260__002d9","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":true,"oa_link":"https://www.thelancet.com/action/showPdf?pii=S0140-6736%2820%2930260-9","outlink":"https://doi.org/10.1016/S0140-6736(20)30260-9","comments_for_filtering":"","diameter":37.33846153846154,"width":27.78759700135467,"height":37.05012933513956,"orig_x":"0.31168191","orig_y":"0.27468916","resized":false}]`
-export default JSON.parse(data);
+const rawData = JSON.parse(data);
+rawData.forEach((paper) => {
+ paper.resulttype = [paper.resulttype];
+ paper.keywords = paper.subject_orig;
+ paper.list_link = { address: paper.link, isDoi: false };
+ paper.tags = (paper.tags ? paper.tags : "")
+ .split(",")
+ .map((tag) => tag.trim())
+ .filter((tag) => !!tag);
+});
+
+export default rawData;
diff --git a/vis/test/data/linkedcat-streamgraph.js b/vis/test/data/linkedcat-streamgraph.js
index 705a89227..832d8fa7e 100644
--- a/vis/test/data/linkedcat-streamgraph.js
+++ b/vis/test/data/linkedcat-streamgraph.js
@@ -1,3 +1,12 @@
const data = `[{"id":"AC13315760","subject":"","authors":"Hammer-Purgstall, Joseph <<von>>; Chmel, Joseph; Goldenthal, Jacob","title":"Sitzung vom 22. März 1848","paper_abstract":"Der Seeretär macht den Mitgliedern der historischen Commission bekannt, dass ihnen die Benützung des Hofkammer-Archives gestattet wird. Ferner theilt er Zuschriften von dem historischen Vereine in Kärnten, von dem Ausschusse des Vereines für siebenbürgische Landeskunde, dem Verwaltungs-Ausschusse des Franciseo-Carolinum in Linz, und von den Stiftsvorstehern von Ossegg und Neustift (in Tirol) mit, worin sie sich bereitwillig erklären, die historische Commission zu unterstützen, und zum Theil schon jetzt Original-Urkunden (100 Stück von dem Vereine in Kärnten) und Urkunden-Verzeichnisse mitsenden. Der Herr Präsident erstattet folgenden Bericht über Professor Wenrich’s handschriftlichen Nachlass. Er besteht aus: 1. Gefhichte der hriftlichen Kirche von der Reformation bis zu. den neueften Beiten, 1823—1824. 18 Bogen, Er besteht aus: 2. Die Sittenlehre der Vernunft und des Ehriftenthums, wiffenfchaftlich dargeftellt. 1823— 1824. 73 Bogen. 1. Gefhichte der hriftlichen Kirche von der Reform","year":1848,"readers":0,"url":"AC13315760","link":"http://hdl.handle.net/21.11115/0000-000C-C6F5-0","published_in":"","oa_state":1,"subject_orig":"","relevance":91,"bkl_caption":"","bkl_top_caption":"","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":"1.00000000","comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>, Chmel, Joseph, Goldenthal, Jacob","authors_short_string":"Hammer-Purgstall, J. , Chmel, J. , Goldenthal, J. ","safe_id":"AC13315760","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C6F5-0","outlink":"https://permalink.obvsg.at/AC13315760","comments_for_filtering":"","resized":false},{"id":"AC15090246","subject":"Medina Azahara","authors":"Gayangos, Pascual <<de>>; Hammer-Purgstall, Joseph <<von>>","title":"Über die Entdeckung der Ruinen des Palastes Sehra","paper_abstract":"41 Jahren nur 18 Rigorosen vor, in welchen der Candidat ein geborner Unger, Croate oder Siebenbürger war. Auf Ausländer konnte man bei der älteren Studienverfassung wenig oder keineRechnung machen; aber auch gegenwärtig, obgleich das neue System den Angehörigen deutscher Staaten den Besuch österreichischer Lehranstalten wesentlich erleichterte, ist die Aussicht auf Doetoratscandidaten von dorther nicht grösser geworden. Israeliten machen regelmässig 5—6 Procente der Gesammtzahl der Rigorosanten aus; diese Nation wendet sich aus leicht begreiflichen Gründen mehr den medieinischen als den juridischen Studien zu. Freiherr Hammer-Purgstall macht folgende Mittheilung aus einem an ihn gerichteten Schreiben vom 1. Februar d. J. des c. M,, Prof, Pascual de &ayangos in Madrid: Mon respectable confröre et ami! Mes travaux pour le moment sont exelusivement diriges & illustrer P’histoire et la geographie de l’Espagne, qui au moyen äge etait presqu’ entierement musulmane, comme je le prouverai u","year":1854,"readers":0,"url":"AC15090246","link":"http://hdl.handle.net/21.11115/0000-000C-C9C3-5","published_in":"","oa_state":1,"subject_orig":"Medina Azahara","relevance":90,"bkl_caption":"Spanien. Portugal; Archäologie","bkl_top_caption":"Geschichte; Geschichte","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.00000001,"comments":[],"authors_string":"Gayangos, Pascual <<de>>, Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Gayangos, P. , Hammer-Purgstall, J. ","safe_id":"AC15090246","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C9C3-5","outlink":"https://permalink.obvsg.at/AC15090246","comments_for_filtering":"","resized":false},{"id":"AC15090623","subject":"","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Auszüge aus dem handschriftlichen Werke Ahmed Ibn-el-Omerî's: Die Bekanntmachung mit der edlen Terminologie","paper_abstract":"Auszüge aus dem handsehriftlichen Werke Ahmed Iin-el-Omeri’s: Die Bekanntm achung mit der edlen Terminologie. Von dem w. M., Dr. Freiherrn Hammer-Purgstall. Aus dem zweiten Hauptstücke der Diplome und Amts-Instructionen. Verhaltungsbefehle für den Obersthofmeister. „Er bemesse den Lohn:nach den Diensten und fordere von Jedem was. demselben zusteht; er halte gehörige. Aufsicht, sodass ihm Nichts entgeht; sehe darauf, dass die Tafel. mit den gehörigen Speisen versehen sei, jeden Tag: zum Früh-.und Abendmahle; er überwache ‚den Zustand der Hofküche und sorge. dafür, dass es derselben an Nichts gebreehe; er gehe. den Intendanten’ und den: Aufsehern der Lebensmittel mit gutem, Beispiele vor; ‚sorge; für die Getränke und für den gehörigen Zustand der Keller (Scherabchanat), sorge dafür, dass den Ärzten das Ihrige werde und dass sie ihre Arzneien kochen bei Kohlen die glühen und wie Rubinen Funken sprühen, dass’ Alles (dem ‘edlen Krongut angeeignet bleibe und dass Nichts abgeliefert werde a","year":1854,"readers":0,"url":"AC15090623","link":"http://hdl.handle.net/21.11115/0000-000C-C9CC-C","published_in":"","oa_state":1,"subject_orig":"","relevance":89,"bkl_caption":"Arabische Sprache und Literatur; Texte eines einzelnen Autors","bkl_top_caption":"Einzelne Sprachen und Literaturen; Sprach- und Literaturwissenschaft","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000000199999999,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15090623","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C9CC-C","outlink":"https://permalink.obvsg.at/AC15090623","comments_for_filtering":"","resized":false},{"id":"AC15208211","subject":"Muḥammad; 570-632","authors":"Sprenger, Aloys; Hammer-Purgstall, Joseph <<von>>","title":"Brief an Freih. Hammer-Purgstall","paper_abstract":"Sitzungsberichte der philosophisch - historischen Classe, Sitzung vom 4. December 1850. Freiherr Hammer-Purgstall theilt folgendes an ihn gerichtete Schreiben des Hrn. Dr. Alois Sprenger (eines gebornen Tirolers) mit. Vielleicht ist es Ihnen unbekannt geblieben, dass ich im Januar 1848 von der Regierung als Assistent-Resident oder Legations-Secretär nach Lucknov gesendet wurde, um dort den Katalos ‘der königlichen und anderer Bibliotheken zu machen. Zwei Jahre war ich mit dieser Arbeit beschäftigt und kehrte im Januar d. J. wieder nach Delhi zurück. Ich sah in Allem ohngefähr zehntausend Handschriften, darunter waren viele unbedeutende und Bruchstücke, die Anzahl derer, welche ich in mein Verzeichniss aufnahm, ist etwas weniger als fünftausend. Darunter sind wenige Werke von grossem Interesse, aber mein Katalog wird auf jeden Fall die jetzt im Orient studirten Bücher enthalten und eine bessere Einsicht geben in die Schia-Literatur als wir bisher hatten. Ich bin im Begriffe eine Biogr","year":1850,"readers":0,"url":"AC15208211","link":"http://hdl.handle.net/21.11115/0000-000C-C849-1","published_in":"","oa_state":1,"subject_orig":"Muḥammad; 570-632","relevance":88,"bkl_caption":"Islam: Allgemeines","bkl_top_caption":"Theologie","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000000299999998,"comments":[],"authors_string":"Sprenger, Aloys, Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Sprenger, A. , Hammer-Purgstall, J. ","safe_id":"AC15208211","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C849-1","outlink":"https://permalink.obvsg.at/AC15208211","comments_for_filtering":"","resized":false},{"id":"AC15209690","subject":"Lane, Edward William; 1801-1876; Arabisch; Englisch; Wörterbuch","authors":"Kremer, Alfred <<von>>; Hammer-Purgstall, Joseph <<von>>","title":"Stelle aus dessen Brief an Freih. Hammer-Purgstall, aus Cairo vom 1. Dec. v.J.","paper_abstract":"Sitzungsberichte der philosophisch - historischen Classe, Sitzung vom 2. Jänner 1851. ‚Aut die von der Classe ergangenen Ersuchschreiben an die ‚Bibliotheken zu Heidelberg und Leipzig um Einsendung der von dem corresp. Mitgl. Hrn. Bibliothekar Toldy in Pesth erbetenen Handschriften unter ihrer Mithaftung werden von dem Secretär die Antworten vorgelegt, und zwar vom Hrn. geh. Hofrath Prof. Bähr, Oberbibliothekar zu Heidelberg, die Anzeige, dass der erbetene Cod. palat. Nr. 156 von ihm bereits am 8. October v. J. dem grossherzogl. bad. Ministerium des Aeussern übergeben worden sei, um durch dessen und die Vermittlung der k, k. Gesandtschaft zu Karlsruhe Hrn, T oldy zugesendet zu werden. — Von Hro. Dr. Robert Naumann, Vorsteher der Stadtbibliothek zu Leipzig, ist die gewünschte Einsendung der ungrischen Liederhandschrift erfolgt, Die Classe beauftragt den Secretär, letztere Hrn. Toldy zu-‚Aut die von der Classe ergangenen Ersuchschreiben an die ‚Bibliotheken zu Heidelberg und Leipzig um E","year":1851,"readers":0,"url":"AC15209690","link":"http://hdl.handle.net/21.11115/0000-000C-C855-3","published_in":"","oa_state":1,"subject_orig":"Lane, Edward William; 1801-1876; Arabisch; Englisch; Wörterbuch","relevance":87,"bkl_caption":"","bkl_top_caption":"","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000000399999998,"comments":[],"authors_string":"Kremer, Alfred <<von>>, Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Kremer, A. , Hammer-Purgstall, J. ","safe_id":"AC15209690","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C855-3","outlink":"https://permalink.obvsg.at/AC15209690","comments_for_filtering":"","resized":false},{"id":"AC15216406","subject":"","authors":"Gayangos, Pascual <<de>>; Hammer-Purgstall, Joseph <<von>>","title":"Auszug aus einem Schreiben des corresp. Mitgl. Herrn Pascual de Gayangos an den Freih. Hammer-Purgstall","paper_abstract":"Die Classe empfängt mit Vergnügen den von dem Vereine für siebenbürgische Landeskunde eingesandten ersten Band des Siebenbürgischen Urkundenbuches, dessen Abdruck in den Fontes rerum austriacarum bestimmt worden war. Der Secretär liest folgende Stelle aus einem an den Freiherrn Hammer-Purgstall gerichteten Schreiben des eorresp. Mitgl. Hrn. Pascual de Gayangos: „J’ai passe quelques semaines A Cordoue, etreconnu l’emplacement oceupe par Medina Az-zahrä. Je fais dans ce moment-ei dresser un plan du terrain; mais malheureusement le gouvernement a retire la petite somme qui avait d’abord &t& destinde pour les excavations, et rien n’a t& fait sauf mettre ä decouvert une espöce de vestibule sous une des portes d’entree, avec des fragments de & en espagnol azulejos, et des dalles d’ albätre et de marble eiseldes & la maniere byzantine. Dans une autre occasion je me propose de vous envoyer des dessins de tout ceei. Il y a bien de quoi regretter que notre gouvernement soit insensible A cett","year":1855,"readers":0,"url":"AC15216406","link":"http://hdl.handle.net/21.11115/0000-000C-CA12-C","published_in":"","oa_state":1,"subject_orig":"","relevance":86,"bkl_caption":"","bkl_top_caption":"","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000000499999997,"comments":[],"authors_string":"Gayangos, Pascual <<de>>, Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Gayangos, P. , Hammer-Purgstall, J. ","safe_id":"AC15216406","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-CA12-C","outlink":"https://permalink.obvsg.at/AC15216406","comments_for_filtering":"","resized":false},{"id":"AC15181350","subject":"Waṣṣāf al-Ḥaḍrat, Abdallāh Ibn-Faḍlallāh; 1264-1329; Herausgabe","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Vortrag über die Herausgabe der Geschichte Wassaf's","paper_abstract":"nächste Jahr ihr behufs ihrer Publieationen wenigstens einen Raum von hundert Druckbogen vergönne. Wenn man den Umfang unseres grossen Staates, die Mannigfaltigkeit der vaterländischen Geschichten, die Anzahl der auswärtigen Mitglieder, die zur Mitwirkung berufen sind, bedenkt, so wird diese Bitte wirklich nieht unbescheiden genannt werden können.” Die Classe gestattet der historischen Commission, die verlangten hundert Druckbogen als Basis ihres Planes anzunehmen. Der Präsident, Herr Baron von Hammer-Purgstall, hält folgenden Vortrag über die Herausgabe orientalischer Werke, und zwar zuerst der Geschichte Wassaf’s: „Das schönste und grossartigste Beispiel literarischer, von Gelehrtenyereinen zu unternehmender und von Regierungen zu unterstützender Arbeiten wird der Welt zu Paris gegeben. Dort erscheint in einemfort und gleichzeitig ein halbes Dutzend historischer und philologischer Werke, nämlich: Le recueil des historiens de France. Le recueil des ordonnances. Le recueil des hist","year":1848,"readers":0,"url":"AC15181350","link":"http://hdl.handle.net/21.11115/0000-000C-C6D3-6","published_in":"","oa_state":1,"subject_orig":"Waṣṣāf al-Ḥaḍrat, Abdallāh Ibn-Faḍlallāh; 1264-1329; Herausgabe","relevance":85,"bkl_caption":"Vorderer und mittlerer Orient; Arabische Sprache und Literatur","bkl_top_caption":"Geschichte; Einzelne Sprachen und Literaturen","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000000599999996,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15181350","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C6D3-6","outlink":"https://permalink.obvsg.at/AC15181350","comments_for_filtering":"","resized":false},{"id":"AC15181440","subject":"Orient; Siegel; Archäologie","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Vorbericht zu der für die Denkschriften eingereichten Abhandlung über die Siegel der Araber, Perser und Türken","paper_abstract":"Erörterungen niederlegen, in welchem .insbesondeve von Urkunden und Actenstücken, deren vollständiger Abdruck nicht nöthig, wenigstens genügende Auszüge, überhaupt aber Regesten oder Übersiehten des gesammten Urkunden -Schatzes mitgetheilt werden sollen, welche die Arbeiten der Geschichtsforschung so wesentlich erleichtern, ist ein wirklich unentbehrliehes Hülfsmittel, eine conditio sine gua non! Die unterzeichnete Commission trägt somit auf die Herausgabe eines solchen regelmässig erscheinenden Archives oder Notizenblattes für österreichische Geschichtsquellenkunde, das etwa den monatlichen akademischen Berichten beigegeben werden könnte, jedoch auch zum Besten der in-und ausländischen Geschichtsfreunde einzeln verkauft werden sollte, förmlich an. (Folgen die Unterschriften :) Enndlicher. Freiherr von Münch. Ohmel. Wolf. Der Herr Präsident, Baron von Hammer-Purgstall, liest seinen „Vorbericht über die von ihm für die Denkschriften eingereichte Abhandlung über die Siegel der Araber","year":1848,"readers":0,"url":"AC15181440","link":"http://hdl.handle.net/21.11115/0000-000C-C6D9-0","published_in":"","oa_state":1,"subject_orig":"Orient; Siegel; Archäologie","relevance":84,"bkl_caption":"Altorientalische Archäologie. christliche Archäologie","bkl_top_caption":"Geschichte","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000000699999996,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15181440","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C6D9-0","outlink":"https://permalink.obvsg.at/AC15181440","comments_for_filtering":"","resized":false},{"id":"AC15186037","subject":"Auer von Welsbach, Alois; 1813-1869; <<Die>> Sprachenhalle; Vaterunser; Übersetzung","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Bericht über Auer's Sprachenhalle","paper_abstract":"Der Herr Präsident Baron v. Hammer-Purgstall und die Herren Pfizmaier, Wuk-Stephanovich Karadschitsch (in dessen Namen der Secretär) und Boller erstatten Bericht über das vom Herrn Regierungsrath Auer verfasste und der Akademie überreichte Werk: „Die Sprachenhalle” (Wien 1844 — 1847 in Folio). a) Bericht des Herrn Baron v. Hammer - Purgstall. Die Sprachenhalle, d. i. die vollständigste und vollendetste der bisherigen Vater-Unser-Sammlungen in verschiedenen Sprachen und Mundarten, besteht aus zwei Hälften, deren durch sinnbildliche Vorstellungen und Porträte verschönerte Titelblätter aber nicht den Titel der Sprachenhalle, welcher nur auf dem Umschlage aus Pappendeckel erscheint, sondern den die Sache selbst sogleich bezeichnenden des Vater - Unsers führen. Auf dem Titelblatte der ersten Hälfte sind die sieben Bitten des Vater-Unsers sinnbildlieh und das Amen durch einen Weisen vorgestellt, dessen linke Hand sich auf einen Globus stützt, und dem zur rechten eine Druckerpresse steht, u","year":1848,"readers":0,"url":"AC15186037","link":"http://hdl.handle.net/21.11115/0000-000C-C70A-9","published_in":"","oa_state":1,"subject_orig":"Auer von Welsbach, Alois; 1813-1869; <<Die>> Sprachenhalle; Vaterunser; Übersetzung","relevance":83,"bkl_caption":"Neues Testament","bkl_top_caption":"Theologie","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000000799999995,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15186037","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C70A-9","outlink":"https://permalink.obvsg.at/AC15186037","comments_for_filtering":"","resized":false},{"id":"AC15194254","subject":"Bogaerts, Felix; 1805-1851; Tauben; Motiv; Kunst; Gesellschaft; Geschichte; Mythologie","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Bericht über Bogaert's Histoire civile et réligieuse de la colombe","paper_abstract":"Der Herr Präsident Freiherr Hammer-Purgstall liest fol-genden Berieht über das von Herrn Felix Bogaerts übersandte Werk „Histoire civile et religieuse de la Colombe (Anvers, 1847)’ - Der Verfasser erschöpft in dieser Einzelbeschreibung der Taube Alles, was Fabel und Geschichte, Mythelogie und Naturgeschichte, Sinnbildlehre und Diehtkunst an reichem Stoffe hiezu liefern; eine, bei dem Ansehen, in welches die Brieftauben in jüngster Zeit als Trägerinnen von Curszetteln und Handlangerinnen von Börse-Speculationen zwischen Paris und belgischen Städten gelangt sind, in Belgien gewiss sehr zeitgemässe und auch ausser Belgien den Dank von Taubenliebhabern verdienende literarische Erscheinung. Der Herr Präsident Freiherr Hammer-Purgstall liest fol-Die Anekdoten, welche den Eingang und den Schluss bilden, sind, wenn nicht reine Diehtung, doch diehterisch behandelt, während alles Übrige mythologische, naturbeschreibende oder geschichtliche Wahrheit, als solehe sich angenehmer Darstellung erfreu","year":1848,"readers":0,"url":"AC15194254","link":"http://hdl.handle.net/21.11115/0000-000C-C71C-5","published_in":"","oa_state":1,"subject_orig":"Bogaerts, Felix; 1805-1851; Tauben; Motiv; Kunst; Gesellschaft; Geschichte; Mythologie","relevance":82,"bkl_caption":"Texte eines einzelnen Autors","bkl_top_caption":"Sprach- und Literaturwissenschaft","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000000899999995,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15194254","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C71C-5","outlink":"https://permalink.obvsg.at/AC15194254","comments_for_filtering":"","resized":false},{"id":"AC15194318","subject":"Arabisch; Persisch; Etymologie","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Über das Wort Aleman bei den Persern und Arabern","paper_abstract":"eine Unterstützung derselben die Vollendung seines Werkes: „Medaillen auf berühmte und ausgezeichnete Männer des österreichischen Kaiserstaates vom 16. bis zum 19. Jahrhundert” möglich gemacht werde, da dessen bisheriger Verleger sich nieht weiter auf diese Unternehmung, einlassen will. Die Classe beschliesst einstimmig, sich dafür zu verwenden, nicht nur wegen der Verdienstlichkeit dieses für die österreichische Geschiehte und Ikonographie wichtigen Werkes, sondern auch weil es gerade jetzt mit zu den Hauptaufgaben der Akademie gehöre, solche wissenschaftliche Werke zu unterstützen, deren Erscheinung wegen Ungunst der Zeit zum Schaden der österreichischen Literatur sonst unterbleiben müsste. Der Herr Präsident Freiherr von Hammer - Purgstall liest einen Aufsatz: „Über das Wort Aleman bei den Persern und Arabern.” In der jüngsten Zeit haben die Perser das Wort Aleman in diplomatischen Verhandlungen als den Namen der Deutschen gebraucht, wie sie zu dieser Benennung gekommen, scheint","year":1848,"readers":0,"url":"AC15194318","link":"http://hdl.handle.net/21.11115/0000-000C-C721-E","published_in":"","oa_state":1,"subject_orig":"Arabisch; Persisch; Etymologie","relevance":81,"bkl_caption":"Etymologie","bkl_top_caption":"Sprach- und Literaturwissenschaft","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000000999999994,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15194318","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C721-E","outlink":"https://permalink.obvsg.at/AC15194318","comments_for_filtering":"","resized":false},{"id":"AC15195186","subject":"Orient; Frau; Kleidung; Souveränität; Geschichte; Arabisch; Inschrift","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Von der Inschriftverbrämung der Kleider als Souverainitätsrecht der Frauen im Morgenlande","paper_abstract":"Der Herr Präsident, Freiherr von Hammer-Purgstall, liest folgende Abhandlung: Von der Inschriftyerbrämung der Kleider als Souverainitätsrecht der Frauen im Morgenlande. Beide diese morgenländische Vorrechte sind bisher in Europa nur wenig und aufsehr unbestimmte Weise bekannt. Die arabische Inschrift des Krönungsmantels der deutschen römischen Kaiser (ein Geschenk eines arabischen Fürsten) ist zwar von Murr t) in der Beschreibung der Reichskleinodien erläutert, die Leseart desselben von Tyehsen und Frähn?) berichtiget worden, aber die Übersetzer dieser Inschrift haben nieht geahnt, dass dieselbe im Morgen-lande ein ‚Souverainitätsrecht der Herrscher sei; andererseits sind die Tücher türkischer und griechischer Frauen mit gedruckten oder gestiekten Inschriften durch den Handel mit der Levante wenigstens in Wien bekannt genug, ohne dass irgend wo über diese uralte arabische Mode etwas Näheres verlautet hat; über jenes Souverainitätsrecht morgenländischer Herrscher und dieses Vorreeht","year":1848,"readers":0,"url":"AC15195186","link":"http://hdl.handle.net/21.11115/0000-000C-C738-5","published_in":"","oa_state":1,"subject_orig":"Orient; Frau; Kleidung; Souveränität; Geschichte; Arabisch; Inschrift","relevance":80,"bkl_caption":"Diplomatik. Epigraphik; Arabische Sprache und Literatur","bkl_top_caption":"Geschichte; Einzelne Sprachen und Literaturen","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000001099999993,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15195186","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C738-5","outlink":"https://permalink.obvsg.at/AC15195186","comments_for_filtering":"","resized":false},{"id":"AC15195304","subject":"Araber; Soziale Klasse","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Abhandlung über die Menschenclasse, welche von den Arabern 'Schoubije' genannt wird","paper_abstract":"Der Herr Präsident, Freiherr von Hammer-Purgstall, liest folgende Abhandlung: Über die Menschenclasse, welehe von den Arabern „Schoubije” genannt wird. Um die Bedeutung, in welcher das Wort Schoubije von den Arabern gebraucht wird, gehörig zu verstehen, ist es durchaus nothwendig bis zur Wurzelbedeutung des Wortes Sehoub zurück zu gehen und Einiges über die genealogischen Ansichten und Stamm-Eintheilungen der Araber vorauszuschicken. Der grosse Gegensatz des Morgen-und Abendlandes, der sich im Grössten wie im Kleinsten durchaus ausspricht, bewährt sich auch in dem Bilde ihrer Geıschlechtsableitung. Der Abendländer versinnlichet dieselbe durch einen Baum, dessen Wurzel der zuerst bekannte Gründer des Geschlechtes ist. Aus ihm erhebt sich der Stamm, der sich in Äste verzweigt und seine Sprossen von allen Seiten in die Luft emportreibt. Die Terminologie des europäischen Genealogen kennt nur die vom Baume hergenommenen Benennungen der Wurzel des Stammes, der Zweige und der Nebenzweige ","year":1848,"readers":0,"url":"AC15195304","link":"http://hdl.handle.net/21.11115/0000-000C-C73B-2","published_in":"","oa_state":1,"subject_orig":"Araber; Soziale Klasse","relevance":79,"bkl_caption":"Vorderer und mittlerer Orient; Sozialgeschichte","bkl_top_caption":"Geschichte; Geschichte","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000001199999993,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15195304","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C73B-2","outlink":"https://permalink.obvsg.at/AC15195304","comments_for_filtering":"","resized":false},{"id":"AC15195568","subject":"Kaiserliche Akademie der Wissenschaften in Wien; Schriftverkehr; Titulatur; Abschaffung; Antrag; Geschichte 1848","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Antrag auf Abschaffung der Titulaturen im schriftlichen Verkehre der Akademie","paper_abstract":"Im Auslande. Agassiz B., Professor zu Genf; Bischoff Theodor Ludwig Wilhelm, Professor an der Universität zu Giessen; Agassiz B., Professor zu Genf; Dove Heinrich Wilhelm, Professor und Akademiker zu Berlin; Bischoff Theodor Ludwig Wilhelm, Professor an der Universität zu Giessen; Edwards Henri-Milne, Professor und Akademiker zu Paris; Dove Heinrich Wilhelm, Professor und Akademiker zu Berlin; Ehrenberg Christian Gottfried, Akademiker zu Berlin; Edwards Henri-Milne, Professor und Akademiker zu Paris; Fuchs Johann Nep., königl. bairischer Hofrath und Akademiker zu München; Ehrenberg Christian Gottfried, Akademiker zu Berlin; Gmelin Leopold, grossherzoglich Baden’scher Hofrath und Professor der Chemie zu Heidelberg; Fuchs Johann Nep., königl. bairischer Hofrath und Akademiker zu München; Grunert Johann August, Professor an der Universität zu Greifswald; Gmelin Leopold, grossherzoglich Baden’scher Hofrath und Professor der Chemie zu Heidelberg; Mädler D. J. H., kaiserlich russischer Staat","year":1848,"readers":0,"url":"AC15195568","link":"http://hdl.handle.net/21.11115/0000-000C-C741-A","published_in":"","oa_state":1,"subject_orig":"Kaiserliche Akademie der Wissenschaften in Wien; Schriftverkehr; Titulatur; Abschaffung; Antrag; Geschichte 1848","relevance":78,"bkl_caption":"Schweiz. Österreich-Ungarn. Österreich","bkl_top_caption":"Geschichte","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000001299999992,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15195568","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C741-A","outlink":"https://permalink.obvsg.at/AC15195568","comments_for_filtering":"","resized":false},{"id":"AC15196871","subject":"Arabisch; Literatur; Geschichte","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Uebersicht der Geschichte der arabischen Literatur (Fortsetzung)","paper_abstract":"so habe es doch so viel Interesse, wie eben die darauf verwandte - Sorge des berühmten Professors Luzzato schon beweise, die ihm eben durch diesen Gelehrten zu Theil gewordene Ausstattung mit Vorwort und Anmerkungen seien so berücksichtigungswerth, dass das Vorhaben des Herrn Dr. Letteris jedenfalls ein verdienstliches und einer Unterstützung der Akademie würdiges sei, und bei dem geringen Umfange des Werkes ohnehin keine bedeutende Auslage verursachen werde. In Folge dieses Berichtes beschloss die Classe, sich bei der Gesammt-Akademie zu verwenden, dass Herrn Dr. Letteris dazu ein Unterstützungsbeitrag von 50 fl. C. M. bewilliget werde. Der Präsident Freiherr Hammer-Purgstall setzt die Lesung seiner Uebersicht der Geschichte der arabischen Literatur fort. Das tausendste Jahr der Hidschret war in den Ländern des Islams durch den Volksaberglauben ein eben so gefürchtetes, als das tausendste Jahr der christlichen Zeitrechnung. Der Glaube an ‚das Ende der Welt brachte eine allgemeine ","year":1849,"readers":0,"url":"AC15196871","link":"http://hdl.handle.net/21.11115/0000-000C-C78E-4","published_in":"","oa_state":1,"subject_orig":"Arabisch; Literatur; Geschichte","relevance":77,"bkl_caption":"Arabische Sprache und Literatur; Literaturgeschichte","bkl_top_caption":"Einzelne Sprachen und Literaturen; Sprach- und Literaturwissenschaft","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000001399999991,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15196871","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C78E-4","outlink":"https://permalink.obvsg.at/AC15196871","comments_for_filtering":"","resized":false},{"id":"AC15197111","subject":"Arabisch; Literatur; Geschichte","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Uebersicht der arabischen Literatur (Schluss)","paper_abstract":"Der Herr Präsident Freiherr Hammer-Purgstall beschliesst die Lesung seiner Uebersicht der Geschichte der arabischen Literatur. Am Schlusse des letzten Zeitraumes arabischer Literaturgeschichte stehen noch ein Paar Geschichtschreiber und ein Paar gelehrte Mufti und der letzte grosse Gross-Vesir des osmanischen Reiches, der Verfasser des arabischen Werkes welches den Titel: „das Schiff der Wissenschaft” führt. Von dem Zustande arabischer Literatur in Persien im verflossenen Jahrhunderte wüsste man gar nichts ohne die von Belfour herausgegebene Selbstbiographie des gelehrten Schech Mohammed el Hassin. Man sieht daraus, dass in Persien keine andern Grundwerke arabischer Studien gang und gäbe als in der Türkei. Einen merkwürdigen Abschnitt bildet die Einführung der Buchdruckerei zu Constantinopel vor 120 Jahren, nur bezeichnet sie nicht den Aufschwung sondern den Rückschritt arabischer Literatur, besonders seit ihrer Einführung in Aegypten, wo fast mehr Uebersetzungen europäischer Werke al","year":1849,"readers":0,"url":"AC15197111","link":"http://hdl.handle.net/21.11115/0000-000C-C794-C","published_in":"","oa_state":1,"subject_orig":"Arabisch; Literatur; Geschichte","relevance":76,"bkl_caption":"Arabische Sprache und Literatur; Literaturgeschichte","bkl_top_caption":"Einzelne Sprachen und Literaturen; Sprach- und Literaturwissenschaft","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.000000149999999,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15197111","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-C794-C","outlink":"https://permalink.obvsg.at/AC15197111","comments_for_filtering":"","resized":false},{"id":"AC15093982","subject":"Orient; Literaturwissenschaft; Nachschlagewerk","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Über die Encyklopädie der Araber, Perser und Türken","paper_abstract":"Gelesen: Freiherr Hammer-Purgstall las eine Abhandlung für die Denkschriften über die Eneyklopädie der Araber, Perser und Türken. Nach Vollendung der „Geschichte der Ilchane Persiens“ wollte er eine verbesserte und vermehrte Ausgabe seiner encyklopädischen Übersicht der Wissenschaften des Orients geben und begann eine Umarbeitung dieses Werkes, womit er zuerst im Aufange dieses Jahrhunderts unter den Orientalisten aufgetreten; da sich aber in der Folge der Arbeit bald herausstellte, dass eine vollständige Literaturgeschichte der Araber ein weit grösseres Bedürfniss für die orientalische Literatur in Europa, als eine umgearbeitete vermehrte Ausgabe der Übersieht der Wissenschaften des’ Orients sei, so liess er jene Arbeit liegen und begann die Literaturgeschichte der Araber, von der bis jetzt sechs Quartbände (die Hälfte des auf zwölf berechneten Ganzen) erschienen sind. Er legt nun der Classe die Einleitung jener aus zwei früher nicht gekannten und unbenützten eneyklopädischen Quelle","year":1855,"readers":0,"url":"AC15093982","link":"http://hdl.handle.net/21.11115/0000-000C-CA40-8","published_in":"","oa_state":1,"subject_orig":"Orient; Literaturwissenschaft; Nachschlagewerk","relevance":75,"bkl_caption":"Sprachwissenschaft: Allgemeines","bkl_top_caption":"Sprach- und Literaturwissenschaft","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.000000159999999,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15093982","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-CA40-8","outlink":"https://permalink.obvsg.at/AC15093982","comments_for_filtering":"","resized":false},{"id":"AC15094179","subject":"Salzenberg, Wilhelm; 1803-1887; Konstantinopel; Christliche Kunst; Baudenkmal","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Über die alt-christlichen Baudenkmäler Constantinopels von Salzenberg","paper_abstract":"Gelesen: Über das auf Kosten Sr. Majestät des Königs von Preussen herausgegebene Werk: „Die alt-chrisilichen Baudenkmäler Constantinopels von Salzenberg.“ Von dem w. M., Dr. Freiherrn Hammer-Purgstall. Se. Majestät der König von Preussen, ein grosser Schutzherr der Wissenschaft und Kunst, ein Beförderer beider durch herrliche Werke die ohne höhere Unterstützung ihr Dasein nicht fristen könnten, ein Gönner der Gelehrten und Künstler durch gewährten Lebensunterhalt und durch zuerkannte ehrenvolle Auszeichnung ihres Verdienstes , hat schon vor einiger Zeit der hiesigen Hofbibliothek die Prachtausgabe der Werke seines grossen Ahnherrn Friedrichs II., dann der kaiserlichen Akademie der Wissenschaften die von Lepsius herausgegebenen ägyptischen und äthiopischen Denkmäler 1) und neuerdings dem Verfasser der Geschichte des osmanischen Reiches das Prachtwerk der alt-christlichen Baudenkmale Constantinopels ?) als Geschenk zu senden geruht. Schon durch das Gefühl der Dankbarkeit allein für ","year":1855,"readers":0,"url":"AC15094179","link":"http://hdl.handle.net/21.11115/0000-000C-CA21-B","published_in":"","oa_state":1,"subject_orig":"Salzenberg, Wilhelm; 1803-1887; Konstantinopel; Christliche Kunst; Baudenkmal","relevance":74,"bkl_caption":"Geschichte der Sakralbaukunst","bkl_top_caption":"Einzelne Kunstformen","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.000000169999999,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15094179","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-CA21-B","outlink":"https://permalink.obvsg.at/AC15094179","comments_for_filtering":"","resized":false},{"id":"AC15094267","subject":"Orient; Literaturwissenschaft; Nachschlagewerk","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Über die Encyklopädie der Araber, Perser und Türken (Schluss)","paper_abstract":"Gelesen: Freiherr Hammer-Purgstall liest den Schluss der ersten Abtheilung seines über die Eneyklopädie der Araber, Perser und Türken für die Denkschriften der kais. Akademie der Wissenschaften gelieferten Aufsatzes mit Auszügen aus der Anthologie des Spaniers ibn Äbd Rebbihi welcher schon im Jahre 328 (939) gestorben. Dieser handelt in zwölf Abschnitten: 1. von der Kenntniss (fen), verwandt mit dem englischen fonn, und der Wissenschaft (im) ; 3. von der Vortrefflichkeit der Wissenschaft; 3. von der Besitznahme und der Befestigung darin; 4. von der Anmassung fremder Wissenschaft; 5. von den Bedingnissen der Wissenschaft; 6. von der Bewahrung der Wissenschaft und ihrem Gebrauche; 7. von der Aufhebung der Wissenschaft; 8. von der Art und Weise wie der Wissende den Unwissenden erträgt; 9. von der Beehrung der Gelehrten ; 10. von den schwer zu verstehenden Lehrsätzen; 11.von dem fehlerhaften Lesen und Schreiben; 12. von dem Streben der Wissenschaft zu einem andern Ziele als Gott. Im zwei","year":1855,"readers":0,"url":"AC15094267","link":"http://hdl.handle.net/21.11115/0000-000C-CA43-5","published_in":"","oa_state":1,"subject_orig":"Orient; Literaturwissenschaft; Nachschlagewerk","relevance":73,"bkl_caption":"Sprachwissenschaft: Allgemeines","bkl_top_caption":"Sprach- und Literaturwissenschaft","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.000000179999999,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15094267","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-CA43-5","outlink":"https://permalink.obvsg.at/AC15094267","comments_for_filtering":"","resized":false},{"id":"AC15094631","subject":"Osmanisches Reich; Geschichtsschreibung","authors":"Hammer-Purgstall, Joseph <<von>>","title":"Bericht über die Fortsetzung des Druckes der osmanischen Reichsgeschichte zu Konstantinopel","paper_abstract":"Gelesen: Bericht über die. Fortsetzung des Druckes der osmanischen Reichsgeschichte zu Konstantinopel. Von dem w. M., Dr. Freiherrn Hammer-Purgstall. Vor einem halben Jahrhundert, d.i. im Jahre 1804 des laufenden Jahrhunderts erschien zu Konstantinopel die letzte gedruckte Reichsgeschichte, nämlich die des Reichsgeschichtsschreibers Walsif als die Fortsetzung der früher gedruckten Naima’s, Raschid’s, Kara Tsehelebilade's, Ilis und Ssubhi’s, welche den Zeitraum v. J. d. H. 1001 (1592) bis ins J. d. H. 1187 (1773) umfasst, d. i. bis ins Jahr vor dem Frieden von Kainardschi (richtiger Kainardsche) t) geht und zwei dünne Foliobände stark; die Fortsetzung beginnt unmittelbar nach dem Frieden von Kainardsche, d. i. mit Ende des J.d.H.1188 (177%) und endetmit dem Tode des Königs von Preussen, d.i. mit dem zweiten Jahrhundert der Hidschret i. J. 1787 unmittelbar vor Ausbruche des Krieges mit Russland und Österreich, zwei Bände Gross-Octav oder Klein-Quart, der erste von 361 und der zweite vo","year":1855,"readers":0,"url":"AC15094631","link":"http://hdl.handle.net/21.11115/0000-000C-CA5B-B","published_in":"","oa_state":1,"subject_orig":"Osmanisches Reich; Geschichtsschreibung","relevance":72,"bkl_caption":"Türkei","bkl_top_caption":"Geschichte","area":"Kein Bereich","file_hash":"hashHash","x":"1.00000000","y":1.0000001899999988,"comments":[],"authors_string":"Hammer-Purgstall, Joseph <<von>>","authors_short_string":"Hammer-Purgstall, J. ","safe_id":"AC15094631","num_readers":0,"internal_readers":1,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/21.11115/0000-000C-CA5B-B","outlink":"https://permalink.obvsg.at/AC15094631","comments_for_filtering":"","resized":false}]`;
-export default JSON.parse(data);
+const rawData = JSON.parse(data);
+rawData.forEach((paper) => {
+ paper.resulttype = [];
+ paper.classification = paper.bkl_caption ? paper.bkl_caption : "";
+ paper.keywords = paper.subject_orig;
+ paper.list_link = { address: paper.link, isDoi: false };
+ paper.tags = [];
+});
+
+export default rawData;
diff --git a/vis/test/data/local-files.js b/vis/test/data/local-files.js
index d9e96a0ca..e81a539fb 100644
--- a/vis/test/data/local-files.js
+++ b/vis/test/data/local-files.js
@@ -1,3 +1,11 @@
const data = `[{"id":"1a015a70-6d03-11df-a2b2-0026b95e3eb7","title":"A framework to analyze argumentative knowledge construction in computer-supported collaborative learning","readers":91,"x":"-0.50740831","y":"-1.06130380","area":"Computer-supported Collaborative Learning","paper_abstract":"Computer-supported collaborative learning (CSCL) is often based on written argumentative discourse of learners, who discuss their perspectives on a problem with the goal to acquire knowledge. Lately, CSCL research focuses on the facilitation of specific processes of argumentative knowledge construction, e.g., with computer-supported collaboration scripts. In order to refine process-oriented instructional support, such as scripts, we need to measure the influence of scripts on specific processes of argumentative knowledge construction. In this article, we propose a multi-dimensional approach to analyze argumentative knowledge construction in CSCL from sampling and segmentation of the discourse corpora to the analysis of four process dimensions (participation, epistemic, argumentative, social mode).","published_in":"Computers & Education","year":"2006","url":"a-framework-to-analyze-argumentative-knowledge-construction-in-computersupported-collaborative-learning","file_hash":"978018f69b3e27b930a6de719bc8f285f2295793","authors":"Weinberger,A;Fischer,F;","oa_state":"0","comments":[],"subject_orig":"","authors_string":"A Weinberger, F Fischer","authors_short_string":"A. Weinberger, F. Fischer","safe_id":"1a015a70__002d6d03__002d11df__002da2b2__002d0026b95e3eb7","num_readers":91,"internal_readers":92,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"outlink":"http://mendeley.com/catalog/a-framework-to-analyze-argumentative-knowledge-construction-in-computersupported-collaborative-learning","comments_for_filtering":"","resized":false},{"id":"bc8fff40-6d02-11df-a2b2-0026b95e3eb7","title":"A survey of current research on online communities of practice","readers":156,"x":"-0.74155868","y":"0.64317916","area":"Community of Practice","paper_abstract":"The author surveys current literature on communities of practice and their potential development using networked technology and remote collaboration, specifically with respect to World Wide Web (WWW) communication tools. The vast majority of the current literature in this new research area consists of case studies. Communities of practice have the following components that distinguish them from traditional organizations and learning situations: (1) different levels of expertise that are simultaneously present in the community of practice; (2) fluid peripheral to center movement that symbolizes the progression from being a novice to an expert; and (3) completely authentic tasks and communication. Supporting concepts include aspects of constructivism (i.e., ill-structured problems, facilitation, collaborative learning, and negotiated goals), community knowledge greater than individual knowledge, as well as an environment of safety and trust. Virtual communities are defined as designed communities using current networked technology, whereas communities of practice emerge within the designed community via the ways their participants use the designed community. Current networked technology has both advantages and disadvantages in emergent development of communities of practice. Because most collaboration is text-based, norms are reduced, enabling introverted participants to share their ideas on an equal footing with extroverts. However, the greatest problem with virtual communities is withdrawing, or attrition. This problem can be reduced somewhat through good facilitation techniques and adequate scaffolding, especially in the cases of online communication techniques and technical support. Finally, the author recommends further research questions and proposes a case study, whose purpose is to observe the effects of an emerging community of practice within the designed environment of a virtual community.","published_in":"The Internet and Higher Education","year":"2001","url":"a-survey-of-current-research-on-online-communities-of-practice","file_hash":"57f25a1f63055eaf4cc1348ab070d9a6574acc00","authors":"Johnson,C;","oa_state":"1","comments":[],"subject_orig":"","authors_string":"C Johnson","authors_short_string":"C. Johnson","safe_id":"bc8fff40__002d6d02__002d11df__002da2b2__002d0026b95e3eb7","num_readers":156,"internal_readers":157,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"outlink":"http://mendeley.com/catalog/a-survey-of-current-research-on-online-communities-of-practice","comments_for_filtering":"","resized":false},{"id":"adae2ec0-6d02-11df-a2b2-0026b95e3eb7","title":"A theory of online learning as online participation","readers":58,"x":"0.41049735","y":"1.75826161","area":"Online Learning and Technology Adoption","paper_abstract":"In this paper, an initial theory of online learning as online participation is suggested. It is argued that online learner participation (1) is a complex process of taking part and maintaining relations with others, (2) is supported by physical and psychological tools, (3) is not synonymous with talking or writing, and (4) is supported by all kinds of engaging activities. Participation and learning are argued to be inseparable and jointly constituting. The implication of the theory is straightforward: If we want to enhance online learning, we need to enhance online learner participation.","published_in":"Computers & Education","year":"2009","url":"a-theory-of-online-learning-as-online-participation","file_hash":"70008455a87e20764ea07c5d6698798084ea3943","authors":"Hrastinski,Stefan;","oa_state":"0","comments":[],"subject_orig":"","authors_string":"Stefan Hrastinski","authors_short_string":"S. Hrastinski","safe_id":"adae2ec0__002d6d02__002d11df__002da2b2__002d0026b95e3eb7","num_readers":58,"internal_readers":59,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"outlink":"http://mendeley.com/catalog/a-theory-of-online-learning-as-online-participation","comments_for_filtering":"","resized":false},{"id":"2caa2890-6d04-11df-a2b2-0026b95e3eb7","title":"Augmented Reality Simulations on Handheld Computers","readers":81,"x":"-2.10267851","y":"-0.91081109","area":"Game-based Learning","paper_abstract":"Advancements in handheld computing, particularly its portability, social interactivity, context sensitivity, connectivity, and individuality, open new opportunities for immersive learning environments. This article articulates the pedagogical potential of augmented reality simulations in environmental engineering education by immersing students in the roles of scientists conducting investigations. This design experiment examined if augmented reality simulation games can be used to help students understand science as a social practice, whereby inquiry is a process of balancing and managing resources, combining multiple data sources, and forming and revising hypotheses in situ. We provide 4 case studies of secondary environmental science students participating in the program. Positioning students in virtual investigations made apparent their beliefs about science and confronted simplistic beliefs about the nature of science. Playing the game in 'real' space also triggered students' preexisting knowledge, suggesting that a powerful potential of augmented reality simulation games can be in their ability to connect academic content and practices with students' physical, lived worlds. The game structure provided students a narrative to think with, although students differed in their ability to create a coherent narrative of events. We argue that Environmental Detectives is 1 model for helping students understand the socially situated nature of scientific practice.","published_in":"The Journal of the Learning Sciences","year":"2007","url":"augmented-reality-simulations-on-handheld-computers","file_hash":"a4f308580a53de5aff759f67943b435fb217a038","authors":"Squire,Kurt;Klopfer,Eric;","oa_state":"1","comments":[],"subject_orig":"","authors_string":"Kurt Squire, Eric Klopfer","authors_short_string":"K. Squire, E. Klopfer","safe_id":"2caa2890__002d6d04__002d11df__002da2b2__002d0026b95e3eb7","num_readers":81,"internal_readers":82,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"outlink":"http://mendeley.com/catalog/augmented-reality-simulations-on-handheld-computers","comments_for_filtering":"","resized":false},{"id":"f7d185b0-6d02-11df-a2b2-0026b95e3eb7","title":"Blended learning: Uncovering its transformative potential in higher education","readers":124,"x":"0.32231349","y":"2.46428555","area":"The Future of Learning","paper_abstract":"The purpose of this paper is to provide a discussion of the transformative potential of blended learning in the context of the challenges facing higher education. Based upon a description of blended learning, its potential to support deep and meaningful learning is discussed. From here, a shift to the need to rethink and restructure the learning experience occurs and its transformative potential is analyzed. Finally, administrative and leadership issues are addressed and the outline of an action plan to implement blended learning approaches is presented. The conclusion is that blended learning is consistent with the values of traditional higher education institutions and has the proven potential to enhance both the effectiveness and efficiency of meaningful learning experiences.","published_in":"The Internet and Higher Education","year":"2004","url":"blended-learning-uncovering-transformative-potential-higher-education-1","file_hash":"bd88d81f276380b0c69cbcec6968c1c49d685018","authors":"Garrison,D;Kanuka,H;","oa_state":"0","comments":[],"subject_orig":"","authors_string":"D Garrison, H Kanuka","authors_short_string":"D. Garrison, H. Kanuka","safe_id":"f7d185b0__002d6d02__002d11df__002da2b2__002d0026b95e3eb7","num_readers":124,"internal_readers":125,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"outlink":"http://mendeley.com/catalog/blended-learning-uncovering-transformative-potential-higher-education-1","comments_for_filtering":"","resized":false},{"id":"2251fee0-6d04-11df-a2b2-0026b95e3eb7","title":"Cognitive Architecture and Instructional Design","readers":198,"x":"0.81934945","y":"-2.50868702","area":"Cognitive Models","paper_abstract":"Cognitive load theory has been designed to provide guidelines intended to assist in the presentation of information in a manner that encourages learner activities that optimize intellectual performance. The theory assumes a limited capacity working memory that includes partially independent subcomponents to deal with auditory/verbal material and visual/2- or 3-dimensional information as well as an effectively unlimited long-term memory, holding schemas that vary in their degree of automation. These structures and functions of human cognitive architecture have been used to design a variety of novel instructional procedures based on the assumption that working memory load should be reduced and schema construction encouraged. This paper reviews the theory and the instructional designs generated by it.","published_in":"Educational Psychology Review","year":"1998","url":"cognitive-architecture-instructional-design-1","file_hash":"122522a10ba897644e8a0af75e86ccb75464ae3e","authors":"Sweller,John;Merrienboer,Jeroen J G Van;Paas,Fred G W C;","oa_state":"1","comments":[],"subject_orig":"","authors_string":"John Sweller, Jeroen J G Van Merrienboer, Fred G W C Paas","authors_short_string":"J. Sweller, J. Merrienboer, F. Paas","safe_id":"2251fee0__002d6d04__002d11df__002da2b2__002d0026b95e3eb7","num_readers":198,"internal_readers":199,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"outlink":"http://mendeley.com/catalog/cognitive-architecture-instructional-design-1","comments_for_filtering":"","resized":false},{"id":"2a300830-6d01-11df-a2b2-0026b95e3eb7","title":"Cognitive load during problem solving: Effects on learning","readers":199,"x":"0.73236548","y":"-2.19185823","area":"Cognitive Models","paper_abstract":"Considerable evidence indicates that domain specific knowledge in the form of schemas is the primary factor distinguishing experts from novices in problem-solving skill. Evidence that conventional problem-solving activity is not effective in schema acquisition is also accumulating. It is suggested that a major reason for the ineffectiveness of problem solving as a learning device, is that the cognitive processes required by the two activities overlap insufficiently, and that conventional problem solving in the form of means-ends analysis requires a relatively large amount of cognitive processing capacity which is consequently unavailable for schema acquisition. A computational model and experimental evidence provide support for this contention. Theoretical and practical implications are discussed.","published_in":"Cognitive Science","year":"1988","url":"cognitive-load-during-problem-solving-effects-on-learning","file_hash":"158ee80e712910bf80003fb8975d3544a4cbbe51","authors":"Sweller,J;","oa_state":"0","comments":[],"subject_orig":"","authors_string":"J Sweller","authors_short_string":"J. Sweller","safe_id":"2a300830__002d6d01__002d11df__002da2b2__002d0026b95e3eb7","num_readers":199,"internal_readers":200,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"outlink":"http://mendeley.com/catalog/cognitive-load-during-problem-solving-effects-on-learning","comments_for_filtering":"","resized":false},{"id":"a46f4880-2f3a-11e0-bce8-0024e8453de6","title":"Communities of Practice: Learning, Meaning, and Identity","readers":232,"x":"-0.94773767","y":"0.11023034","area":"Community of Practice","paper_abstract":"This book presents a theory of learning that starts with the assumption that engagement in social practice is the fundamental process by which we get to know what we know and by which we become who we are. The primary unit of analysis of this process is neither the individual nor social institutions, but the informal 'communities of practice' that people form as they pursue shared enterprises over time. To give a social account of learning, the theory explores in a systematic way the intersection of issues of community, social practice, meaning, and identity. The result is a broad framework for thinking about learning as a process of social participation. This ambitious but thoroughly accessible framework has relevance for the practitioner as well as the theoretician, presented with all the breadth, depth, and rigor necessary to address such a complex and yet profoundly human topic.","published_in":"Learning in doing","year":"1998","url":"communities-practice-learning-meaning-identity-19","file_hash":"8e0bd9debb0836aa5d77f18d19d893181edf21a5","authors":"Wenger,Etienne;","oa_state":"1","comments":[],"subject_orig":"","authors_string":"Etienne Wenger","authors_short_string":"E. Wenger","safe_id":"a46f4880__002d2f3a__002d11e0__002dbce8__002d0024e8453de6","num_readers":232,"internal_readers":233,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"outlink":"http://mendeley.com/catalog/communities-practice-learning-meaning-identity-19","comments_for_filtering":"","resized":false},{"id":"60183130-6d00-11df-a2b2-0026b95e3eb7","title":"Computer-supported collaborative learning: An historical perspective","readers":172,"x":"-0.36275729","y":"0.48498445","area":"Computer-supported Collaborative Learning","paper_abstract":"Computer-supported collaborative learning (CSCL) is an emerging branch of the learning sciences concerned with studying how people can learn together with the help of computers. As we will see in this essay, such a simple statement conceals considerable complexity. The interplay of learning with technology turns out to be quite intricate. The inclusion of collaboration, computer mediation and distance education has problematized the very notion of learning and called into question prevailing assumptions about how to study it. Like many active fields of scientific research, CSCL has a complex relationship to established disciplines, evolves in ways that are hard to pinpoint and includes important contributions that seem incompatible. The field of CSCL has a long history of controversy about its theory, methods and definition. Furthermore, it is important to view CSCL as a vision of what may be possible with computers and of what kinds of research should be conducted, rather than as an established body of broadly accepted laboratory and classroom practices. We will start from some popular understandings of the issues of CSCL and gradually reveal its more complex nature. We will review CSCLs historical development and offer our perspective on its future.","published_in":"Cambridge handbook of the learning sciences","year":"2006","url":"computersupported-collaborative-learning-an-historical-perspective","file_hash":"8b5337265624c3eeaa6d0268e74a02de805dea92","authors":"Stahl,Gerry;Koschmann,Timothy;Suthers,Dan;","oa_state":"0","comments":[],"subject_orig":"","authors_string":"Gerry Stahl, Timothy Koschmann, Dan Suthers","authors_short_string":"G. Stahl, T. Koschmann, D. Suthers","safe_id":"60183130__002d6d00__002d11df__002da2b2__002d0026b95e3eb7","num_readers":172,"internal_readers":173,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"outlink":"http://mendeley.com/catalog/computersupported-collaborative-learning-an-historical-perspective","comments_for_filtering":"","resized":false},{"id":"dc7219d0-6d0a-11df-a2b2-0026b95e3eb7","title":"Confronting the Challenges of Participatory Culture: Media Education for the 21 Century","readers":195,"x":"-0.46344124","y":"1.98919403","area":"Digital Natives","paper_abstract":"According to a recent study from the Pew Internet & American Life project (Lenhardt & Madden,2005),more than one-half of all teens have created media content,and roughly one- third of teens who use the Internet have shared content they produced.In many cases,these teens are actively involved in what we are calling participatory cultures.A participatory culture is a culture with relatively low barriers to artistic expression and civic engagement,strong support for creating and sharing ones creations,and some type of informal mentorship whereby what is known by the most experienced is passed along to novices.A participatory culture is also one in which members believe their contributions matter,and feel some degree of social con- nection with one another (at the least they care what other people think about what they have created).Forms of participatory culture include: Affiliations memberships,formal and informal,in online communities centered around various forms of media,such as Friendster,Facebook,message boards, metagaming,game clans,or MySpace). Expressions producing new creative forms,such as digital sampling,skinning and modding,fan videomaking,fan fiction writing,zines,mash-ups). Collaborative Problem-solving working together in teams,formal and informal, to complete tasks and develop new knowledge (such as through Wikipedia,alternative reality gaming,spoiling). Circulations Shaping the flow of media (such as podcasting,blogging). A growing body of scholarship suggests potential benefits of these forms of participatory cul- ture,including opportunities for peer-to-peer learning,a changed attitude toward intellectual property,the diversification of cultural expression,the development of skills valued in the mod- ern workplace,and a more empowered conception of citizenship. Access to this participatory culture functions as a new form of the hidden curriculum,shaping which youth will succeed and which will be left behind as they enter school and the workplace. Some have argued that children and youth acquire these key skills and competencies on their own by interacting with popular culture.Three concerns,however,suggest the need for policy and pedagogical interventions: The Participation Gap the unequal access to the knowledge that will prepare youth for full participation in the world of tomorrow. The Transparency Problem The challenges young people face in learning to see clearly the ways that media shape perceptions of the world. The Ethics Challenge The breakdown of traditional forms of professional training and socialization that might prepare young people for their increasingly public roles as media makers and community participants.","published_in":"Program","year":"2009","url":"confronting-the-challenges-of-participatory-culture-media-education-for-the-21st-century-2","file_hash":"c82d964c7724a7cf9c6eed112d64e4cd0fb4ec2a","authors":"Jenkins,Henry;","oa_state":"1","comments":[],"subject_orig":"","authors_string":"Henry Jenkins","authors_short_string":"H. Jenkins","safe_id":"dc7219d0__002d6d0a__002d11df__002da2b2__002d0026b95e3eb7","num_readers":195,"internal_readers":196,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"outlink":"http://mendeley.com/catalog/confronting-the-challenges-of-participatory-culture-media-education-for-the-21st-century-2","comments_for_filtering":"","resized":false},{"id":"fb18a0c0-6d0a-11df-a2b2-0026b95e3eb7","title":"Connectivism: Learning theory of the future or vestige of the past?","readers":76,"x":"1.46840812","y":"2.01566163","area":"Personal Learning Environment","paper_abstract":"Siemens and Downes initially received increasing attention in the blogosphere in 2005 when they discussed their ideas concerning distributed knowledge. An extended discourse has ensued in and around the status of connectivism as a learning theory for the digital age. This has led to a number of questions in relation to existing learning theories. Do they still meet the needs of todays learners, and anticipate the needs of learners of the future? Would a new theory that encompasses new developments in digital technology be more appropriate, and would it be suitable for other aspects of learning, including in the traditional class room, in distance education and e-learning? This paper will highlight current theories of learning and critically analyse connectivism within the context of its predecessors, to establish if it has anything new to offer as a learning theory or as an approach to teaching for the 21st Century.","published_in":"International Review of Research in Open and Distance Learning","year":"2008","url":"connectivism-learning-theory-of-the-future-or-vestige-of-the-past","file_hash":"f1a7fb899c7617541eb86ea00b19c87b797b9ed1","authors":"Kop,Rita;Hill,Adrian;","oa_state":"0","comments":[],"subject_orig":"","authors_string":"Rita Kop, Adrian Hill","authors_short_string":"R. Kop, A. Hill","safe_id":"fb18a0c0__002d6d0a__002d11df__002da2b2__002d0026b95e3eb7","num_readers":76,"internal_readers":77,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"outlink":"http://mendeley.com/catalog/connectivism-learning-theory-of-the-future-or-vestige-of-the-past","comments_for_filtering":"","resized":false},{"id":"109bedd0-6d06-11df-a2b2-0026b95e3eb7","title":"Critical Inquiry in a Text-Based Environment: Computer Conferencing in Higher Education","readers":86,"x":"0.55640841","y":"1.42240128","area":"Online Learning and Technology Adoption","paper_abstract":"The purpose of this study is to provide conceptual order and a tool for the use of computer-mediated communication (CMC) and computer conferencing in supporting an educational experience. Central to the study introduced here is a model of community inquiry that constitutes three elements essential to an educational transactioncognitive presence, social presence, and teaching presence. Indicators (key words/phrases) for each of the three elements emerged from the analysis of computer-conferencing transcripts. The indicators described represent a template or tool for researchers to analyze written transcripts, as well as a guide to educators for the optimal use of computer conferencing as a medium to facilitate an educational transaction. This research would suggest that computer conferencing has considerable potential to create a community of inquiry for educational purposes.","published_in":"The Internet and Higher Education","year":"1999","url":"critical-inquiry-in-a-textbased-environment-computer-conferencing-in-higher-education-1","file_hash":"4640e32204fc54bf2ef1d527e53c1287312b0cc3","authors":"Garrison,D Randy;Anderson,Terry;Archer,Walter;","oa_state":"1","comments":[],"subject_orig":"","authors_string":"D Randy Garrison, Terry Anderson, Walter Archer","authors_short_string":"D. Garrison, T. Anderson, W. Archer","safe_id":"109bedd0__002d6d06__002d11df__002da2b2__002d0026b95e3eb7","num_readers":86,"internal_readers":87,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"outlink":"http://mendeley.com/catalog/critical-inquiry-in-a-textbased-environment-computer-conferencing-in-higher-education-1","comments_for_filtering":"","resized":false},{"id":"f35b2ab0-6d00-11df-8e55-0026b95e43ca","title":"Cultivating communities of practice: A guide to managing knowledge","readers":125,"x":"-0.88893603","y":"0.41008598","area":"Community of Practice","paper_abstract":"Today's marketplace is fueled by knowledge, but technology is not enough. Cultivating communities of practice is the keystone of effective knowledge strategy. This book provides practical models and methods for stewarding these communities to reach their full potential-without squelching the inner drive that makes them so valuable. Essential reading for any leader in today's knowledge economy; the definitive guide to developing communities of practice!","published_in":"Harvard Business School Press Books","year":"2002","url":"cultivating-communities-practice-guide-managing-knowledge-1","file_hash":"7b639de6effa686dc2ca7cd17d8b1550e5061533","authors":"Wenger,Etienne;McDermott,Richard;Snyder,William;","oa_state":"0","comments":[],"subject_orig":"","authors_string":"Etienne Wenger, Richard McDermott, William Snyder","authors_short_string":"E. Wenger, R. McDermott, W. Snyder","safe_id":"f35b2ab0__002d6d00__002d11df__002d8e55__002d0026b95e43ca","num_readers":125,"internal_readers":126,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"outlink":"http://mendeley.com/catalog/cultivating-communities-practice-guide-managing-knowledge-1","comments_for_filtering":"","resized":false},{"id":"6f7488e0-6d00-11df-a2b2-0026b95e3eb7","title":"Design-based research and technology-enhanced learning environments","readers":100,"x":"-1.57662268","y":"-2.23654126","area":"Design-based Research","paper_abstract":"During the past decade, design-based research has demonstrated its potential as a methodology suitable to both research and design of technology-enhanced learning environments (TELEs). In this paper, we define and identify characteristics of design-based research, describe the importance of design-based research for the development of TELEs, propose principles for implementing design-based research with TELEs, and discuss future challenges of using this methodology.","published_in":"Educational Technology Research & Development","year":"2005","url":"designbased-research-and-technologyenhanced-learning-environments","file_hash":"d6f6d966ac7627ccb90d58ac6546fc3a66e27d5e","authors":"Wang,Feng;Hannafin,Michael J;","oa_state":"1","comments":[],"subject_orig":"","authors_string":"Feng Wang, Michael J Hannafin","authors_short_string":"F. Wang, M. Hannafin","safe_id":"6f7488e0__002d6d00__002d11df__002da2b2__002d0026b95e3eb7","num_readers":100,"internal_readers":101,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"outlink":"http://mendeley.com/catalog/designbased-research-and-technologyenhanced-learning-environments","comments_for_filtering":"","resized":false},{"id":"5d98b240-6d00-11df-a2b2-0026b95e3eb7","title":"Design-Based Research Methods for Studying Learning in Context: Introduction","readers":107,"x":"-1.64785637","y":"-2.49736712","area":"Design-based Research","paper_abstract":"Editorial introduction to special issue on design research: need to review the whole issue to identify relevant additional references.","published_in":"Educational Psychologist","year":"2004","url":"designbased-research-methods-for-studying-learning-in-context-introduction","file_hash":"86ddfff8e3c5e0ed68312a649a6513c5331d9701","authors":"Sandoval,William A;Bell,Philip;","oa_state":"0","comments":[],"subject_orig":"","authors_string":"William A Sandoval, Philip Bell","authors_short_string":"W. Sandoval, P. Bell","safe_id":"5d98b240__002d6d00__002d11df__002da2b2__002d0026b95e3eb7","num_readers":107,"internal_readers":108,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"outlink":"http://mendeley.com/catalog/designbased-research-methods-for-studying-learning-in-context-introduction","comments_for_filtering":"","resized":false},{"id":"5d966850-6d00-11df-a2b2-0026b95e3eb7","title":"Design-Based Research: An Emerging Paradigm for Educational Inquiry","readers":209,"x":"-1.61121218","y":"-2.00121105","area":"Design-based Research","paper_abstract":"The authors argue that design-based research, which blends empir- ical educational research with the theory-driven design of learning environments, is an important methodology for understanding how, when, and why educational innovations work in practice. Design- based researchers innovations embody specific theoretical claims about teaching and learning, and help us understand the relationships among educational theory, designed artifact, and practice. Design is central in efforts to foster learning, create usable knowledge, and ad- vance theories of learning and teaching in complex settings. Design- based research also may contribute to the growth of human capacity for subsequent educational reform.","published_in":"Educational Researcher","year":"2003","url":"designbased-research-an-emerging-paradigm-for-educational-inquiry","file_hash":"9c0ebe70da68d90069bbde0188c2066991fff096","authors":"Dbrc,;","oa_state":"1","comments":[],"subject_orig":"","authors_string":" Dbrc","authors_short_string":". Dbrc","safe_id":"5d966850__002d6d00__002d11df__002da2b2__002d0026b95e3eb7","num_readers":209,"internal_readers":210,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"outlink":"http://mendeley.com/catalog/designbased-research-an-emerging-paradigm-for-educational-inquiry","comments_for_filtering":"","resized":false},{"id":"5d95a500-6d00-11df-a2b2-0026b95e3eb7","title":"Design-Based Research: Putting a Stake in the Ground","readers":110,"x":"-1.95283326","y":"-2.26731672","area":"Design-based Research","paper_abstract":"The emerging field of the learning sciences is one that is interdisciplinary, drawing on multiple theoretical perspectives and research paradigms so as to build understandings of the nature and conditions of learning, cognition, and development. Learning sciences researchers investigate cognition in context, at times emphasizing one more than the other but with the broad goal of developing evidence-based claims derived from both laboratory-based and naturalistic investigations that result in knowledge about how people learn. This work can involve the development of technological tools, curriculum, and especially theory that can be used to understand and support learning. A fundamental assumption of many learning scientists is that cognition is not a thing located within the individual thinker but is a process that is distributed across the knower, the environment in which knowing occurs, and the activity in which the learner participates. In other words, learning, cognition, knowing, and context are irreducibly co-constituted and cannot be treated as isolated entities or processes. If one believes that context matters in terms of learning and cognition, research paradigms that simply examine these processes as isolated variables within laboratory or other impoverished contexts of participation will necessarily lead to an incomplete understanding of their relevance in more naturalistic settings (Brown, 1992).1 Alternatively, simply observing learning and cognition as they naturally THE JOURNAL OF THE LEARNING SCIENCES, 13(1), 114 Copyright 2004, Lawrence Erlbaum Associates, Inc. Correspondence and requests for reprints should be sent to Sasha A. Barab, School of Education, Room 2232, 201 North Rose Avenue, Bloomington, IN 47405. E-mail: sbarabindiana.edu 1This special issue is dedicated to the memory and intellectual contributions of Ann Brown, who so clearly led theway in illuminating for the field the challenges and opportunities discussed in this issue. occur in the world is not adequate given that learning scientists frequently have transformative agendas. Education is an applied field, and learning scientists bring agendas to their work, seeking to produce specific results such as engaging students in the making of science, creating online communities for professional development, or creating history classrooms that confront students preexisting beliefs about race, gender, or class. As such, learning scientists have found that they must develop technological tools, curriculum, and especially theories that help them systematically understand and predict how learning occurs. Such design research offers several benefits: research results that consider the role of social context and have better potential for influencing educational practice, tangible products, and programs that can be adopted elsewhere; and research results that are validated through the consequences of their use, providing consequential evidence or validity (Messick, 1992). However, participating in local educational practices places researchers in the role of curriculum designers, and implicitly, curriculum theorists who are directly positioned in social and political contexts of educational practice (both global and local) and who are accountable for the social and political consequences of their research programs. Increasingly, learning scientists are finding themselves developing contexts, frameworks, tools and pedagogical models consistent with and to better understand emerging pedagogical theories or ontological commitments (see diSessa & Cobb, this issue). In these contexts, the research moves beyond simply observing and actually involves systematically engineering these contexts in ways that allow us to improve and generate evidence-based claims about learning. The commitment to examining learning in naturalistic contexts, many of which are designed and systematically changed by the researcher, necessitates the development of a methodological toolkit for deriving evidence-based claims from these contexts. One such methodology that has grown in application is that of design experimentation or design-based research, frequently traced back to the work of Ann Brown (1992) and Alan Collins (1992). Design-based research is not so much an approach as it is a series of approaches, with the intent of producing new theories, artifacts, and practices that account for and potentially impact learning and teaching in naturalistic settings. Cobb, diSessa, Lehrer, & Schauble (2003) stated: Prototypically, design experiments entail both engineering particular forms of learning and systematically studying those forms of learning within the context defined by the means of supporting them. This designed context is subject to test and revision, and the successive iterations that result play a role similar to that of systematic variation in experiment. (p. 9) They further suggested that design-based research has a number of common features, including the fact that they result in the production of theories on learning and teaching, are interventionist (involving some sort of design), take place in naturalistic contexts, and are iterative. Design-based research is not simply a type of formative evaluation that allows learning scientists to better understand the ecological validity of theoretical claims generated in the laboratory. Design-based research, as conceived by Ann Brown (1992), was introduced with the expectation that researchers would systemically adjust various aspects of the designed context so that each adjustment served as a type of experimentation that allowed the researchers to test and generate theory in naturalistic contexts. Although design-based research has the potential to offer a useful methodological toolkit to those researchers committed to understanding variables within naturalistic contexts, there are many unresolved questions that we as a community must address if our assertions are going to be deemed credible and trustworthy to others. Some questions are: What are the core foci of design-based research and what delineates it from other forms of research? What counts as reasonable and useful warrants for advancing assertions investigated through this type of research? What are the boundaries of a naturalistic context? How do we control researcher bias in selecting evidence, in reporting observations, and in developing trustworthy claims? How do we understand the contextuality of reserach claims generated in situ and use them to inform broader practice? In the following, we begin the process of responding to these questions, a process that is taken up in greater detail through the core articles and commentaries that comprise this special issue and that we hope will be taken up over the next decade by our colleagues.","published_in":"The Journal of the Learning Sciences","year":"2004","url":"designbased-research-putting-a-stake-in-the-ground","file_hash":"4f0e6e7d48a2c4f0586b2d33cff7f3c3099a1cec","authors":"Barab,Sasha;Squire,Kurt;","oa_state":"0","comments":[],"subject_orig":"","authors_string":"Sasha Barab, Kurt Squire","authors_short_string":"S. Barab, K. Squire","safe_id":"5d95a500__002d6d00__002d11df__002da2b2__002d0026b95e3eb7","num_readers":110,"internal_readers":111,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"outlink":"http://mendeley.com/catalog/designbased-research-putting-a-stake-in-the-ground","comments_for_filtering":"","resized":false},{"id":"683b2b60-6d00-11df-a2b2-0026b95e3eb7","title":"Design Experiments in Educational Research","readers":249,"x":"-1.62481720","y":"-1.53130122","area":"Design-based Research","paper_abstract":"In this article, the authors first indicate the range of purposes and the variety of settings in which design experiments have been con- ducted and then delineate five crosscutting features that collectively differentiate design experiments from other methodologies. Design experiments have both a pragmatic bentengineering particular forms of learningand a theoretical orientationdeveloping domain- specific theories by systematically studying those forms of learning and the means of supporting them. The authors clarify what is in- volved in preparing for and carrying out a design experiment, and in conducting a retrospective analysis of the extensive, longitudinal data sets generated during an experiment. Logistical issues, issues of mea- sure, the importance of working through the data systematically, and the need to be explicit about the criteria for making inferences are discussed.","published_in":"Educational Researcher","year":"2003","url":"design-experiments-in-educational-research","file_hash":"12b16d65d3fbf45737d7bc3e9ef6516185fce577","authors":"Cobb,P;Confrey,J;diSessa,A;Lehrer,R;Schauble,L;","oa_state":"1","comments":[],"subject_orig":"","authors_string":"P Cobb, J Confrey, A diSessa, R Lehrer, L Schauble","authors_short_string":"P. Cobb, J. Confrey, A. diSessa, R. Lehrer, L. Schauble","safe_id":"683b2b60__002d6d00__002d11df__002da2b2__002d0026b95e3eb7","num_readers":249,"internal_readers":250,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"outlink":"http://mendeley.com/catalog/design-experiments-in-educational-research","comments_for_filtering":"","resized":false},{"id":"1e196c00-6d09-11df-a2b2-0026b95e3eb7","title":"Design Research: Theoretical and Methodological Issues","readers":101,"x":"-1.82696411","y":"-2.31185329","area":"Design-based Research","paper_abstract":"The term 'design experiments' was introduced in 1992, in articles by Ann Brown (1992) and Allan Collins (1992). Design experiments were developed as a way to carry out formative research to test and refine educational designs based on principles derived from prior research. More recently the term design research has been applied to this kind of work. In this article, we outline the goals of design research and how it is related to other methodologies. We illustrate how design research is carried out with two very different examples. And we provide guidelines for how design research can best be carried out in the future.","published_in":"The Journal of the Learning Sciences","year":"2004","url":"design-research-theoretical-and-methodological-issues-1","file_hash":"704485ed39e25dcb53a4f4c3f5e52b2c828cbe7f","authors":"Collins,Allan;Joseph,Diana;Bielaczyc,Katerine;","oa_state":"0","comments":[],"subject_orig":"","authors_string":"Allan Collins, Diana Joseph, Katerine Bielaczyc","authors_short_string":"A. Collins, D. Joseph, K. Bielaczyc","safe_id":"1e196c00__002d6d09__002d11df__002da2b2__002d0026b95e3eb7","num_readers":101,"internal_readers":102,"num_subentries":0,"paper_selected":false,"oa":false,"free_access":false,"outlink":"http://mendeley.com/catalog/design-research-theoretical-and-methodological-issues-1","comments_for_filtering":"","resized":false},{"id":"b81de2a0-6d03-11df-a2b2-0026b95e3eb7","title":"Developing the theory of formative assessment","readers":220,"x":"-1.52212092","y":"0.64832893","area":"Meta Analysis","paper_abstract":"Whilst many definitions of formative assessment have been offered, there is no clear rationale to define and delimit it within broader theories of pedagogy. This paper aims to offer such a rationale, within a framework which can also unify the diverse set of practices which have been described as formative. The analysis is used to relate formative assessment both to other pedagogic initiatives, notably cognitive acceleration and dynamic assessment, and to some of the existing literature on models of self-regulated learning and on classroom discourse. This framework should indicate potentially fruitful lines for further enquiry, whilst at the same time opening up new ways of helping teachers to implement formative practices more effectively.","published_in":"Educational Assessment Evaluation and Accountability","year":"2005","url":"developing-the-theory-of-formative-assessment","file_hash":"df737d010bf4bde2f4ec5404119dbb3c4594dbe9","authors":"Black,Paul;Wiliam,Dylan;","oa_state":"1","comments":[],"subject_orig":"","authors_string":"Paul Black, Dylan Wiliam","authors_short_string":"P. Black, D. Wiliam","safe_id":"b81de2a0__002d6d03__002d11df__002da2b2__002d0026b95e3eb7","num_readers":220,"internal_readers":221,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"outlink":"http://mendeley.com/catalog/developing-the-theory-of-formative-assessment","comments_for_filtering":"","resized":false}]`;
-export default JSON.parse(data);
+const rawData = JSON.parse(data);
+rawData.forEach((paper) => {
+ paper.resulttype = [];
+ paper.keywords = paper.subject_orig;
+ paper.list_link = { address: paper.link, isDoi: false };
+ paper.tags = [];
+});
+
+export default rawData;
diff --git a/vis/test/data/pubmed.js b/vis/test/data/pubmed.js
index c9fc0fb66..86a8529d8 100644
--- a/vis/test/data/pubmed.js
+++ b/vis/test/data/pubmed.js
@@ -1,3 +1,11 @@
const data = `[{"id":"31967321","title":"Cross-species transmission of the newly identified coronavirus 2019-nCoV.","pmid":"31967321","published_in":"Journal of medical virology","paper_abstract":"The current outbreak of viral pneumonia in the city of Wuhan, China, was caused by a novel coronavirus designated 2019-nCoV by the World Health Organization, as determined by sequencing the viral RNA genome. Many initial patients were exposed to wildlife animals at the Huanan seafood wholesale market, where poultry, snake, bats, and other farm animals were also sold. To investigate possible virus reservoir, we have carried out comprehensive sequence analysis and comparison in conjunction with relative synonymous codon usage (RSCU) bias among different animal species based on the 2019-nCoV sequence. Results obtained from our analyses suggest that the 2019-nCoV may appear to be a recombinant virus between the bat coronavirus and an origin-unknown coronavirus. The recombination may occurred within the viral spike glycoprotein, which recognizes a cell surface receptor. Additionally, our findings suggest that 2019-nCoV has most similar genetic information with bat coronovirus and most similar codon usage bias with snake. Taken together, our results suggest that homologous recombination may occur and contribute to the 2019-nCoV cross-species transmission.© 2020 Wiley Periodicals, Inc.","date":"","year":"2020","authors":"Ji, Wei;Wang, Wei;Zhao, Xiaofang;Zai, Junjie;Li, Xingguang","subject":"2019-nCoV;codon usage bias;cross-species transmission;phylogenetic analysis;recombination","publication_type":"Journal Article; Research Support, Non-U.S. Gov't","url":"http://www.ncbi.nlm.nih.gov/pubmed/31967321","content":"Cross-species transmission of the newly identified coronavirus 2019-nCoV. The current outbreak of viral pneumonia in the city of Wuhan, China, was caused by a novel coronavirus designated 2019-nCoV by the World Health Organization, as determined by sequencing the viral RNA genome. Many initial patients were exposed to wildlife animals at the Huanan seafood wholesale market, where poultry, snake, bats, and other farm animals were also sold. To investigate possible virus reservoir, we have carried out comprehensive sequence analysis and comparison in conjunction with relative synonymous codon usage (RSCU) bias among different animal species based on the 2019-nCoV sequence. Results obtained from our analyses suggest that the 2019-nCoV may appear to be a recombinant virus between the bat coronavirus and an origin-unknown coronavirus. The recombination may occurred within the viral spike glycoprotein, which recognizes a cell surface receptor. Additionally, our findings suggest that 2019-nCoV has most similar genetic information with bat coronovirus and most similar codon usage bias with snake. Taken together, our results suggest that homologous recombination may occur and contribute to the 2019-nCoV cross-species transmission.© 2020 Wiley Periodicals, Inc. Ji, Wei;Wang, Wei;Zhao, Xiaofang;Zai, Junjie;Li, Xingguang 2019-nCoV;codon usage bias;cross-species transmission;phylogenetic analysis;recombination Journal of medical virology","subject_orig":"2019-nCoV;codon usage bias;cross-species transmission;phylogenetic analysis;recombination","readers":87,"pmcid":"PMC7138088","lang_detected":"english","cluster_labels":"Synthetic vaccine, COVID19 coronavirus, Cross-species transmission","x":"-0.41160362","y":"-0.03030221","area_uri":1,"area":"Synthetic vaccine, COVID19 coronavirus, Cross-species transmission","file_hash":"hashHash","comments":[],"authors_string":"Wei Ji, Wei Wang, Xiaofang Zhao, Junjie Zai, Xingguang Li","authors_short_string":"W. Ji, W. Wang, X. Zhao, J. Zai, X. Li","safe_id":"31967321","num_readers":87,"internal_readers":88,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7138088/pdf/","outlink":"http://www.ncbi.nlm.nih.gov/pubmed/31967321","comments_for_filtering":"","title_sort":"Cross-species transmission of the newly identified coronavirus 2019-nCoV.","authors_string_sort":"Wei Ji, Wei Wang, Xiaofang Zhao, Junjie Zai, Xingguang Li","paper_abstract_sort":"The current outbreak of viral pneumonia in the city of Wuhan, China, was caused by a novel coronavirus designated 2019-nCoV by the World Health Organization, as determined by sequencing the viral RNA genome. Many initial patients were exposed to wildlife animals at the Huanan seafood wholesale market, where poultry, snake, bats, and other farm animals were also sold. To investigate possible virus reservoir, we have carried out comprehensive sequence analysis and comparison in conjunction with relative synonymous codon usage (RSCU) bias among different animal species based on the 2019-nCoV sequence. Results obtained from our analyses suggest that the 2019-nCoV may appear to be a recombinant virus between the bat coronavirus and an origin-unknown coronavirus. The recombination may occurred within the viral spike glycoprotein, which recognizes a cell surface receptor. Additionally, our findings suggest that 2019-nCoV has most similar genetic information with bat coronovirus and most similar codon usage bias with snake. Taken together, our results suggest that homologous recombination may occur and contribute to the 2019-nCoV cross-species transmission.© 2020 Wiley Periodicals, Inc.","year_sort":"2020","published_in_sort":"Journal of medical virology","subject_orig_sort":"2019-nCoV;codon usage bias;cross-species transmission;phylogenetic analysis;recombination","resized":false},{"id":"31991541","title":"Return of the Coronavirus: 2019-nCoV.","pmid":"31991541","published_in":"Viruses","paper_abstract":"The emergence of a novel coronavirus (2019-nCoV) has awakened the echoes of SARS-CoV from nearly two decades ago. Yet, with technological advances and important lessons gained from previous outbreaks, perhaps the world is better equipped to deal with the most recent emergent group 2B coronavirus.","date":"","year":"2020","authors":"Gralinski, Lisa E;Menachery, Vineet D","subject":"2019-nCoV;MERS-CoV;SARS-CoV;Wuhan;Wuhan pneumonia;coronavirus;emerging viruses;novel CoV","publication_type":"Journal Article","content":"Return of the Coronavirus: 2019-nCoV. The emergence of a novel coronavirus (2019-nCoV) has awakened the echoes of SARS-CoV from nearly two decades ago. Yet, with technological advances and important lessons gained from previous outbreaks, perhaps the world is better equipped to deal with the most recent emergent group 2B coronavirus. Gralinski, Lisa E;Menachery, Vineet D 2019-nCoV;MERS-CoV;SARS-CoV;Wuhan;Wuhan pneumonia;coronavirus;emerging viruses;novel CoV Viruses","subject_orig":"2019-nCoV;MERS-CoV;SARS-CoV;Wuhan;Wuhan pneumonia;coronavirus;emerging viruses;novel CoV","readers":67,"pmcid":"PMC7077245","lang_detected":"english","cluster_labels":"Data analysis, Emerging viruses, Health workers","x":"-0.40693288","y":"-0.10396766","area_uri":10,"area":"Data analysis, Emerging viruses, Health workers","file_hash":"hashHash","comments":[],"authors_string":"Lisa E Gralinski, Vineet D Menachery","authors_short_string":"L. Gralinski, V. Menachery","safe_id":"31991541","num_readers":67,"internal_readers":68,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7077245/pdf/","outlink":"http://www.ncbi.nlm.nih.gov/pubmed/31991541","comments_for_filtering":"","title_sort":"Return of the Coronavirus: 2019-nCoV.","authors_string_sort":"Lisa E Gralinski, Vineet D Menachery","paper_abstract_sort":"The emergence of a novel coronavirus (2019-nCoV) has awakened the echoes of SARS-CoV from nearly two decades ago. Yet, with technological advances and important lessons gained from previous outbreaks, perhaps the world is better equipped to deal with the most recent emergent group 2B coronavirus.","year_sort":"2020","published_in_sort":"Viruses","subject_orig_sort":"2019-nCoV;MERS-CoV;SARS-CoV;Wuhan;Wuhan pneumonia;coronavirus;emerging viruses;novel CoV","resized":false},{"id":"32007643","title":"Preliminary estimation of the basic reproduction number of novel coronavirus (2019-nCoV) in China, from 2019 to 2020: A data-driven analysis in the early phase of the outbreak.","pmid":"32007643","published_in":"International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases","paper_abstract":"An ongoing outbreak of a novel coronavirus (2019-nCoV) pneumonia hit a major city in China, Wuhan, December 2019 and subsequently reached other provinces/regions of China and other countries. We present estimates of the basic reproduction number, R0, of 2019-nCoV in the early phase of the outbreak.Accounting for the impact of the variations in disease reporting rate, we modelled the epidemic curve of 2019-nCoV cases time series, in mainland China from January 10 to January 24, 2020, through the exponential growth. With the estimated intrinsic growth rate (γ), we estimated R0 by using the serial intervals (SI) of two other well-known coronavirus diseases, MERS and SARS, as approximations for the true unknown SI.The early outbreak data largely follows the exponential growth. We estimated that the mean R0 ranges from 2.24 (95%CI: 1.96-2.55) to 3.58 (95%CI: 2.89-4.39) associated with 8-fold to 2-fold increase in the reporting rate. We demonstrated that changes in reporting rate substantially affect estimates of R0.The mean estimate of R0 for the 2019-nCoV ranges from 2.24 to 3.58, and is significantly larger than 1. Our findings indicate the potential of 2019-nCoV to cause outbreaks.Copyright © 2020 The Author(s). Published by Elsevier Ltd.. All rights reserved.","date":"","year":"2020","authors":"Zhao, Shi;Lin, Qianyin;Ran, Jinjun;Musa, Salihu S;Yang, Guangpu;Wang, Weiming;Lou, Yijun;Gao, Daozhou;Yang, Lin;He, Daihai;Wang, Maggie H","subject":"Basic reproduction number;Novel coronavirus (2019-nCoV)","publication_type":"Journal Article","url":"http://www.ncbi.nlm.nih.gov/pubmed/32007643","content":"Preliminary estimation of the basic reproduction number of novel coronavirus (2019-nCoV) in China, from 2019 to 2020: A data-driven analysis in the early phase of the outbreak. An ongoing outbreak of a novel coronavirus (2019-nCoV) pneumonia hit a major city in China, Wuhan, December 2019 and subsequently reached other provinces/regions of China and other countries. We present estimates of the basic reproduction number, R0, of 2019-nCoV in the early phase of the outbreak.Accounting for the impact of the variations in disease reporting rate, we modelled the epidemic curve of 2019-nCoV cases time series, in mainland China from January 10 to January 24, 2020, through the exponential growth. With the estimated intrinsic growth rate (γ), we estimated R0 by using the serial intervals (SI) of two other well-known coronavirus diseases, MERS and SARS, as approximations for the true unknown SI.The early outbreak data largely follows the exponential growth. We estimated that the mean R0 ranges from 2.24 (95%CI: 1.96-2.55) to 3.58 (95%CI: 2.89-4.39) associated with 8-fold to 2-fold increase in the reporting rate. We demonstrated that changes in reporting rate substantially affect estimates of R0.The mean estimate of R0 for the 2019-nCoV ranges from 2.24 to 3.58, and is significantly larger than 1. Our findings indicate the potential of 2019-nCoV to cause outbreaks.Copyright © 2020 The Author(s). Published by Elsevier Ltd.. All rights reserved. Zhao, Shi;Lin, Qianyin;Ran, Jinjun;Musa, Salihu S;Yang, Guangpu;Wang, Weiming;Lou, Yijun;Gao, Daozhou;Yang, Lin;He, Daihai;Wang, Maggie H Basic reproduction number;Novel coronavirus (2019-nCoV) International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases","doi":"10.1016/j.ijid.2020.01.050","subject_orig":"Basic reproduction number;Novel coronavirus (2019-nCoV)","readers":152,"pmcid":"PMC7110798","lang_detected":"english","cluster_labels":"Basic reproduction number, Human-to-human transmission, January 2020","x":"-0.21771959","y":"0.25052009","area_uri":9,"area":"Basic reproduction number, Human-to-human transmission, January 2020","file_hash":"hashHash","comments":[],"authors_string":"Shi Zhao, Qianyin Lin, Jinjun Ran, Salihu S Musa, Guangpu Yang, Weiming Wang, Yijun Lou, Daozhou Gao, Lin Yang, Daihai He, Maggie H Wang","authors_short_string":"S. Zhao, Q. Lin, J. Ran, S. Musa, G. Yang, W. Wang, Y. Lou, D. Gao, L. Yang, D. He, M. Wang","safe_id":"32007643","num_readers":152,"internal_readers":153,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7110798/pdf/","outlink":"http://www.ncbi.nlm.nih.gov/pubmed/32007643","comments_for_filtering":"","title_sort":"Preliminary estimation of the basic reproduction number of novel coronavirus (2019-nCoV) in China, from 2019 to 2020: A data-driven analysis in the early phase of the outbreak.","authors_string_sort":"Shi Zhao, Qianyin Lin, Jinjun Ran, Salihu S Musa, Guangpu Yang, Weiming Wang, Yijun Lou, Daozhou Gao, Lin Yang, Daihai He, Maggie H Wang","paper_abstract_sort":"An ongoing outbreak of a novel coronavirus (2019-nCoV) pneumonia hit a major city in China, Wuhan, December 2019 and subsequently reached other provinces/regions of China and other countries. We present estimates of the basic reproduction number, R0, of 2019-nCoV in the early phase of the outbreak.Accounting for the impact of the variations in disease reporting rate, we modelled the epidemic curve of 2019-nCoV cases time series, in mainland China from January 10 to January 24, 2020, through the exponential growth. With the estimated intrinsic growth rate (γ), we estimated R0 by using the serial intervals (SI) of two other well-known coronavirus diseases, MERS and SARS, as approximations for the true unknown SI.The early outbreak data largely follows the exponential growth. We estimated that the mean R0 ranges from 2.24 (95%CI: 1.96-2.55) to 3.58 (95%CI: 2.89-4.39) associated with 8-fold to 2-fold increase in the reporting rate. We demonstrated that changes in reporting rate substantially affect estimates of R0.The mean estimate of R0 for the 2019-nCoV ranges from 2.24 to 3.58, and is significantly larger than 1. Our findings indicate the potential of 2019-nCoV to cause outbreaks.Copyright © 2020 The Author(s). Published by Elsevier Ltd.. All rights reserved.","year_sort":"2020","published_in_sort":"International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases","subject_orig_sort":"Basic reproduction number;Novel coronavirus (2019-nCoV)","resized":false},{"id":"32019669","title":"Pattern of early human-to-human transmission of Wuhan 2019 novel coronavirus (2019-nCoV), December 2019 to January 2020.","pmid":"32019669","published_in":"Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin","paper_abstract":"Since December 2019, China has been experiencing a large outbreak of a novel coronavirus (2019-nCoV) which can cause respiratory disease and severe pneumonia. We estimated the basic reproduction number R0 of 2019-nCoV to be around 2.2 (90% high density interval: 1.4-3.8), indicating the potential for sustained human-to-human transmission. Transmission characteristics appear to be of similar magnitude to severe acute respiratory syndrome-related coronavirus (SARS-CoV) and pandemic influenza, indicating a risk of global spread.","date":"","year":"2020","authors":"Riou, Julien;Althaus, Christian L","subject":"2019-nCoV;Wuhan;coronavirus;emerging infectious disease;mathematical modelling","publication_type":"Journal Article","url":"http://www.ncbi.nlm.nih.gov/pubmed/32019669","content":"Pattern of early human-to-human transmission of Wuhan 2019 novel coronavirus (2019-nCoV), December 2019 to January 2020. Since December 2019, China has been experiencing a large outbreak of a novel coronavirus (2019-nCoV) which can cause respiratory disease and severe pneumonia. We estimated the basic reproduction number R0 of 2019-nCoV to be around 2.2 (90% high density interval: 1.4-3.8), indicating the potential for sustained human-to-human transmission. Transmission characteristics appear to be of similar magnitude to severe acute respiratory syndrome-related coronavirus (SARS-CoV) and pandemic influenza, indicating a risk of global spread. Riou, Julien;Althaus, Christian L 2019-nCoV;Wuhan;coronavirus;emerging infectious disease;mathematical modelling Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin","doi":"10.2807/1560-7917.ES.2020.25.4.2000058","subject_orig":"2019-nCoV;Wuhan;coronavirus;emerging infectious disease;mathematical modelling","readers":93,"pmcid":"PMC7001239","lang_detected":"english","cluster_labels":"Basic reproduction number, Human-to-human transmission, January 2020","x":"-0.11439087","y":"0.20021205","area_uri":9,"area":"Basic reproduction number, Human-to-human transmission, January 2020","file_hash":"hashHash","comments":[],"authors_string":"Julien Riou, Christian L Althaus","authors_short_string":"J. Riou, C. Althaus","safe_id":"32019669","num_readers":93,"internal_readers":94,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7001239/pdf/","outlink":"http://www.ncbi.nlm.nih.gov/pubmed/32019669","comments_for_filtering":"","title_sort":"Pattern of early human-to-human transmission of Wuhan 2019 novel coronavirus (2019-nCoV), December 2019 to January 2020.","authors_string_sort":"Julien Riou, Christian L Althaus","paper_abstract_sort":"Since December 2019, China has been experiencing a large outbreak of a novel coronavirus (2019-nCoV) which can cause respiratory disease and severe pneumonia. We estimated the basic reproduction number R0 of 2019-nCoV to be around 2.2 (90% high density interval: 1.4-3.8), indicating the potential for sustained human-to-human transmission. Transmission characteristics appear to be of similar magnitude to severe acute respiratory syndrome-related coronavirus (SARS-CoV) and pandemic influenza, indicating a risk of global spread.","year_sort":"2020","published_in_sort":"Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin","subject_orig_sort":"2019-nCoV;Wuhan;coronavirus;emerging infectious disease;mathematical modelling","resized":false},{"id":"32020915","title":"The Novel Coronavirus: A Bird's Eye View.","pmid":"32020915","published_in":"The international journal of occupational and environmental medicine","paper_abstract":"The novel coronavirus (2019-nCoV) outbreak, which initially began in China, has spread to many countries around the globe, with the number of confirmed cases increasing every day. With a death toll exceeding that of the SARS-CoV outbreak back in 2002 and 2003 in China, 2019-nCoV has led to a public health emergency of international concern, putting all health organizations on high alert. Herein, we present on an overview of the currently available information on the pathogenesis, epidemiology, clinical presentation, diagnosis, and treatment of this virus.","date":"","year":"2020","authors":"Habibzadeh, Parham;Stoneman, Emily K","subject":"2019-nCoV;China;Coronavirus;Emerging viruses;Middle East respiratory syndrome coronavirus;Novel coronavirus;Outbreak;SARS coronavirus;Wuhan;COVID-19;SARS-CoV-2","publication_type":"Journal Article; Review","url":"http://www.ncbi.nlm.nih.gov/pubmed/32020915","content":"The Novel Coronavirus: A Bird's Eye View. The novel coronavirus (2019-nCoV) outbreak, which initially began in China, has spread to many countries around the globe, with the number of confirmed cases increasing every day. With a death toll exceeding that of the SARS-CoV outbreak back in 2002 and 2003 in China, 2019-nCoV has led to a public health emergency of international concern, putting all health organizations on high alert. Herein, we present on an overview of the currently available information on the pathogenesis, epidemiology, clinical presentation, diagnosis, and treatment of this virus. Habibzadeh, Parham;Stoneman, Emily K 2019-nCoV;China;Coronavirus;Emerging viruses;Middle East respiratory syndrome coronavirus;Novel coronavirus;Outbreak;SARS coronavirus;Wuhan;COVID-19;SARS-CoV-2 The international journal of occupational and environmental medicine","doi":"10.15171/ijoem.2020.1921","subject_orig":"2019-nCoV;China;Coronavirus;Emerging viruses;Middle East respiratory syndrome coronavirus;Novel coronavirus;Outbreak;SARS coronavirus;Wuhan;COVID-19 ;SARS-CoV-2","readers":30,"pmcid":"PMC7205509","lang_detected":"english","cluster_labels":"Data analysis, Emerging viruses, Health workers","x":"-0.31795338","y":"0.02066303","area_uri":10,"area":"Data analysis, Emerging viruses, Health workers","file_hash":"hashHash","comments":[],"authors_string":"Parham Habibzadeh, Emily K Stoneman","authors_short_string":"P. Habibzadeh, E. Stoneman","safe_id":"32020915","num_readers":30,"internal_readers":31,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7205509/pdf/","outlink":"http://www.ncbi.nlm.nih.gov/pubmed/32020915","comments_for_filtering":"","title_sort":"The Novel Coronavirus: A Bird's Eye View.","authors_string_sort":"Parham Habibzadeh, Emily K Stoneman","paper_abstract_sort":"The novel coronavirus (2019-nCoV) outbreak, which initially began in China, has spread to many countries around the globe, with the number of confirmed cases increasing every day. With a death toll exceeding that of the SARS-CoV outbreak back in 2002 and 2003 in China, 2019-nCoV has led to a public health emergency of international concern, putting all health organizations on high alert. Herein, we present on an overview of the currently available information on the pathogenesis, epidemiology, clinical presentation, diagnosis, and treatment of this virus.","year_sort":"2020","published_in_sort":"The international journal of occupational and environmental medicine","subject_orig_sort":"2019-nCoV;China;Coronavirus;Emerging viruses;Middle East respiratory syndrome coronavirus;Novel coronavirus;Outbreak;SARS coronavirus;Wuhan;COVID-19;SARS-CoV-2","resized":false},{"id":"32027573","title":"Emerging 2019 Novel Coronavirus (2019-nCoV) Pneumonia.","pmid":"32027573","published_in":"Radiology","paper_abstract":"BackgroundThe chest CT findings of patients with 2019 Novel Coronavirus (2019-nCoV) pneumonia have not previously been described in detail.PurposeTo investigate the clinical, laboratory, and imaging findings of emerging 2019-nCoV pneumonia in humans.Materials and MethodsFifty-one patients (25 men and 26 women; age range 16-76 years) with laboratory-confirmed 2019-nCoV infection by using real-time reverse transcription polymerase chain reaction underwent thin-section CT. The imaging findings, clinical data, and laboratory data were evaluated.ResultsFifty of 51 patients (98%) had a history of contact with individuals from the endemic center in Wuhan, China. Fever (49 of 51, 96%) and cough (24 of 51, 47%) were the most common symptoms. Most patients had a normal white blood cell count (37 of 51, 73%), neutrophil count (44 of 51, 86%), and either normal (17 of 51, 35%) or reduced (33 of 51, 65%) lymphocyte count. CT images showed pure ground-glass opacity (GGO) in 39 of 51 (77%) patients and GGO with reticular and/or interlobular septal thickening in 38 of 51 (75%) patients. GGO with consolidation was present in 30 of 51 (59%) patients, and pure consolidation was present in 28 of 51 (55%) patients. Forty-four of 51 (86%) patients had bilateral lung involvement, while 41 of 51 (80%) involved the posterior part of the lungs and 44 of 51 (86%) were peripheral. There were more consolidated lung lesions in patients 5 days or more from disease onset to CT scan versus 4 days or fewer (431 of 712 lesions vs 129 of 612 lesions; P < .001). Patients older than 50 years had more consolidated lung lesions than did those aged 50 years or younger (212 of 470 vs 198 of 854; P < .001). Follow-up CT in 13 patients showed improvement in seven (54%) patients and progression in four (31%) patients.ConclusionPatients with fever and/or cough and with conspicuous ground-glass opacity lesions in the peripheral and posterior lungs on CT images, combined with normal or decreased white blood cells and a history of epidemic exposure, are highly suspected of having 2019 Novel Coronavirus (2019-nCoV) pneumonia.© RSNA, 2020.","date":"","year":"2020","authors":"Song, Fengxiang;Shi, Nannan;Shan, Fei;Zhang, Zhiyong;Shen, Jie;Lu, Hongzhou;Ling, Yun;Jiang, Yebin;Shi, Yuxin","subject":"emerging novel; ncov pneumonia","publication_type":"Journal Article","url":"http://www.ncbi.nlm.nih.gov/pubmed/32027573","content":"Emerging 2019 Novel Coronavirus (2019-nCoV) Pneumonia. BackgroundThe chest CT findings of patients with 2019 Novel Coronavirus (2019-nCoV) pneumonia have not previously been described in detail.PurposeTo investigate the clinical, laboratory, and imaging findings of emerging 2019-nCoV pneumonia in humans.Materials and MethodsFifty-one patients (25 men and 26 women; age range 16-76 years) with laboratory-confirmed 2019-nCoV infection by using real-time reverse transcription polymerase chain reaction underwent thin-section CT. The imaging findings, clinical data, and laboratory data were evaluated.ResultsFifty of 51 patients (98%) had a history of contact with individuals from the endemic center in Wuhan, China. Fever (49 of 51, 96%) and cough (24 of 51, 47%) were the most common symptoms. Most patients had a normal white blood cell count (37 of 51, 73%), neutrophil count (44 of 51, 86%), and either normal (17 of 51, 35%) or reduced (33 of 51, 65%) lymphocyte count. CT images showed pure ground-glass opacity (GGO) in 39 of 51 (77%) patients and GGO with reticular and/or interlobular septal thickening in 38 of 51 (75%) patients. GGO with consolidation was present in 30 of 51 (59%) patients, and pure consolidation was present in 28 of 51 (55%) patients. Forty-four of 51 (86%) patients had bilateral lung involvement, while 41 of 51 (80%) involved the posterior part of the lungs and 44 of 51 (86%) were peripheral. There were more consolidated lung lesions in patients 5 days or more from disease onset to CT scan versus 4 days or fewer (431 of 712 lesions vs 129 of 612 lesions; P < .001). Patients older than 50 years had more consolidated lung lesions than did those aged 50 years or younger (212 of 470 vs 198 of 854; P < .001). Follow-up CT in 13 patients showed improvement in seven (54%) patients and progression in four (31%) patients.ConclusionPatients with fever and/or cough and with conspicuous ground-glass opacity lesions in the peripheral and posterior lungs on CT images, combined with normal or decreased white blood cells and a history of epidemic exposure, are highly suspected of having 2019 Novel Coronavirus (2019-nCoV) pneumonia.© RSNA, 2020. Song, Fengxiang;Shi, Nannan;Shan, Fei;Zhang, Zhiyong;Shen, Jie;Lu, Hongzhou;Ling, Yun;Jiang, Yebin;Shi, Yuxin Radiology","doi":"10.1148/radiol.2020200274","subject_orig":"","readers":90,"pmcid":"PMC7233366","lang_detected":"english","cluster_labels":"2019 novel coronavirus","x":"0.39963461","y":"0.20749722","area_uri":13,"area":"2019 novel coronavirus","file_hash":"hashHash","comments":[],"authors_string":"Fengxiang Song, Nannan Shi, Fei Shan, Zhiyong Zhang, Jie Shen, Hongzhou Lu, Yun Ling, Yebin Jiang, Yuxin Shi","authors_short_string":"F. Song, N. Shi, F. Shan, Z. Zhang, J. Shen, H. Lu, Y. Ling, Y. Jiang, Y. Shi","safe_id":"32027573","num_readers":90,"internal_readers":91,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7233366/pdf/","outlink":"http://www.ncbi.nlm.nih.gov/pubmed/32027573","comments_for_filtering":"","title_sort":"Emerging 2019 Novel Coronavirus (2019-nCoV) Pneumonia.","authors_string_sort":"Fengxiang Song, Nannan Shi, Fei Shan, Zhiyong Zhang, Jie Shen, Hongzhou Lu, Yun Ling, Yebin Jiang, Yuxin Shi","paper_abstract_sort":"BackgroundThe chest CT findings of patients with 2019 Novel Coronavirus (2019-nCoV) pneumonia have not previously been described in detail.PurposeTo investigate the clinical, laboratory, and imaging findings of emerging 2019-nCoV pneumonia in humans.Materials and MethodsFifty-one patients (25 men and 26 women; age range 16-76 years) with laboratory-confirmed 2019-nCoV infection by using real-time reverse transcription polymerase chain reaction underwent thin-section CT. The imaging findings, clinical data, and laboratory data were evaluated.ResultsFifty of 51 patients (98%) had a history of contact with individuals from the endemic center in Wuhan, China. Fever (49 of 51, 96%) and cough (24 of 51, 47%) were the most common symptoms. Most patients had a normal white blood cell count (37 of 51, 73%), neutrophil count (44 of 51, 86%), and either normal (17 of 51, 35%) or reduced (33 of 51, 65%) lymphocyte count. CT images showed pure ground-glass opacity (GGO) in 39 of 51 (77%) patients and GGO with reticular and/or interlobular septal thickening in 38 of 51 (75%) patients. GGO with consolidation was present in 30 of 51 (59%) patients, and pure consolidation was present in 28 of 51 (55%) patients. Forty-four of 51 (86%) patients had bilateral lung involvement, while 41 of 51 (80%) involved the posterior part of the lungs and 44 of 51 (86%) were peripheral. There were more consolidated lung lesions in patients 5 days or more from disease onset to CT scan versus 4 days or fewer (431 of 712 lesions vs 129 of 612 lesions; P < .001). Patients older than 50 years had more consolidated lung lesions than did those aged 50 years or younger (212 of 470 vs 198 of 854; P < .001). Follow-up CT in 13 patients showed improvement in seven (54%) patients and progression in four (31%) patients.ConclusionPatients with fever and/or cough and with conspicuous ground-glass opacity lesions in the peripheral and posterior lungs on CT images, combined with normal or decreased white blood cells and a history of epidemic exposure, are highly suspected of having 2019 Novel Coronavirus (2019-nCoV) pneumonia.© RSNA, 2020.","year_sort":"2020","published_in_sort":"Radiology","subject_orig_sort":"","resized":false},{"id":"32029004","title":"A rapid advice guideline for the diagnosis and treatment of 2019 novel coronavirus (2019-nCoV) infected pneumonia (standard version).","pmid":"32029004","published_in":"Military Medical Research","paper_abstract":"In December 2019, a new type viral pneumonia cases occurred in Wuhan, Hubei Province; and then named \\"2019 novel coronavirus (2019-nCoV)\\" by the World Health Organization (WHO) on 12 January 2020. For it is a never been experienced respiratory disease before and with infection ability widely and quickly, it attracted the world's attention but without treatment and control manual. For the request from frontline clinicians and public health professionals of 2019-nCoV infected pneumonia management, an evidence-based guideline urgently needs to be developed. Therefore, we drafted this guideline according to the rapid advice guidelines methodology and general rules of WHO guideline development; we also added the first-hand management data of Zhongnan Hospital of Wuhan University. This guideline includes the guideline methodology, epidemiological characteristics, disease screening and population prevention, diagnosis, treatment and control (including traditional Chinese Medicine), nosocomial infection prevention and control, and disease nursing of the 2019-nCoV. Moreover, we also provide a whole process of a successful treatment case of the severe 2019-nCoV infected pneumonia and experience and lessons of hospital rescue for 2019-nCoV infections. This rapid advice guideline is suitable for the first frontline doctors and nurses, managers of hospitals and healthcare sections, community residents, public health persons, relevant researchers, and all person who are interested in the 2019-nCoV.","date":"","year":"2020","authors":"Jin, Ying-Hui;Cai, Lin;Cheng, Zhen-Shun;Cheng, Hong;Deng, Tong;Fan, Yi-Pin;Fang, Cheng;Huang, Di;Huang, Lu-Qi;Huang, Qiao;Han, Yong;Hu, Bo;Hu, Fen;Li, Bing-Hui;Li, Yi-Rong;Liang, Ke;Lin, Li-Kai;Luo, Li-Sha;Ma, Jing;Ma, Lin-Lu;Peng, Zhi-Yong;Pan, Yun-Bao;Pan, Zhen-Yu;Ren, Xue-Qun;Sun, Hui-Min;Wang, Ying;Wang, Yun-Yun;Weng, Hong;Wei, Chao-Jie;Wu, Dong-Fang;Xia, Jian;Xiong, Yong;Xu, Hai-Bo;Yao, Xiao-Mei;Yuan, Yu-Feng;Ye, Tai-Sheng;Zhang, Xiao-Chun;Zhang, Ying-Wen;Zhang, Yin-Gao;Zhang, Hua-Min;Zhao, Yan;Zhao, Ming-Juan;Zi, Hao;Zeng, Xian-Tao;Wang, Yong-Yan;Wang, Xing-Huan;, for the Zhongnan Hospital of Wuhan University Novel Coronavirus Management and Research Team, Evidence-Based Medicine Chapter of China International Exchange and Promotive Association for Medical and Health Care (CPAM)","subject":"2019 novel coronavirus;2019-nCoV;Clinical practice guideline;Evidence-based medicine;Infectious diseases;Pneumonia;Rapid advice guideline;Respiratory disease","publication_type":"Journal Article; Practice Guideline; Research Support, Non-U.S. Gov't","url":"http://www.ncbi.nlm.nih.gov/pubmed/32029004","content":"A rapid advice guideline for the diagnosis and treatment of 2019 novel coronavirus (2019-nCoV) infected pneumonia (standard version). In December 2019, a new type viral pneumonia cases occurred in Wuhan, Hubei Province; and then named \\"2019 novel coronavirus (2019-nCoV)\\" by the World Health Organization (WHO) on 12 January 2020. For it is a never been experienced respiratory disease before and with infection ability widely and quickly, it attracted the world's attention but without treatment and control manual. For the request from frontline clinicians and public health professionals of 2019-nCoV infected pneumonia management, an evidence-based guideline urgently needs to be developed. Therefore, we drafted this guideline according to the rapid advice guidelines methodology and general rules of WHO guideline development; we also added the first-hand management data of Zhongnan Hospital of Wuhan University. This guideline includes the guideline methodology, epidemiological characteristics, disease screening and population prevention, diagnosis, treatment and control (including traditional Chinese Medicine), nosocomial infection prevention and control, and disease nursing of the 2019-nCoV. Moreover, we also provide a whole process of a successful treatment case of the severe 2019-nCoV infected pneumonia and experience and lessons of hospital rescue for 2019-nCoV infections. This rapid advice guideline is suitable for the first frontline doctors and nurses, managers of hospitals and healthcare sections, community residents, public health persons, relevant researchers, and all person who are interested in the 2019-nCoV. Jin, Ying-Hui;Cai, Lin;Cheng, Zhen-Shun;Cheng, Hong;Deng, Tong;Fan, Yi-Pin;Fang, Cheng;Huang, Di;Huang, Lu-Qi;Huang, Qiao;Han, Yong;Hu, Bo;Hu, Fen;Li, Bing-Hui;Li, Yi-Rong;Liang, Ke;Lin, Li-Kai;Luo, Li-Sha;Ma, Jing;Ma, Lin-Lu;Peng, Zhi-Yong;Pan, Yun-Bao;Pan, Zhen-Yu;Ren, Xue-Qun;Sun, Hui-Min;Wang, Ying;Wang, Yun-Yun;Weng, Hong;Wei, Chao-Jie;Wu, Dong-Fang;Xia, Jian;Xiong, Yong;Xu, Hai-Bo;Yao, Xiao-Mei;Yuan, Yu-Feng;Ye, Tai-Sheng;Zhang, Xiao-Chun;Zhang, Ying-Wen;Zhang, Yin-Gao;Zhang, Hua-Min;Zhao, Yan;Zhao, Ming-Juan;Zi, Hao;Zeng, Xian-Tao;Wang, Yong-Yan;Wang, Xing-Huan;, for the Zhongnan Hospital of Wuhan University Novel Coronavirus Management and Research Team, Evidence-Based Medicine Chapter of China International Exchange and Promotive Association for Medical and Health Care (CPAM) 2019 novel coronavirus;2019-nCoV;Clinical practice guideline;Evidence-based medicine;Infectious diseases;Pneumonia;Rapid advice guideline;Respiratory disease Military Medical Research","doi":"10.1186/s40779-020-0233-6","subject_orig":"2019 novel coronavirus;2019-nCoV;Clinical practice guideline;Evidence-based medicine;Infectious diseases;Pneumonia;Rapid advice guideline;Respiratory disease","readers":175,"pmcid":"PMC7003341","lang_detected":"english","cluster_labels":"Infectious diseases, Molecular diagnosis, Rapid advice guideline","x":"-0.23416750","y":"0.20729860","area_uri":8,"area":"Infectious diseases, Molecular diagnosis, Rapid advice guideline","file_hash":"hashHash","comments":[],"authors_string":"Ying-Hui Jin, Lin Cai, Zhen-Shun Cheng, Hong Cheng, Tong Deng, Yi-Pin Fan, Cheng Fang, Di Huang, Lu-Qi Huang, Qiao Huang, Yong Han, Bo Hu, Fen Hu, Bing-Hui Li, Yi-Rong Li, Ke Liang, Li-Kai Lin, Li-Sha Luo, Jing Ma, Lin-Lu Ma, Zhi-Yong Peng, Yun-Bao Pan, Zhen-Yu Pan, Xue-Qun Ren, Hui-Min Sun, Ying Wang, Yun-Yun Wang, Hong Weng, Chao-Jie Wei, Dong-Fang Wu, Jian Xia, Yong Xiong, Hai-Bo Xu, Xiao-Mei Yao, Yu-Feng Yuan, Tai-Sheng Ye, Xiao-Chun Zhang, Ying-Wen Zhang, Yin-Gao Zhang, Hua-Min Zhang, Yan Zhao, Ming-Juan Zhao, Hao Zi, Xian-Tao Zeng, Yong-Yan Wang, Xing-Huan Wang, for the Zhongnan Hospital of Wuhan University Novel Coronavirus Management and Research Team ","authors_short_string":"Y. Jin, L. Cai, Z. Cheng, H. Cheng, T. Deng, Y. Fan, C. Fang, D. Huang, L. Huang, Q. Huang, Y. Han, B. Hu, F. Hu, B. Li, Y. Li, K. Liang, L. Lin, L. Luo, J. Ma, L. Ma, Z. Peng, Y. Pan, Z. Pan, X. Ren, H. Sun, Y. Wang, Y. Wang, H. Weng, C. Wei, D. Wu, J. Xia, Y. Xiong, H. Xu, X. Yao, Y. Yuan, T. Ye, X. Zhang, Y. Zhang, Y. Zhang, H. Zhang, Y. Zhao, M. Zhao, H. Zi, X. Zeng, Y. Wang, X. Wang, f. ","safe_id":"32029004","num_readers":175,"internal_readers":176,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7003341/pdf/","outlink":"http://www.ncbi.nlm.nih.gov/pubmed/32029004","comments_for_filtering":"","title_sort":"A rapid advice guideline for the diagnosis and treatment of 2019 novel coronavirus (2019-nCoV) infected pneumonia (standard version).","authors_string_sort":"Ying-Hui Jin, Lin Cai, Zhen-Shun Cheng, Hong Cheng, Tong Deng, Yi-Pin Fan, Cheng Fang, Di Huang, Lu-Qi Huang, Qiao Huang, Yong Han, Bo Hu, Fen Hu, Bing-Hui Li, Yi-Rong Li, Ke Liang, Li-Kai Lin, Li-Sha Luo, Jing Ma, Lin-Lu Ma, Zhi-Yong Peng, Yun-Bao Pan, Zhen-Yu Pan, Xue-Qun Ren, Hui-Min Sun, Ying Wang, Yun-Yun Wang, Hong Weng, Chao-Jie Wei, Dong-Fang Wu, Jian Xia, Yong Xiong, Hai-Bo Xu, Xiao-Mei Yao, Yu-Feng Yuan, Tai-Sheng Ye, Xiao-Chun Zhang, Ying-Wen Zhang, Yin-Gao Zhang, Hua-Min Zhang, Yan Zhao, Ming-Juan Zhao, Hao Zi, Xian-Tao Zeng, Yong-Yan Wang, Xing-Huan Wang, for the Zhongnan Hospital of Wuhan University Novel Coronavirus Management and Research Team ","paper_abstract_sort":"In December 2019, a new type viral pneumonia cases occurred in Wuhan, Hubei Province; and then named \\"2019 novel coronavirus (2019-nCoV)\\" by the World Health Organization (WHO) on 12 January 2020. For it is a never been experienced respiratory disease before and with infection ability widely and quickly, it attracted the world's attention but without treatment and control manual. For the request from frontline clinicians and public health professionals of 2019-nCoV infected pneumonia management, an evidence-based guideline urgently needs to be developed. Therefore, we drafted this guideline according to the rapid advice guidelines methodology and general rules of WHO guideline development; we also added the first-hand management data of Zhongnan Hospital of Wuhan University. This guideline includes the guideline methodology, epidemiological characteristics, disease screening and population prevention, diagnosis, treatment and control (including traditional Chinese Medicine), nosocomial infection prevention and control, and disease nursing of the 2019-nCoV. Moreover, we also provide a whole process of a successful treatment case of the severe 2019-nCoV infected pneumonia and experience and lessons of hospital rescue for 2019-nCoV infections. This rapid advice guideline is suitable for the first frontline doctors and nurses, managers of hospitals and healthcare sections, community residents, public health persons, relevant researchers, and all person who are interested in the 2019-nCoV.","year_sort":"2020","published_in_sort":"Military Medical Research","subject_orig_sort":"2019 novel coronavirus;2019-nCoV;Clinical practice guideline;Evidence-based medicine;Infectious diseases;Pneumonia;Rapid advice guideline;Respiratory disease","resized":false},{"id":"32031583","title":"Molecular Diagnosis of a Novel Coronavirus (2019-nCoV) Causing an Outbreak of Pneumonia.","pmid":"32031583","published_in":"Clinical chemistry","paper_abstract":"A novel coronavirus of zoonotic origin (2019-nCoV) has recently been identified in patients with acute respiratory disease. This virus is genetically similar to SARS coronavirus and bat SARS-like coronaviruses. The outbreak was initially detected in Wuhan, a major city of China, but has subsequently been detected in other provinces of China. Travel-associated cases have also been reported in a few other countries. Outbreaks in health care workers indicate human-to-human transmission. Molecular tests for rapid detection of this virus are urgently needed for early identification of infected patients.We developed two 1-step quantitative real-time reverse-transcription PCR assays to detect two different regions (ORF1b and N) of the viral genome. The primer and probe sets were designed to react with this novel coronavirus and its closely related viruses, such as SARS coronavirus. These assays were evaluated using a panel of positive and negative controls. In addition, respiratory specimens from two 2019-nCoV-infected patients were tested.Using RNA extracted from cells infected by SARS coronavirus as a positive control, these assays were shown to have a dynamic range of at least seven orders of magnitude (2x10-4-2000 TCID50/reaction). Using DNA plasmids as positive standards, the detection limits of these assays were found to be below 10 copies per reaction. All negative control samples were negative in the assays. Samples from two 2019-nCoV-infected patients were positive in the tests.The established assays can achieve a rapid detection of 2019n-CoV in human samples, thereby allowing early identification of patients.© American Association for Clinical Chemistry 2020. All rights reserved. For permissions, please email: journals.permissions@oup.com.","date":"","year":"2020","authors":"Chu, Daniel K W;Pan, Yang;Cheng, Samuel M S;Hui, Kenrie P Y;Krishnan, Pavithra;Liu, Yingzhi;Ng, Daisy Y M;Wan, Carrie K C;Yang, Peng;Wang, Quanyi;Peiris, Malik;Poon, Leo L M","subject":"causing outbreak; diagnosis novel; molecular diagnosis","publication_type":"Journal Article; Research Support, N.I.H., Extramural","url":"http://www.ncbi.nlm.nih.gov/pubmed/32031583","content":"Molecular Diagnosis of a Novel Coronavirus (2019-nCoV) Causing an Outbreak of Pneumonia. A novel coronavirus of zoonotic origin (2019-nCoV) has recently been identified in patients with acute respiratory disease. This virus is genetically similar to SARS coronavirus and bat SARS-like coronaviruses. The outbreak was initially detected in Wuhan, a major city of China, but has subsequently been detected in other provinces of China. Travel-associated cases have also been reported in a few other countries. Outbreaks in health care workers indicate human-to-human transmission. Molecular tests for rapid detection of this virus are urgently needed for early identification of infected patients.We developed two 1-step quantitative real-time reverse-transcription PCR assays to detect two different regions (ORF1b and N) of the viral genome. The primer and probe sets were designed to react with this novel coronavirus and its closely related viruses, such as SARS coronavirus. These assays were evaluated using a panel of positive and negative controls. In addition, respiratory specimens from two 2019-nCoV-infected patients were tested.Using RNA extracted from cells infected by SARS coronavirus as a positive control, these assays were shown to have a dynamic range of at least seven orders of magnitude (2x10-4-2000 TCID50/reaction). Using DNA plasmids as positive standards, the detection limits of these assays were found to be below 10 copies per reaction. All negative control samples were negative in the assays. Samples from two 2019-nCoV-infected patients were positive in the tests.The established assays can achieve a rapid detection of 2019n-CoV in human samples, thereby allowing early identification of patients.© American Association for Clinical Chemistry 2020. All rights reserved. For permissions, please email: journals.permissions@oup.com. Chu, Daniel K W;Pan, Yang;Cheng, Samuel M S;Hui, Kenrie P Y;Krishnan, Pavithra;Liu, Yingzhi;Ng, Daisy Y M;Wan, Carrie K C;Yang, Peng;Wang, Quanyi;Peiris, Malik;Poon, Leo L M Clinical chemistry","doi":"10.1093/clinchem/hvaa029","subject_orig":"","readers":82,"pmcid":"PMC7108203","lang_detected":"english","cluster_labels":"Infectious diseases, Molecular diagnosis, Rapid advice guideline","x":"-0.17973999","y":"0.06916063","area_uri":8,"area":"Infectious diseases, Molecular diagnosis, Rapid advice guideline","file_hash":"hashHash","comments":[],"authors_string":"Daniel K W Chu, Yang Pan, Samuel M S Cheng, Kenrie P Y Hui, Pavithra Krishnan, Yingzhi Liu, Daisy Y M Ng, Carrie K C Wan, Peng Yang, Quanyi Wang, Malik Peiris, Leo L M Poon","authors_short_string":"D. Chu, Y. Pan, S. Cheng, K. Hui, P. Krishnan, Y. Liu, D. Ng, C. Wan, P. Yang, Q. Wang, M. Peiris, L. Poon","safe_id":"32031583","num_readers":82,"internal_readers":83,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7108203/pdf/","outlink":"http://www.ncbi.nlm.nih.gov/pubmed/32031583","comments_for_filtering":"","title_sort":"Molecular Diagnosis of a Novel Coronavirus (2019-nCoV) Causing an Outbreak of Pneumonia.","authors_string_sort":"Daniel K W Chu, Yang Pan, Samuel M S Cheng, Kenrie P Y Hui, Pavithra Krishnan, Yingzhi Liu, Daisy Y M Ng, Carrie K C Wan, Peng Yang, Quanyi Wang, Malik Peiris, Leo L M Poon","paper_abstract_sort":"A novel coronavirus of zoonotic origin (2019-nCoV) has recently been identified in patients with acute respiratory disease. This virus is genetically similar to SARS coronavirus and bat SARS-like coronaviruses. The outbreak was initially detected in Wuhan, a major city of China, but has subsequently been detected in other provinces of China. Travel-associated cases have also been reported in a few other countries. Outbreaks in health care workers indicate human-to-human transmission. Molecular tests for rapid detection of this virus are urgently needed for early identification of infected patients.We developed two 1-step quantitative real-time reverse-transcription PCR assays to detect two different regions (ORF1b and N) of the viral genome. The primer and probe sets were designed to react with this novel coronavirus and its closely related viruses, such as SARS coronavirus. These assays were evaluated using a panel of positive and negative controls. In addition, respiratory specimens from two 2019-nCoV-infected patients were tested.Using RNA extracted from cells infected by SARS coronavirus as a positive control, these assays were shown to have a dynamic range of at least seven orders of magnitude (2x10-4-2000 TCID50/reaction). Using DNA plasmids as positive standards, the detection limits of these assays were found to be below 10 copies per reaction. All negative control samples were negative in the assays. Samples from two 2019-nCoV-infected patients were positive in the tests.The established assays can achieve a rapid detection of 2019n-CoV in human samples, thereby allowing early identification of patients.© American Association for Clinical Chemistry 2020. All rights reserved. For permissions, please email: journals.permissions@oup.com.","year_sort":"2020","published_in_sort":"Clinical chemistry","subject_orig_sort":"","resized":false},{"id":"32036774","title":"Emerging novel coronavirus (2019-nCoV)-current scenario, evolutionary perspective based on genome analysis and recent developments.","pmid":"32036774","published_in":"The veterinary quarterly","paper_abstract":"Coronaviruses are the well-known cause of severe respiratory, enteric and systemic infections in a wide range of hosts including man, mammals, fish, and avian. The scientific interest on coronaviruses increased after the emergence of Severe Acute Respiratory Syndrome coronavirus (SARS-CoV) outbreaks in 2002-2003 followed by Middle East Respiratory Syndrome CoV (MERS-CoV). This decade's first CoV, named 2019-nCoV, emerged from Wuhan, China, and declared as 'Public Health Emergency of International Concern' on January 30th, 2020 by the World Health Organization (WHO). As on February 4, 2020, 425 deaths reported in China only and one death outside China (Philippines). In a short span of time, the virus spread has been noted in 24 countries. The zoonotic transmission (animal-to-human) is suspected as the route of disease origin. The genetic analyses predict bats as the most probable source of 2019-nCoV though further investigations needed to confirm the origin of the novel virus. The ongoing nCoV outbreak highlights the hidden wild animal reservoir of the deadly viruses and possible threat of spillover zoonoses as well. The successful virus isolation attempts have made doors open for developing better diagnostics and effective vaccines helping in combating the spread of the virus to newer areas.","date":"","year":"2020","authors":"Malik, Yashpal Singh;Sircar, Shubhankar;Bhat, Sudipta;Sharun, Khan;Dhama, Kuldeep;Dadar, Maryam;Tiwari, Ruchi;Chaicumpa, Wanpen","subject":"2019-nCoV;Coronavirus;Middle East Respiratory Syndrome CoV;Public Health Emergency;Severe Acute Respiratory Syndrome CoV;genetic analyses;reservoir host;therapeutics;vaccines;zoonoses","publication_type":"Journal Article; Review","url":"http://www.ncbi.nlm.nih.gov/pubmed/32036774","content":"Emerging novel coronavirus (2019-nCoV)-current scenario, evolutionary perspective based on genome analysis and recent developments. Coronaviruses are the well-known cause of severe respiratory, enteric and systemic infections in a wide range of hosts including man, mammals, fish, and avian. The scientific interest on coronaviruses increased after the emergence of Severe Acute Respiratory Syndrome coronavirus (SARS-CoV) outbreaks in 2002-2003 followed by Middle East Respiratory Syndrome CoV (MERS-CoV). This decade's first CoV, named 2019-nCoV, emerged from Wuhan, China, and declared as 'Public Health Emergency of International Concern' on January 30th, 2020 by the World Health Organization (WHO). As on February 4, 2020, 425 deaths reported in China only and one death outside China (Philippines). In a short span of time, the virus spread has been noted in 24 countries. The zoonotic transmission (animal-to-human) is suspected as the route of disease origin. The genetic analyses predict bats as the most probable source of 2019-nCoV though further investigations needed to confirm the origin of the novel virus. The ongoing nCoV outbreak highlights the hidden wild animal reservoir of the deadly viruses and possible threat of spillover zoonoses as well. The successful virus isolation attempts have made doors open for developing better diagnostics and effective vaccines helping in combating the spread of the virus to newer areas. Malik, Yashpal Singh;Sircar, Shubhankar;Bhat, Sudipta;Sharun, Khan;Dhama, Kuldeep;Dadar, Maryam;Tiwari, Ruchi;Chaicumpa, Wanpen 2019-nCoV;Coronavirus;Middle East Respiratory Syndrome CoV;Public Health Emergency;Severe Acute Respiratory Syndrome CoV;genetic analyses;reservoir host;therapeutics;vaccines;zoonoses The veterinary quarterly","doi":"10.1080/01652176.2020.1727993","subject_orig":"2019-nCoV;Coronavirus;Middle East Respiratory Syndrome CoV;Public Health Emergency;Severe Acute Respiratory Syndrome CoV;genetic analyses;reservoir host;therapeutics;vaccines;zoonoses","readers":21,"pmcid":"PMC7054940","lang_detected":"english","cluster_labels":"Zoonoses, 2019 novel coronavirus disease, Wuhan China 2020","x":"-0.18647478","y":"-0.05896987","area_uri":4,"area":"Zoonoses, 2019 novel coronavirus disease, Wuhan China 2020","file_hash":"hashHash","comments":[],"authors_string":"Yashpal Singh Malik, Shubhankar Sircar, Sudipta Bhat, Khan Sharun, Kuldeep Dhama, Maryam Dadar, Ruchi Tiwari, Wanpen Chaicumpa","authors_short_string":"Y. Malik, S. Sircar, S. Bhat, K. Sharun, K. Dhama, M. Dadar, R. Tiwari, W. Chaicumpa","safe_id":"32036774","num_readers":21,"internal_readers":22,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7054940/pdf/","outlink":"http://www.ncbi.nlm.nih.gov/pubmed/32036774","comments_for_filtering":"","title_sort":"Emerging novel coronavirus (2019-nCoV)-current scenario, evolutionary perspective based on genome analysis and recent developments.","authors_string_sort":"Yashpal Singh Malik, Shubhankar Sircar, Sudipta Bhat, Khan Sharun, Kuldeep Dhama, Maryam Dadar, Ruchi Tiwari, Wanpen Chaicumpa","paper_abstract_sort":"Coronaviruses are the well-known cause of severe respiratory, enteric and systemic infections in a wide range of hosts including man, mammals, fish, and avian. The scientific interest on coronaviruses increased after the emergence of Severe Acute Respiratory Syndrome coronavirus (SARS-CoV) outbreaks in 2002-2003 followed by Middle East Respiratory Syndrome CoV (MERS-CoV). This decade's first CoV, named 2019-nCoV, emerged from Wuhan, China, and declared as 'Public Health Emergency of International Concern' on January 30th, 2020 by the World Health Organization (WHO). As on February 4, 2020, 425 deaths reported in China only and one death outside China (Philippines). In a short span of time, the virus spread has been noted in 24 countries. The zoonotic transmission (animal-to-human) is suspected as the route of disease origin. The genetic analyses predict bats as the most probable source of 2019-nCoV though further investigations needed to confirm the origin of the novel virus. The ongoing nCoV outbreak highlights the hidden wild animal reservoir of the deadly viruses and possible threat of spillover zoonoses as well. The successful virus isolation attempts have made doors open for developing better diagnostics and effective vaccines helping in combating the spread of the virus to newer areas.","year_sort":"2020","published_in_sort":"The veterinary quarterly","subject_orig_sort":"2019-nCoV;Coronavirus;Middle East Respiratory Syndrome CoV;Public Health Emergency;Severe Acute Respiratory Syndrome CoV;genetic analyses;reservoir host;therapeutics;vaccines;zoonoses","resized":false,"resulttype":"dataset"},{"id":"32046819","title":"Incubation period of 2019 novel coronavirus (2019-nCoV) infections among travellers from Wuhan, China, 20-28 January 2020.","pmid":"32046819","published_in":"Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin","paper_abstract":"A novel coronavirus (2019-nCoV) is causing an outbreak of viral pneumonia that started in Wuhan, China. Using the travel history and symptom onset of 88 confirmed cases that were detected outside Wuhan in the early outbreak phase, we estimate the mean incubation period to be 6.4 days (95% credible interval: 5.6-7.7), ranging from 2.1 to 11.1 days (2.5th to 97.5th percentile). These values should help inform 2019-nCoV case definitions and appropriate quarantine durations.","date":"","year":"2020","authors":"Backer, Jantien A;Klinkenberg, Don;Wallinga, Jacco","subject":"2019-nCoV;Wuhan;exposure;incubation period;novel coronavirus;symptom onset","publication_type":"Journal Article","url":"http://www.ncbi.nlm.nih.gov/pubmed/32046819","content":"Incubation period of 2019 novel coronavirus (2019-nCoV) infections among travellers from Wuhan, China, 20-28 January 2020. A novel coronavirus (2019-nCoV) is causing an outbreak of viral pneumonia that started in Wuhan, China. Using the travel history and symptom onset of 88 confirmed cases that were detected outside Wuhan in the early outbreak phase, we estimate the mean incubation period to be 6.4 days (95% credible interval: 5.6-7.7), ranging from 2.1 to 11.1 days (2.5th to 97.5th percentile). These values should help inform 2019-nCoV case definitions and appropriate quarantine durations. Backer, Jantien A;Klinkenberg, Don;Wallinga, Jacco 2019-nCoV;Wuhan;exposure;incubation period;novel coronavirus;symptom onset Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin","link":"10.2807/1560-7917.ES.2020.25.5.2000062","subject_orig":"2019-nCoV;Wuhan;exposure;incubation period;novel coronavirus;symptom onset","readers":95,"pmcid":"PMC7014672","lang_detected":"english","cluster_labels":"Basic reproduction number, Human-to-human transmission, January 2020","x":"-0.13351386","y":"0.30095717","area_uri":9,"area":"Basic reproduction number, Human-to-human transmission, January 2020","file_hash":"hashHash","comments":[],"authors_string":"Jantien A Backer, Don Klinkenberg, Jacco Wallinga","authors_short_string":"J. Backer, D. Klinkenberg, J. Wallinga","safe_id":"32046819","num_readers":95,"internal_readers":96,"num_subentries":0,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7014672/pdf/","outlink":"http://www.ncbi.nlm.nih.gov/pubmed/32046819","comments_for_filtering":"","title_sort":"Incubation period of 2019 novel coronavirus (2019-nCoV) infections among travellers from Wuhan, China, 20-28 January 2020.","authors_string_sort":"Jantien A Backer, Don Klinkenberg, Jacco Wallinga","paper_abstract_sort":"A novel coronavirus (2019-nCoV) is causing an outbreak of viral pneumonia that started in Wuhan, China. Using the travel history and symptom onset of 88 confirmed cases that were detected outside Wuhan in the early outbreak phase, we estimate the mean incubation period to be 6.4 days (95% credible interval: 5.6-7.7), ranging from 2.1 to 11.1 days (2.5th to 97.5th percentile). These values should help inform 2019-nCoV case definitions and appropriate quarantine durations.","year_sort":"2020","published_in_sort":"Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin","subject_orig_sort":"2019-nCoV;Wuhan;exposure;incubation period;novel coronavirus;symptom onset","resized":false,"resulttype":"publication"}]`;
-export default JSON.parse(data);
+const rawData = JSON.parse(data);
+rawData.forEach((paper) => {
+ paper.resulttype = paper.resulttype ? [paper.resulttype] : [];
+ paper.keywords = paper.subject_orig;
+ paper.list_link = { address: paper.link, isDoi: false };
+ paper.tags = [];
+});
+
+export default rawData;
diff --git a/vis/test/data/simple.js b/vis/test/data/simple.js
index 77981eed7..445c4ff2a 100644
--- a/vis/test/data/simple.js
+++ b/vis/test/data/simple.js
@@ -12,9 +12,14 @@ const initialTestData = [
url: "https://doi.org/10.1038/nrmicro2090",
readers: 0,
subject_orig: "Spike protein, vaccines",
+ keywords: "Spike protein, vaccines",
subject: "Spike protein, vaccines",
oa_state: 3,
link: "https://www.nature.com/articles/nrmicro2090.pdf",
+ list_link: {
+ address: "https://www.nature.com/articles/nrmicro2090.pdf",
+ isDoi: false,
+ },
relevance: 3,
comments: [
{
@@ -23,8 +28,8 @@ const initialTestData = [
author: "ReFigure Team",
},
],
- tags: "Peer-reviewed",
- resulttype: "dataset",
+ tags: ["Peer-reviewed"],
+ resulttype: ["dataset"],
lang_detected: "english",
cluster_labels:
"Antibody-dependent enhancement, Coronavirus entry, Spike protein",
diff --git a/vis/test/data/viper.js b/vis/test/data/viper.js
index b1d6a996a..5de8f11bb 100644
--- a/vis/test/data/viper.js
+++ b/vis/test/data/viper.js
@@ -1,3 +1,11 @@
const data = `[{"doi":"","id":"erc_________::47a5fc4a4f37e441d881c0b3a35321dd","subject":"ari catalyzed; mild ari","title":"Mild ArI-Catalyzed C(sp","year":"2014-10-06","publisher":"","resulttype":"publication","language":"","published_in":"Angewandte Chemie - International Edition","link":"","fulltext":"","paper_abstract":"","project_id":"277883","accessright":"Closed Access","authors":"Xueqiang Wang; Joan Gallardo-Donaire; Ruben Martin","oa_state":0,"url":"erc_________::47a5fc4a4f37e441d881c0b3a35321dd","lang_detected":"scots","cluster_labels":"Shift of α-aryl, Advances synthesis, Application benzocyclobutenones","x":184.28385267347852,"y":603.1652977347561,"area_uri":10,"area":"Shift of α-aryl, Advances synthesis, Application benzocyclobutenones","cited_by_tweeters_count":"N/A","readers.mendeley":"N/A","citation_count":"N/A","file_hash":"hashHash","readers":"n/a","comments":[],"content_based":0,"authors_string":"Xueqiang Wang, Joan Gallardo-Donaire, Ruben Martin","authors_short_string":"Xueqiang Wang, Joan Gallardo-Donaire, Ruben Martin","safe_id":"erc__005f__005f__005f__005f__005f__005f__005f__005f__005f__003a__003a47a5fc4a4f37e441d881c0b3a35321dd","subject_orig":"ari catalyzed; mild ari","num_readers":0,"internal_readers":1,"num_subentries":0,"tweets":"n/a","citations":0,"paper_selected":false,"oa":false,"free_access":false,"oa_link":"","outlink":"https://www.openaire.eu/search/publication?articleId=erc_________::47a5fc4a4f37e441d881c0b3a35321dd","comments_for_filtering":"","diameter":37.2,"width":27.684552760311327,"height":36.91273701374844,"orig_x":"0.08561058","orig_y":"0.32081276","resized":false},{"doi":"","id":"erc_________::5abacacb0165732daedb470226c382f3","subject":"arylation inert; bonds low; catalyzed stereoselective","title":"Ni-Catalyzed Stereoselective Arylation of Inert C\\u0001O bonds at Low Temperatures","year":"2013-11-04","publisher":"","resulttype":"publication","language":"","published_in":"Organic Letters","link":"","fulltext":"","paper_abstract":"","project_id":"277883","accessright":"Closed Access","authors":"Josep Cornella; Ruben Martin","oa_state":0,"url":"erc_________::5abacacb0165732daedb470226c382f3","lang_detected":"english","cluster_labels":"Arylation of inert, Inert carbon, NiCatalyzed stereoselective arylation","x":340.73030031422,"y":312.3482711642687,"area_uri":12,"area":"Arylation of inert, Inert carbon, NiCatalyzed stereoselective arylation","cited_by_tweeters_count":0,"readers.mendeley":"N/A","citation_count":"N/A","file_hash":"hashHash","readers":"n/a","comments":[],"content_based":0,"authors_string":"Josep Cornella, Ruben Martin","authors_short_string":"Josep Cornella, Ruben Martin","safe_id":"erc__005f__005f__005f__005f__005f__005f__005f__005f__005f__003a__003a5abacacb0165732daedb470226c382f3","subject_orig":"arylation inert; 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Martin","safe_id":"dedup__005fwf__005f001__003a__003ab2c1aab2e12e3e5163f83500b1410d72","subject_orig":"General Chemistry","num_readers":0,"internal_readers":1,"num_subentries":0,"tweets":8,"citations":41,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/2072/226301","outlink":"https://www.openaire.eu/search/publication?articleId=dedup_wf_001::b2c1aab2e12e3e5163f83500b1410d72","comments_for_filtering":"","diameter":37.2,"width":27.684552760311327,"height":36.91273701374844,"orig_x":"-0.28341012","orig_y":"0.26771344","resized":false},{"doi":"10.1002/chem.201402509","id":"dedup_wf_001::d0f1cdf5bddcc4d99af9c34b7cf7ff11","subject":"General Chemistry","title":"Metal‐Catalyzed Reductive Coupling Reactions of Organic Halides with Carbonyl‐Type Compounds","year":"2014-06-06","publisher":"Wiley","resulttype":"publication","language":"","published_in":"Chemistry A European Journal","link":"https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002%2Fchem.201402509","fulltext":"","paper_abstract":"<p> Metal-catalyzed reductive coupling reactions of aryl halides and (pseudo)halides with carbonyl-type compounds have undergone an impressive development within the last years. These methodologies have shown to be a powerful alternate strategy, practicality aside, to the use of stoichiometric, well-defined, and, in some cases, air-sensitive organometallic species. In this Minireview, the recent findings in this field are summarized, with particular emphasis on the mechanistic interpretation of the results and future aspects of this area of expertise.</p>","project_id":"277883","accessright":"Open Access","authors":"Ruben Martin; arkaitz correa","oa_state":1,"url":"dedup_wf_001::d0f1cdf5bddcc4d99af9c34b7cf7ff11","lang_detected":"english","cluster_labels":"Carbonyl type compounds, Carboxylation of organic, Catalyzed reductive coupling","x":5,"y":561.559603573135,"area_uri":9,"area":"Carbonyl type compounds, Carboxylation of organic, Catalyzed reductive coupling","cited_by_tweeters_count":"3","readers.mendeley":"92","citation_count":"219","file_hash":"hashHash","readers":92,"comments":[],"content_based":0,"authors_string":"Ruben Martin, arkaitz correa","authors_short_string":"Ruben Martin, arkaitz correa","safe_id":"dedup__005fwf__005f001__003a__003ad0f1cdf5bddcc4d99af9c34b7cf7ff11","subject_orig":"General Chemistry","num_readers":0,"internal_readers":1,"num_subentries":0,"tweets":3,"citations":219,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002%2Fchem.201402509","outlink":"https://www.openaire.eu/search/publication?articleId=dedup_wf_001::d0f1cdf5bddcc4d99af9c34b7cf7ff11","comments_for_filtering":"","diameter":37.2,"width":27.684552760311327,"height":36.91273701374844,"orig_x":"-0.01394707","orig_y":"0.26909992","resized":false},{"doi":"10.1007/s41061-016-0045-z","id":"doiboost____::291b962d01254b0845b67925dcc78342","subject":"ni fe; carboxylation unsaturated; fe catalyzed","title":"Ni- and Fe-catalyzed Carboxylation of Unsaturated Hydrocarbons with CO2","year":"2016-06-30","publisher":"Springer Science and Business Media LLC","resulttype":"publication","language":"","published_in":"Topics in Current Chemistry","link":"http://link.springer.com/content/pdf/10.1007/s41061-016-0045-z.pdf","fulltext":"","paper_abstract":"The sustainable utilization of available feedstock materials for preparing valuable compounds holds great promise to revolutionize approaches in organic synthesis. In this regard, the implementation of abundant and inexpensive carbon dioxide (CO2) as a C1 building block has recently attracted considerable attention. Among the different alternatives in CO2 fixation, the preparation of carboxylic acids, relevant motifs in pharmaceuticals and agrochemicals, is particularly appealing, thus providing a rapid and unconventional entry to building blocks that are typically prepared via waste-producing protocols. While significant advances have been realized, the utilization of simple unsaturated hydrocarbons as coupling partners in carboxylation events is undoubtedly of utmost academic and industrial relevance, as two available feedstock materials can be combined in a catalytic fashion. This review article aims to describe the main achievements on the direct carboxylation of unsaturated hydrocarbons with CO2 by using cheap and available Ni or Fe catalytic species.","project_id":"277883","accessright":"Open Access","authors":"Manuel van Gemmeren; Eloisa Serrano; Francisco Julia-Hernandez; Morgane Gaydou","oa_state":1,"url":"doiboost____::291b962d01254b0845b67925dcc78342","lang_detected":"english","cluster_labels":"Carboxylation of unsaturated, Hydrocarbons with CO2, Unsaturated hydrocarbons","x":-926.3450360431225,"y":266.922634192179,"area_uri":7,"area":"Carboxylation of unsaturated, Hydrocarbons with CO2, Unsaturated hydrocarbons","cited_by_tweeters_count":"3","readers.mendeley":"47","citation_count":"46","file_hash":"hashHash","readers":47,"comments":[],"content_based":0,"authors_string":"Manuel van Gemmeren, Eloisa Serrano, Francisco Julia-Hernandez, Morgane Gaydou","authors_short_string":"Manuel van Gemmeren, Eloisa Serrano, Francisco Julia-Hernandez, Morgane Gaydou","safe_id":"doiboost__005f__005f__005f__005f__003a__003a291b962d01254b0845b67925dcc78342","subject_orig":"ni fe; carboxylation unsaturated; fe catalyzed","num_readers":0,"internal_readers":1,"num_subentries":0,"tweets":3,"citations":46,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://link.springer.com/content/pdf/10.1007/s41061-016-0045-z.pdf","outlink":"https://www.openaire.eu/search/publication?articleId=doiboost____::291b962d01254b0845b67925dcc78342","comments_for_filtering":"","diameter":37.2,"width":27.684552760311327,"height":36.91273701374844,"orig_x":"-0.53112986","orig_y":"-0.09711232","resized":false},{"doi":"10.1021/acs.orglett.8b01696","id":"od_______272::f8c282c3bf9f8ec88cae7b14d56a8f15","subject":"Quimica","title":"A Mild & Ligand-Free Ni-Catalyzed Silylation via C–OMe Cleavage","year":"2016-12-28","publisher":"J. Am. Chem. Soc","resulttype":"publication","language":"","published_in":"","link":"http://hdl.handle.net/2072/326407","fulltext":"","paper_abstract":"Metal-catalyzed transformations that forge carbon–heteroatom bonds are of central importance in organic synthesis. Despite the formidable potential of aryl methyl ethers as coupling partners, the scarcity of metal-catalyzed C–heteroatom bond formations via C–OMe cleavage is striking, with isolated precedents requiring specialized, yet expensive, ligands, high temperatures, and π-extended backbones. We report an unprecedented catalytic ipso-silylation of aryl methyl ethers under mild conditions and without recourse to external ligands. The method is distinguished by its wide scope, which includes the use of benzyl methyl ethers, vinyl methyl ethers, and unbiased anisole derivatives, thus representing a significant step forward for designing new C–heteroatom bond formations via C–OMe scission. Applications of this transformation in orthogonal silylation techniques as well as in further derivatizations are also described. Preliminary mechanistic experiments suggest the intermediacy of Ni(0)-ate complexes, leaving some doubt that a canonical catalytic cycle consisting of an initial oxidative addition of the C–OMe bond to Ni(0) species comes into play.","project_id":"277883","accessright":"Open Access","authors":"Zarate, Cayetana; Nakajima, Masaki; Martin, Ruben","oa_state":1,"url":"od_______272::f8c282c3bf9f8ec88cae7b14d56a8f15","lang_detected":"english","cluster_labels":"Ligand-free NiCatalyzed silylation","x":176.64611904371225,"y":98.88029338431043,"area_uri":3,"area":"Ligand-free NiCatalyzed silylation","cited_by_tweeters_count":"1","readers.mendeley":"13","citation_count":"15","file_hash":"hashHash","readers":13,"comments":[],"content_based":0,"authors_string":"Cayetana Zarate, Masaki Nakajima, Ruben Martin","authors_short_string":"C. Zarate, M. Nakajima, R. Martin","safe_id":"od__005f__005f__005f__005f__005f__005f__005f272__003a__003af8c282c3bf9f8ec88cae7b14d56a8f15","subject_orig":"Quimica","num_readers":0,"internal_readers":1,"num_subentries":0,"tweets":1,"citations":15,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://hdl.handle.net/2072/326407","outlink":"https://www.openaire.eu/search/publication?articleId=od_______272::f8c282c3bf9f8ec88cae7b14d56a8f15","comments_for_filtering":"","diameter":37.2,"width":27.684552760311327,"height":36.91273701374844,"orig_x":"0.08136929","orig_y":"-0.30597668","resized":false},{"doi":"10.1021/acscatal.6b02124","id":"dedup_wf_001::b1faf0c8cc13c9b8312be82ff2b47136","subject":"Perspective","title":"Metal-Catalyzed Carboxylation of Organic (Pseudo)halides with CO2","year":"2016-08-01","publisher":"American Chemical Society","resulttype":"publication","language":"","published_in":"ACS Catalysis","link":"http://europepmc.org/articles/PMC5057167","fulltext":"","paper_abstract":"The recent years have witnessed the development of metal-catalyzed reductive carboxylation of organic (pseudo)halides with CO2 as C1 source, representing potential powerful alternatives to existing methodologies for preparing carboxylic acids, privileged motifs in a myriad of pharmaceuticals and molecules displaying significant biological properties. While originally visualized as exotic cross-coupling reactions, a close look into the literature data indicates that these processes have become a fertile ground, allowing for the utilization of a variety of coupling partners, even with particularly challenging substrate combinations. As for other related cross-electrophile scenarios, the vast majority of reductive carboxylation of organic (pseudo)halides are characterized by their simplicity, mild conditions, and a broad functional group compatibility, suggesting that these processes could be implemented in late-stage diversification. This perspective describes the evolution of metal-catalyzed reductive carboxylation of organic (pseudo)halides from its inception in the pioneering stoichiometric work of Osakada to the present. Specific emphasis is devoted to the reactivity of these coupling processes, with substrates ranging from aryl-, vinyl-, benzyl- to unactivated alkyl (pseudo)halides. Despite the impressive advances realized, a comprehensive study detailing the mechanistic intricacies of these processes is still lacking. Some recent empirical evidence reveal an intriguing dichotomy exerted by the substitution pattern on the ligands utilized; still, however, some elementary steps within the catalytic cycle of these reactions remain speculative, in many instances invoking a canonical cross-coupling process. Although tentative, we anticipate that these processes might fall into more than one distinct mechanistic category depending on the substrate utilized, suggesting that investigations aimed at unraveling the mechanistic underpinnings of these processes will likely bring new and innovative research grounds in this vibrant area of expertise.","project_id":"277883","accessright":"Open Access","authors":"Daniel Gallego","oa_state":1,"url":"dedup_wf_001::b1faf0c8cc13c9b8312be82ff2b47136","lang_detected":"english","cluster_labels":"Carbonyl type compounds, Carboxylation of organic, Catalyzed reductive coupling","x":-727.3744656887832,"y":130.1432480641113,"area_uri":9,"area":"Carbonyl type compounds, Carboxylation of organic, Catalyzed reductive coupling","cited_by_tweeters_count":"11","readers.mendeley":"100","citation_count":"176","file_hash":"hashHash","readers":100,"comments":[],"content_based":0,"authors_string":"Daniel Gallego","authors_short_string":"Daniel Gallego","safe_id":"dedup__005fwf__005f001__003a__003ab1faf0c8cc13c9b8312be82ff2b47136","subject_orig":"Perspective","num_readers":0,"internal_readers":1,"num_subentries":0,"tweets":11,"citations":176,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"http://europepmc.org/articles/PMC5057167","outlink":"https://www.openaire.eu/search/publication?articleId=dedup_wf_001::b1faf0c8cc13c9b8312be82ff2b47136","comments_for_filtering":"","diameter":37.2,"width":27.684552760311327,"height":36.91273701374844,"orig_x":"-0.42064003","orig_y":"-0.26711911","resized":false},{"doi":"10.1021/acscatal.6b03205","id":"dedup_wf_001::a8dd7802baa799f421aef7d4207116b1","subject":"alkyl iodides; atom transfer; cyclization unactivated","title":"Visible-Light-Promoted Atom Transfer Radical Cyclization of Unactivated Alkyl Iodides","year":"2016-12-13","publisher":"American Chemical Society (ACS)","resulttype":"publication","language":"","published_in":"ACS Catalysis","link":"https://pubs.acs.org/doi/pdf/10.1021/acscatal.6b03205","fulltext":"","paper_abstract":"A visible-light-mediated atom transfer radical cyclization of unactivated alkyl iodides is described. This protocol operates under mild conditions and exhibits high chemoselectivity profile while avoiding parasitic hydrogen atom transfer pathways. Preliminary mechanistic studies challenge the perception that a canonical photoredox catalytic cycle is being operative.","project_id":"277883","accessright":"Open Access","authors":"Ruben Martin; Yangyang Shen; Josep Cornella; Francisco Julia-Hernandez","oa_state":1,"url":"dedup_wf_001::a8dd7802baa799f421aef7d4207116b1","lang_detected":"english","cluster_labels":"Unactivated alkyl iodides, Atom transfer radical, Cyclization of unactivated","x":-411.973824244976,"y":648.0801243312561,"area_uri":1,"area":"Unactivated alkyl iodides, Atom transfer radical, Cyclization of unactivated","cited_by_tweeters_count":"13","readers.mendeley":"45","citation_count":"44","file_hash":"hashHash","readers":45,"comments":[],"content_based":0,"authors_string":"Ruben Martin, Yangyang Shen, Josep Cornella, Francisco Julia-Hernandez","authors_short_string":"Ruben Martin, Yangyang Shen, Josep Cornella, Francisco Julia-Hernandez","safe_id":"dedup__005fwf__005f001__003a__003aa8dd7802baa799f421aef7d4207116b1","subject_orig":"alkyl iodides; atom transfer; cyclization unactivated","num_readers":0,"internal_readers":1,"num_subentries":0,"tweets":13,"citations":44,"paper_selected":false,"oa":true,"free_access":false,"oa_link":"https://pubs.acs.org/doi/pdf/10.1021/acscatal.6b03205","outlink":"https://www.openaire.eu/search/publication?articleId=dedup_wf_001::a8dd7802baa799f421aef7d4207116b1","comments_for_filtering":"","diameter":37.2,"width":27.684552760311327,"height":36.91273701374844,"orig_x":"-0.24549572","orig_y":"0.37663861","resized":false},{"doi":"10.1021/ja311045f","id":"dedup_wf_001::4fc0eff1020eee89ea5ad941f5faa1d8","subject":"benzyl halides; carboxylation benzyl; catalyzed direct","title":"Ni-Catalyzed Direct Carboxylation of Benzyl Halides with CO2","year":"2013-01-14","publisher":"AMER CHEMICAL SOC","resulttype":"publication","language":"","published_in":"Journal of the American Chemical Society","link":"http://dx.doi.org/10.1021/ja311045f","fulltext":"","paper_abstract":"A novel Ni-catalyzed carboxylation of benzyl halides with CO2 has been developed. The described carboxylation reaction proceeds under mild conditions (atmospheric CO2 pressure) at room temperature. Unlike other routes for similar means, our method does not require well-defined and sensitive organometallic reagents and thus is a user-friendly and operationally simple protocol for assembling phenylacetic acids.","project_id":"277883","accessright":"Restricted","authors":"Ruben Martin; arkaitz correa","oa_state":0,"url":"dedup_wf_001::4fc0eff1020eee89ea5ad941f5faa1d8","lang_detected":"english","cluster_labels":"Benzyl halides, Colloid and Surface Chemistry","x":-558.6916783087388,"y":354.7385246860356,"area_uri":13,"area":"Benzyl halides, Colloid and Surface Chemistry","cited_by_tweeters_count":"8","readers.mendeley":"186","citation_count":"201","file_hash":"hashHash","readers":186,"comments":[],"content_based":0,"authors_string":"Ruben Martin, arkaitz correa","authors_short_string":"Ruben Martin, arkaitz correa","safe_id":"dedup__005fwf__005f001__003a__003a4fc0eff1020eee89ea5ad941f5faa1d8","subject_orig":"benzyl halides; carboxylation benzyl; catalyzed direct","num_readers":0,"internal_readers":1,"num_subentries":0,"citations":201,"paper_selected":false,"oa":false,"free_access":false,"oa_link":"http://dx.doi.org/10.1021/ja311045f","outlink":"https://www.openaire.eu/search/publication?articleId=dedup_wf_001::4fc0eff1020eee89ea5ad941f5faa1d8","comments_for_filtering":"","diameter":37.2,"width":27.684552760311327,"height":36.91273701374844,"orig_x":"-0.32696923","orig_y":"0.01203642","resized":false}]`;
-export default JSON.parse(data);
+const rawData = JSON.parse(data);
+rawData.forEach((paper) => {
+ paper.resulttype = [paper.resulttype];
+ paper.keywords = paper.subject_orig;
+ paper.list_link = { address: paper.link, isDoi: false };
+ paper.tags = [];
+});
+
+export default rawData;
diff --git a/vis/test/datamanagers/datamanager.test.js b/vis/test/datamanagers/datamanager.test.js
new file mode 100644
index 000000000..36a598b3c
--- /dev/null
+++ b/vis/test/datamanagers/datamanager.test.js
@@ -0,0 +1,19 @@
+import DataManager from "../../js/datamanagers/DataManager";
+
+const config = {
+ language: "en",
+ localization: { en: {} },
+};
+
+describe("default data manager", () => {
+ it("doesn't crash", () => {
+ const EXPECTED_PAPERS = [];
+
+ const dataManager = new DataManager(config);
+ dataManager.parseData({ data: [] });
+
+ const papers = dataManager.papers;
+
+ expect(papers).toEqual(EXPECTED_PAPERS);
+ });
+});
diff --git a/vis/test/snapshot/__snapshots__/list-base.test.js.snap b/vis/test/snapshot/__snapshots__/list-base.test.js.snap
index 320ca12d3..807fa0231 100644
--- a/vis/test/snapshot/__snapshots__/list-base.test.js.snap
+++ b/vis/test/snapshot/__snapshots__/list-base.test.js.snap
@@ -266,7 +266,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-in, p
style={
Object {
"display": "block",
- "height": undefined,
+ "height": 800,
}
}
>
@@ -279,7 +279,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-in, p
>
-
- Digital
-
-
-
-
-
- Education
-
- And Learning: The Growing Trend In Academic And Business Spaces—An International Overview
+ Electrochemical method for isolation of chitinous 3D scaffolds from cultivated Aplysina aerophoba marine demosponge and its biomimetic application
- (2018)
+ (2014)
@@ -349,7 +332,27 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-in, p
- P. K. Paul, P. S. Aithal
+ K. Nowacki, I. Stępniak, T. Machałowski, M. Wysokowski, I. Petrenko, C. Schimpf, D. Rafaja, E. Langer, A. Richter, J. Ziętek, S. Pantović, A. Voronkina, V. Kovalchuk, V. Ivanenko, Y. Khrunyk, R. Galli, Y. Joseph, M. Gelinsky, T. Jesionowski, H. Ehrlich
+
+
+
+
+
+ in
+
+
+
+
+ Applied Physics A: Materials Science and Processing
+
@@ -364,12 +367,12 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-in, p
- https://doi.org/10.5281/zenodo.1292855
+ https://elar.urfu.ru/handle/10995/90559
@@ -381,183 +384,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-in, p
- Abstract ; The world becomes
-
-
- Digital
-
-
- day by day and thus activities, features and sectors and different spaces are highly associated with
-
-
- Digital
-
-
- Tools, Techniques and Technologies.
-
-
- Education
-
-
- domain becomes highly technology enabled in recent past and this strategy is rising out and as a result, various concepts, areas, and domains have been created viz.
-
-
- Education
-
-
- Technology, E-Learning, Online
-
-
- Education
-
-
- , Blended Learning and as a whole this concept and this area may be called as a
-
-
- Digital
-
-
-
-
-
- Education
-
-
- /
-
-
- Digital
-
-
- Learning. Internationally many universities have started educational programs leading to Bachelors and Masters Degree in respect of
-
-
- Digital
-
-
-
-
-
- Education
-
-
- and its subfields (mentioned above). The awards are offered in different subjects and are tagged with concentration and major in this area. The
-
-
- Digital
-
-
-
-
-
- Education
-
-
- becomes an important area of research as well due to its importance, many universities have started research program leading to PhD and other professional doctorate degrees. This study is concentrated on Masters degrees in the field of
-
-
- Digital
-
-
-
-
-
- Education
-
-
- and
-
-
- Digital
-
-
- Learning which are available internationally, based on selected research methodologies. This paper emphasizes the role, growth and values of
-
-
- Digital
-
-
-
+ Three-dimensional (3D) biopolymer-based scaffolds including chitinous matrices have been widely used for tissue engineering, regenerative medicine and other modern interdisciplinary fields including extreme biomimetics. In this study, we introduce a novel, electrochemically assisted method for 3D chitin scaffolds isolation from the cultivated marine demosponge Aplysina aerophoba which consists of three main steps: (1) decellularization, (2) decalcification and (3) main deproteinization along with desilicification and depigmentation. For the first time, the obtained electrochemically isolated 3D chitinous scaffolds have been further biomineralized ex vivo using hemolymph of Cornu aspersum edible snail aimed to generate calcium carbonates-based layered biomimetic scaffolds. The analysis of prior to, during and post-electrochemical isolation samples as well as samples treated with molluscan hemolymph was conducted employing analytical techniques such as SEM, XRD, ATR–FTIR and Raman spectroscopy. Finally, the use of described method for chitin isolation combined with biomineralization ex vivo resulted in the formation of crystalline (calcite) calcium carbonate-based deposits on the surface of chitinous scaffolds, which could serve as promising biomaterials for the wide range of biomedical, environmental and biomimetic applications. © 2020, The Author(s). ; Politechnika PoznaÅ ska, PUT: 0911/SBAD/0380/2019 ; Deutsche Forschungsgemeinschaft, DFG: HE 394/3 ; Deutscher Akademischer Austauschdienst, DAAD ; Russian Science Foundation, RSF: 18-13-00220 ; PPN/BEK/2018/1/00071 ; 03/32/SBAD/0906 ; Sächsisches Staatsministerium für Wissenschaft und Kunst, SMWK: 02010311 ; This work was performed with the financial support of Poznan University of Technology, Poland (Grant No. 0911/SBAD/0380/2019), as well as by the Ministry of Science and Higher
- and Learning including future growth and stakeholders in this field.
+ (Poland) as financial subsidy to PUT No. 03/32/SBAD/0906. Krzysztof Nowacki was supported by the Erasmus Plus program (2019). Also, this study was partially supported by the DFG Project HE 394/3 and SMWK Project No. 02010311 (Germany). Marcin Wysokowski is financially supported by the Polish National Agency for Academic Exchange (PPN/BEK/2018/1/00071). Tomasz Machałowski is supported by DAAD (Personal Ref. No. 91734605). Yuliya Khrunyk is supported by the Russian Science Foundation (Grant No. 18-13-00220).
@@ -590,38 +417,10 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-in, p
className="keywords"
>
-
- Digital
-
-
- Education; E-Learning; Higher Education; Digitalization; MSc (
-
-
- Digital
-
-
-
-
-
- Education
-
- ); International Universities; Professional Degrees
+ APLYSINA AEROPHOBA; BIOMIMETICS; BIOMINERALIZATION; CHITIN; ELECTROLYSIS; HEMOLYMPH; MARINE SPONGES; SCAFFOLDS; BIOMIMETIC PROCESSES; BIOPOLYMERS; BLOOD; CALCITE; CALCIUM CARBONATE; FOURIER TRANSFORM INFRARED SPECTROSCOPY; BIOMIMETIC SCAFFOLDS; DECELLULARIZATION; DEPROTEINIZATION; DESILICIFICATION; ELECTROCHEMICAL METHODS; INTERDISCIPLINARY FIELDS; THREEDIMENSIONAL (3-D); SCAFFOLDS (BIOLOGY)
@@ -654,9 +453,9 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-in, p
- Digital citizenship, Digital education revolution, Digital literacies
+ Aplysina aerophoba, Bone cements, Cement production
@@ -934,7 +733,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
style={
Object {
"display": "block",
- "height": undefined,
+ "height": 800,
}
}
>
@@ -947,62 +746,45 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
+ >
+
+
+
+
+ open access
+
+
@@ -1036,51 +818,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Brown , S 2014 , ' Conceptualizing
-
-
- digital
-
-
- literacies and
-
-
- digital
-
-
- ethics for sustainability
-
-
- education
-
-
- ' International Journal of Sustainability in Higher
-
-
- Education
-
-
- , vol 15 , no. 3 , pp. 280-290 . DOI:10.1108/IJSHE-08-2012-0078
+ Applied Physics A: Materials Science and Processing
@@ -1096,12 +834,12 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- https://www.research.manchester.ac.uk/portal/en/publications/conceptualizing-digital-literacies-and-digital-ethics-for-sustainability-education(d99555d3-f49c-4ca4-87ae-ee4a1e8abcad).html
+ https://elar.urfu.ru/handle/10995/90559
@@ -1113,57 +851,23 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Purpose – The purpose of this paper is to discuss the need for integrating a focus on
-
-
- digital
-
-
- literacies and
-
-
- digital
-
-
- ethics into sustainability
-
-
- education
-
-
- , proposing a conceptualization of these for sustainability
-
-
- education
-
-
- . Design/methodology/approac...
+ Three-dimensional (3D) biopolymer-based scaffolds including chitinous matrices have been widely used for tissue engineering, regenerative medicine and other modern interdisciplinary fields including extreme biomimetics. In this study, we introduce a ...
+ >
+
+
+ PDF
+
+
- Digital citizenship, Digital education revolution, Digital literacies
+ Aplysina aerophoba, Bone cements, Cement production
@@ -1195,62 +899,34 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
@@ -1297,56 +993,13 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Abstract ; The world becomes
-
-
- Digital
-
-
- day by day and thus activities, features and sectors and different spaces are highly associated with
-
-
- Digital
-
-
- Tools, Techniques and Technologies.
-
-
- Education
-
-
- domain becomes highly technology enabled in recent past an...
+ No abstract available
-
-
- PDF
-
-
+ />
- Digital citizenship, Digital education revolution, Digital literacies
+ General Dentistry, Calcium silicate
@@ -1378,49 +1031,38 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
+ >
+
+
+
+
+ open access
+
+
+
+
+ in
+
+
+
+
+ Journal of Materials Research and Technology ; volume 9, issue 6, page 14792-14798 ; ISSN 2238-7854
+
@@ -1452,17 +1114,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- http://hdl.handle.net/1959.13/934096
+ https://dx.doi.org/10.1016/j.jmrt.2020.10.054
@@ -1474,35 +1136,23 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- The use of
-
-
- digital
-
-
- technology in the classroom is a significant issue for teachers as they are under increasing pressure to teach in technologically mediated ways. This ‘digital turn’ in
-
-
- education
-
-
- has culminated in the Australian federal government’s...
+ No abstract available
+ >
+
+
+ PDF
+
+
- Digital citizenship, Digital education revolution, Digital literacies
+ Additive manufacturing, Calcium soda, Glass Ceramics
@@ -1534,7 +1184,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
@@ -1617,13 +1245,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Australian Journal of Teacher
-
-
- Education
+ Journal of Endodontics ; volume 46, issue 4, page 515-523 ; ISSN 0099-2399
@@ -1634,17 +1256,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- https://ro.ecu.edu.au/ajte/vol37/iss4/5
+ https://dx.doi.org/10.1016/j.joen.2020.01.007
@@ -1656,40 +1278,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- In 2008 Australians were promised a ‘Digital
-
-
- Education
-
-
- Revolution’ by the government to dramatically change classroom
-
-
- education
-
-
- and build a ‘world-class
-
-
- education
-
-
- system’. Eight billion dollars have been spent providing computer equipment for upper s...
+ No abstract available
@@ -1711,9 +1300,9 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Decision support, Digital food education, Education revolution
+ General Dentistry, Calcium silicate
@@ -1727,7 +1316,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
-
- Digital
-
-
- agility and
-
-
- digital
-
-
- decision-making: conceptualising
-
-
- digital
-
- inclusion in the context of disabled learners in higher
-
-
- education
+ Construction of physically crosslinked chitosan/sodium alginate/calcium ion double-network hydrogel and its application to heavy metal ions removal
- (2010)
+ (2018)
@@ -1803,7 +1358,27 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Jane Seale, E.A. Draffan, Mike Wald
+ Shuxian Tang, Jueying Yang, Lizhi Lin, Kelin Peng, Yu Chen, Shaohua Jin, Weishang Yao
+
+
+
+
+
+ in
+
+
+
+
+ Chemical Engineering Journal ; volume 393, page 124728 ; ISSN 1385-8947
+
@@ -1813,17 +1388,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- https://eprints.soton.ac.uk/71809/
+ https://dx.doi.org/10.1016/j.cej.2020.124728
@@ -1832,27 +1407,10 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
id="list_abstract"
>
-
- Digital
-
-
- inclusion in higher
-
-
- education
-
- has tended to be understood solely in terms of accessibility, which does little to further our understanding of the role technology plays in the learning experiences of disabled students. In this article, the aut...
+ No abstract available
@@ -1874,9 +1432,9 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Higher education institutions, Digital inclusion, Higher education students
+ Environmental Chemistry, General Chemistry, General chemical engineering
@@ -1890,57 +1448,45 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
+ >
+
+
+
+
+ open access
+
+
@@ -1974,13 +1520,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Volume: 14, Issue: 3 198-224 ; 1302-6488 ; Turkish Online Journal of Distance
-
-
- Education
+ Atherosclerosis ; volume 306, page 85-95 ; ISSN 0021-9150
@@ -1991,17 +1531,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- https://dergipark.org.tr/tr/pub/tojde/issue/16897/176081
+ https://dx.doi.org/10.1016/j.atherosclerosis.2020.05.017
@@ -2013,35 +1553,23 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- The result of the
-
-
- digital
-
-
- “Tsunami” changes in
-
-
- education
-
-
- in the 21st has been huge. Recall that in the year 2000 there was no such thing as internet broadband, Facebook or iTunes which is now a daily commodity. No doubt changes in technology will con...
+ No abstract available
+ >
+
+
+ PDF
+
+
- Decision support, Digital food education, Education revolution
+ Cardiology and Cardiovascular medicine, Anesthesiology and Pain medicine, Biomedical engineering
@@ -2073,67 +1601,34 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
-
-
-
-
- open access
-
-
+ />
- Confirmatory factor analysis of the essential
-
-
- digital
-
-
- competencies for undergraduate students in thai higher
-
-
- education
-
-
- institutions
+ Mechanism of deoxynivalenol-induced neurotoxicity in weaned piglets is linked to lipid peroxidation, dampened neurotransmitter levels, and interferenc...
- (2019)
+ (2018)
@@ -2148,7 +1643,27 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Thamasan Suwanroj, Punnee Leekitchwatana, Paitoon Pimdee
+ Xichun Wang, Xiaofang Chen, Li Cao, Lei Zhu, Yafei Zhang, Xiaoyan Chu, Dianfeng Zhu...
+
+
+
+
+
+ in
+
+
+
+
+ Ecotoxicology and Environmental Safety ; volume 194, page 110382 ; ISSN 0147-6513
+
@@ -2158,17 +1673,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- http://hdl.handle.net/2117/172239
+ https://dx.doi.org/10.1016/j.ecoenv.2020.110382
@@ -2180,45 +1695,13 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- The purpose of this descriptive study was to apply 2nd order confirmatory factor analysis (CFA) and structural relationship models to identify the
-
-
- digital
-
-
- competency components essential to undergraduate students in Thai higher
-
-
- education
-
-
- institutions...
+ No abstract available
-
-
- PDF
-
-
+ />
- Higher education institutions, Digital inclusion, Higher education students
+ Health, Toxicology and Mutagenesis, Pollution, Public health, Environmental and Occupational health
@@ -2250,67 +1733,34 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
-
-
-
-
- open access
-
-
+ />
@@ -2344,18 +1794,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- The Turkish Online Journal of Distance
-
-
- Education
-
-
- , Vol 20, Iss 2, Pp 89-104 (2019)
+ Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease ; volume 1866, issue 5, page 165682 ; ISSN 0925-4439
@@ -2366,17 +1805,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- https://doi.org/10.17718/tojde.557742
+ https://dx.doi.org/10.1016/j.bbadis.2020.165682
@@ -2388,67 +1827,13 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- This study examines ongoing efforts by academic libraries to integrate
-
-
- digital
-
-
- resources into distance
-
-
- education
-
-
- courses. The study adopts a conceptual approach and it is thematically focused on the concepts of distance
-
-
- education
-
-
- and
-
-
- digital
-
-
- librarie...
+ No abstract available
-
-
- PDF
-
-
+ />
- Digital libraries, European debate, Information science education
+ Cardiology and Cardiovascular medicine, Anesthesiology and Pain medicine, Biomedical engineering
@@ -2480,73 +1865,34 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
@@ -2613,45 +1959,13 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Presentation of the monograph of Tendencias Pedagógicas devoted to "Technologies,
-
-
- Education
-
-
- and
-
-
- Digital
-
-
- Divide". ; Presentación del Monográfico de Tendencias Pedagógicas dedicado a "Tecnologías, Educación y Brecha Digital".
+ No abstract available
-
-
- PDF
-
-
+ />
- Digital age, Academic dishonesty, Brecha digital
+ Cardiology and Cardiovascular medicine, Anesthesiology and Pain medicine, Biomedical engineering
@@ -2683,62 +1997,34 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
-
-
-
-
- open access
-
-
+ />
@@ -2769,49 +2055,10 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
className="list_published_in"
>
-
- Education
-
- Reform:
-
-
- Education
-
-
- Content Research and Implementation Problems; Vol 1 (2019):
-
-
- Education
-
-
- Reform:
-
-
- Education
-
-
- Content Research and Implementation Problems; 67-78 ; 2661-5266 ; 2661-5258
+ Microporous and Mesoporous Materials ; volume 294, page 109899 ; ISSN 1387-1811
@@ -2822,17 +2069,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- http://journals.ru.lv/index.php/ER/article/view/4213
+ https://dx.doi.org/10.1016/j.micromeso.2019.109899
@@ -2844,45 +2091,13 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Media and new technologies integration into the learning process of higher educational institutions stimulates the necessity for the development of
-
-
- digital
-
-
- competence. However, the evaluation of
-
-
- digital
-
-
- competence is required before working out and o...
+ No abstract available
-
-
- PDF
-
-
+ />
- Higher education institutions, Digital inclusion, Higher education students
+ Materials Chemistry, Ceramics and composites, Mechanics of materials
@@ -2914,7 +2129,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
-
-
-
-
-
-
- This article examines how the concepts of
-
-
- digital
-
-
- literacies and
-
-
- digital
-
-
- competence are conceptualized in curricula for compulsory
-
-
- education
-
-
- within the Nordic countries. In 2006, the European Union defined
-
-
- digital
+
+
+
+
- competence as one of eight key compe...
+ No abstract available
@@ -3071,9 +2245,9 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Digital competence, Teacher education, Competencia digital
+ Cardiology and Cardiovascular medicine, Anesthesiology and Pain medicine, Biomedical engineering
@@ -3087,49 +2261,27 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
-
-
-
-
- open access
-
-
+ />
@@ -3170,7 +2322,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- The International Journal of Information and Learning Technology, Vol. 36, no.2, p. 169-18 (2019)
+ Journal of Cleaner Production ; volume 268, page 122253 ; ISSN 0959-6526
@@ -3181,17 +2333,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- http://hdl.handle.net/2078.1/215221
+ https://dx.doi.org/10.1016/j.jclepro.2020.122253
@@ -3203,67 +2355,13 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- This article proposes a theoretical contribution to the study of
-
-
- digital
-
-
- (in)equity in teaching and learning with
-
-
- digital
-
-
- technologies. We present a sociocritical approach to
-
-
- digital
-
-
- technology in
-
-
- education
-
-
- , one that can provide a theoretical backdro...
+ No abstract available
-
-
- PDF
-
-
+ />
- Digital citizenship, Digital education revolution, Digital literacies
+ Environmental Chemistry, General Chemistry, General chemical engineering
@@ -3295,7 +2393,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
+
+
+ in
+
+
+
+
+ Cell Calcium ; volume 86, page 102135 ; ISSN 0143-4160
+
@@ -3353,17 +2465,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- http://nectar.northampton.ac.uk/7284/
+ https://dx.doi.org/10.1016/j.ceca.2019.102135
@@ -3375,18 +2487,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- A reflection on a year of Northampton Inspire Network meetings exploring the relationship between physical art and
-
-
- digital
-
-
- technology with university lecturers, students, teachers and pupils.
+ No abstract available
@@ -3408,9 +2509,9 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Higher education institutions, Digital inclusion, Higher education students
+ Cell Biology, Molecular Biology, Biochemistry
@@ -3424,7 +2525,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
+
+
+ in
+
+
+
+
+ Journal of Materials Science & Technology ; volume 36, page 27-36 ; ISSN 1005-0302
+
@@ -3498,17 +2597,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- https://espace.library.uq.edu.au/view/UQ:403365
+ https://dx.doi.org/10.1016/j.jmst.2019.04.038
@@ -3520,51 +2619,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- What kind of thing will food
-
-
- education
-
-
- become in digitisedclassrooms? Drawn from a broader research project concernedwith the‘e turn’in school health and physical
-
-
- education
-
-
- , thispaper analyses three examples of
-
-
- digital
-
-
- food
-
-
- education
-
-
- (DEF).This is do...
+ No abstract available
@@ -3586,9 +2641,9 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Decision support, Digital food education, Education revolution
+ Materials Chemistry, Ceramics and composites, Mechanics of materials
@@ -3602,7 +2657,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
@@ -3696,7 +2729,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- South African Journal of Education; Vol 38, No 2 (2018); 1-9 ; 2076-3433 ; 0256-0100
+ Journal of Dental Sciences ; ISSN 1991-7902
@@ -3707,17 +2740,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- https://www.ajol.info/index.php/saje/article/view/173120
+ https://dx.doi.org/10.1016/j.jds.2020.08.016
@@ -3729,18 +2762,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Teaching English with
-
-
- digital
-
-
- technology has exacerbated the process of teaching and learning. In youth leisure, computers are more than information devices: they convey stories, images, identities, and fantasies through providing imaginative opportu...
+ No abstract available
@@ -3772,9 +2794,9 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Digital citizenship, Digital education revolution, Digital literacies
+ General Dentistry, Calcium silicate
@@ -3788,7 +2810,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
-
- in
-
-
-
-
- International Network for Engineering
-
-
- Education
-
-
- and Research (iNEER) Special Volume: Innovations 2007 - World Innovations in Engineering
-
-
- Education
-
-
- and Research, 2007, Arlington: International Network for Engineering
-
-
- Education
-
+ >
+
+ in
+
+
+
- and Research, pp. 1-9
+ International Journal of Hydrogen Energy ; volume 45, issue 18, page 10709-10723 ; ISSN 0360-3199
@@ -3893,17 +2882,17 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
[
- link
+ doi
]:
- http://digital.library.unt.edu/ark:/67531/metadc30842/
+ https://dx.doi.org/10.1016/j.ijhydene.2020.01.243
@@ -3915,7 +2904,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- This article discusses motivating and retaining computer science students with a competitive game programming project.
+ No abstract available
@@ -3937,9 +2926,9 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Information commons, Metadata education, Public education
+ Energy engineering and power technology, Fuel technology, Renewable energy, Sustainability and the environment
@@ -3953,7 +2942,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
@@ -4043,12 +3010,12 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- http://hdl.handle.net/11189/3465
+ http://hdl.handle.net/20.500.11850/393261
@@ -4060,29 +3027,7 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- The 21 Century learners are said to be
-
-
- digital
-
-
- natives. They have increased exposure to new technologies such that are more skilled than their teachers in the use of
-
-
- digital
-
-
- technologies. Coincidentally, many classrooms in big cities are also multicu...
+ Mountainous landscapes reflect the competition between denudation, uplift, and climate, which produce, modify, and destroy relief and topography. Bedrock rivers are dynamic topographic features and a critical link between these processes, as they rec...
@@ -4114,9 +3059,9 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- Digital storytelling, Citizenship education, Distance education
+ Aplysina aerophoba, Bone cements, Cement production
@@ -4130,67 +3075,34 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
@@ -4237,45 +3149,13 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- La competencia
-
-
- digital
-
-
- es considerada clave para alcanzar la ciudadanía
-
-
- digital
-
-
- . Este trabajo muestra como se trabaja dicha competencia en la formación inicial del profesorado de educación infantil. El diseño de la experiencia se apoya en dos ejes pr...
+ Introduction: Hypocalcemia has been widely recognized in sepsis patients. However, the cause of hypocalcemia in sepsis is still not clear, and little is known about the subcellular distribution of Ca2+ in tissues during sepsis. Methodology: We measur...
-
-
- PDF
-
-
+ />
- Digital competence, Teacher education, Competencia digital
+ Aplysina aerophoba, Bone cements, Cement production
@@ -4307,40 +3187,45 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
+ >
+
+
+
+
+ open access
+
+
+
+
+ in
+
+
+
+
+ Universidad Nacional de San Martín - Tarapoto ; Repositorio
+
+
+ Digital
+
+
+ UNSM - T
+
@@ -4370,12 +3286,12 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- http://hdl.handle.net/10342/1956
+ http://hdl.handle.net/11458/3789
@@ -4387,24 +3303,23 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- This article looks at sustainability in higher
-
-
- education
-
-
- and office environments, specifically proposing a green redesign of the Greenville, NC V.O.A. site.
+ En el presente trabajo de investigación, tuvo como objetivo determinar la influencia de la participación comunitaria en el mejoramiento de la calidad del agua para consumo humano en asentamiento humano San Genaro, para lo cual se analizaron los parám...
+ >
+
+
+ PDF
+
+
- Information commons, Metadata education, Public education
+ Calcio por
@@ -4436,67 +3351,34 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
>
-
-
-
-
- open access
-
-
+ />
-
-
- in
-
-
-
-
- Acta Universitatis Lodziensis. Folia Litteraria Polonica, Vol 56, Iss 1, Pp 127-141 (2020)
-
+ Ozgur Yigit, Ahmet Atas, Deniz Tuna Edizer, Zeynep Onerci Altunay, MEHMET GÜL, Zehra Cinar
@@ -4546,12 +3408,12 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- https://doi.org/10.18778/1505-9057.56.08
+ http://hdl.handle.net/20.500.12627/2022
@@ -4563,56 +3425,13 @@ exports[`List entries component snapshot (BASE) matches a snapshot (zoomed-out)
- This article is an analysis of the use of
-
-
- digital
-
-
-
-
-
- education
-
-
- in Polish philological
-
-
- education
-
-
- , both at schools and at public universities. The author presents how Polish lessons and classes are fulfilled using technology, which electronic resources ar...
+ Hypothesis: The ototoxic effects of aminoglycosides are well known. Gentamicin carries a substantial risk of hearing loss. Gentamicin is widely used to combat life-threatening infections, despite its ototoxic effects. Calcium dobesilate is a pharmaco...
-
-
- PDF
-
-
+ />
- Decision support, Digital food education, Education revolution
+ Calcium dobesilate, Calcium hydroxide, Sağlık Bilimleri
diff --git a/vis/test/snapshot/list-base.test.js b/vis/test/snapshot/list-base.test.js
index e2ea0fb5a..1f822bbda 100644
--- a/vis/test/snapshot/list-base.test.js
+++ b/vis/test/snapshot/list-base.test.js
@@ -13,13 +13,23 @@ import List from "../../js/components/List";
import reducer from "../../js/reducers";
import LocalizationProvider from "../../js/components/LocalizationProvider";
+import { getAuthorsList } from "../../js/utils/data";
const PAPER_OA_SAFE_ID =
- "008ea92dafd41bdb55abf7cb8b4f43deb52ac003a2b15a8c5eb8743ae021533d";
+ "18cabd2db11b6c2f6108b9fb11d07ce9ec55f2b3037f6cac6e1ea00710728958";
const setup = () => {
+ data.forEach((d) => (d.authors_list = getAuthorsList(d.authors, true)));
+
const store = createStore(reducer);
- store.dispatch(initializeStore(config, context, data));
+ store.dispatch(
+ initializeStore(config, context, data, [], null, 800, null, null, 800, {
+ bubbleMinScale: config.bubble_min_scale,
+ bubbleMaxScale: config.bubble_max_scale,
+ paperMinScale: config.paper_min_scale,
+ paperMaxScale: config.paper_max_scale,
+ })
+ );
return store;
};
diff --git a/vis/test/store/areas.test.js b/vis/test/store/areas.test.js
index 7cf137c45..48f652250 100644
--- a/vis/test/store/areas.test.js
+++ b/vis/test/store/areas.test.js
@@ -27,14 +27,17 @@ describe("areas state", () => {
min_area_size: 50,
max_area_size: 110,
reference_size: 650,
- bubble_min_scale: 1,
- bubble_max_scale: 1.1,
zoom_factor: 0.9,
},
{},
+ [],
RAW_DATA,
"",
- 800
+ 800,
+ null,
+ null,
+ 800,
+ { bubbleMinScale: 1, bubbleMaxScale: 1.1 }
)
);
@@ -51,14 +54,17 @@ describe("areas state", () => {
min_area_size: 50,
max_area_size: 110,
reference_size: 650,
- bubble_min_scale: 1,
- bubble_max_scale: 1.1,
zoom_factor: 0.9,
},
{},
+ [],
RAW_DATA_MULTIPLE,
"",
- 800
+ 800,
+ null,
+ null,
+ 800,
+ { bubbleMinScale: 1, bubbleMaxScale: 1.1 }
)
);
@@ -76,11 +82,7 @@ describe("areas state", () => {
it("should return the zoomed in state", () => {
const result = reducer(
INITIALIZED_STATE,
- zoomIn(
- { uri: INITIALIZED_STATE.list[0].area_uri },
- undefined,
- false
- )
+ zoomIn({ uri: INITIALIZED_STATE.list[0].area_uri }, undefined, false)
);
expect(result).toEqual(ZOOMED_STATE);
});
@@ -107,71 +109,12 @@ describe("areas state", () => {
});
});
-const RAW_DATA = [
- {
- area: "Vaccines",
- readers: 0,
- x: -339.1506919811518,
- y: 231.9285358243851,
- area_uri: 0,
- num_readers: 0,
- internal_readers: 1,
- num_subentries: 0,
- },
-];
+const RAW_DATA = [{ area: "test area", papers: [] }];
-const RAW_DATA_MULTIPLE = [
- {
- area: "Vaccines",
- readers: 0,
- x: -339.1506919811518,
- y: 231.9285358243851,
- area_uri: 0,
- num_readers: 0,
- internal_readers: 1,
- num_subentries: 0,
- },
- {
- area: "Vaccines",
- readers: 2,
- x: -393.1506919811518,
- y: 241.9285358243851,
- area_uri: 0,
- num_readers: 2,
- internal_readers: 2,
- num_subentries: 0,
- },
-];
+const RAW_DATA_MULTIPLE = [{ area: "test area" }, { area: "another area" }];
const INITIALIZED_STATE = {
- list: [
- {
- area_uri: 0,
- num_readers: 1,
- origR: 1,
- origX: -339.1506919811518,
- origY: -231.9285358243851,
- papers: [
- {
- area: "Vaccines",
- area_uri: 0,
- internal_readers: 1,
- num_readers: 0,
- num_subentries: 0,
- readers: 0,
- x: -339.1506919811518,
- y: 231.9285358243851,
- },
- ],
- r: 61.53846153846154,
- title: "Vaccines",
- x: 119.46153846153847,
- y: 119.46153846153847,
- zoomedR: 61.53846153846154,
- zoomedX: 119.46153846153847,
- zoomedY: 119.46153846153847,
- },
- ],
+ list: RAW_DATA,
size: 800,
options: {
bubbleMaxScale: 1.1,
@@ -184,44 +127,7 @@ const INITIALIZED_STATE = {
};
const INITIALIZED_STATE_MULTIPLE = {
- list: [
- {
- area_uri: 0,
- num_readers: 3,
- origR: 3,
- origX: -366.1506919811518,
- origY: -236.9285358243851,
- papers: [
- {
- area: "Vaccines",
- area_uri: 0,
- internal_readers: 1,
- num_readers: 0,
- num_subentries: 0,
- readers: 0,
- x: -339.1506919811518,
- y: 231.9285358243851,
- },
- {
- area: "Vaccines",
- readers: 2,
- x: -393.1506919811518,
- y: 241.9285358243851,
- area_uri: 0,
- num_readers: 2,
- internal_readers: 2,
- num_subentries: 0,
- },
- ],
- r: 61.53846153846154,
- title: "Vaccines",
- x: 119.46153846153847,
- y: 119.46153846153847,
- zoomedR: 61.53846153846154,
- zoomedX: 119.46153846153847,
- zoomedY: 119.46153846153847,
- },
- ],
+ list: RAW_DATA_MULTIPLE,
size: 800,
options: {
bubbleMaxScale: 1.1,
@@ -234,34 +140,7 @@ const INITIALIZED_STATE_MULTIPLE = {
};
const RESIZED_STATE = {
- list: [
- {
- area_uri: 0,
- num_readers: 1,
- origR: 1,
- origX: -339.1506919811518,
- origY: -231.9285358243851,
- papers: [
- {
- area: "Vaccines",
- area_uri: 0,
- internal_readers: 1,
- num_readers: 0,
- num_subentries: 0,
- readers: 0,
- x: -339.1506919811518,
- y: 231.9285358243851,
- },
- ],
- r: 46.15384615384615,
- title: "Vaccines",
- x: 89.59615384615385,
- y: 89.59615384615385,
- zoomedR: 46.15384615384615,
- zoomedX: 89.59615384615385,
- zoomedY: 89.59615384615385,
- },
- ],
+ list: RAW_DATA,
size: 600,
options: {
bubbleMaxScale: 1.1,
@@ -274,42 +153,7 @@ const RESIZED_STATE = {
};
const ZOOMED_STATE = {
- list: [
- {
- area_uri: 0,
- num_readers: 1,
- origR: 1,
- origX: -339.1506919811518,
- origY: -231.9285358243851,
- papers: [
- {
- area: "Vaccines",
- area_uri: 0,
- internal_readers: 1,
- num_readers: 0,
- num_subentries: 0,
- prevZoomedHeight: undefined,
- prevZoomedWidth: undefined,
- prevZoomedX: undefined,
- prevZoomedY: undefined,
- readers: 0,
- x: -339.1506919811518,
- y: 231.9285358243851,
- zoomedHeight: NaN,
- zoomedWidth: NaN,
- zoomedX: -2990.6729724176093,
- zoomedY: 1525.6119208111788,
- },
- ],
- r: 46.15384615384615,
- title: "Vaccines",
- x: 89.59615384615385,
- y: 89.59615384615385,
- zoomedR: 360,
- zoomedX: 399.99999999999994,
- zoomedY: 399.99999999999994,
- },
- ],
+ list: RAW_DATA,
size: 800,
options: {
bubbleMaxScale: 1.1,
diff --git a/vis/test/store/chart.test.js b/vis/test/store/chart.test.js
index 22cfee3f5..267331894 100644
--- a/vis/test/store/chart.test.js
+++ b/vis/test/store/chart.test.js
@@ -27,7 +27,7 @@ describe("chart state", () => {
const result = reducer(
INITIAL_STATE,
- initializeStore({}, {}, [], "", 200, 400, 200)
+ initializeStore({}, {}, [], [], "", 200, 400, 200, 200, {})
);
const EXPECTED_RESULT = {
@@ -61,7 +61,12 @@ describe("chart state", () => {
updateDimensions({ size: 300, width: 400, height: 300 }, {})
);
- const EXPECTED_RESULT = { width: 300, height: 300, streamWidth: 400, streamHeight: 300 };
+ const EXPECTED_RESULT = {
+ width: 300,
+ height: 300,
+ streamWidth: 400,
+ streamHeight: 300,
+ };
expect(result).toEqual(EXPECTED_RESULT);
});
diff --git a/vis/test/store/data.test.js b/vis/test/store/data.test.js
index 6507faab4..08d65f5e3 100644
--- a/vis/test/store/data.test.js
+++ b/vis/test/store/data.test.js
@@ -1,7 +1,6 @@
import { initializeStore, updateDimensions } from "../../js/actions";
import reducer from "../../js/reducers/data";
-import { sanitizeInputData } from "../../js/utils/data";
import localData from "../data/local-files";
@@ -144,7 +143,18 @@ describe("data state", () => {
it("should not initialize the papers if streamgraph", () => {
const result = reducer(
{ list: [], options: {}, size: null },
- initializeStore({ is_streamgraph: true }, {}, [], "", 500, 500, 500)
+ initializeStore(
+ { is_streamgraph: true },
+ {},
+ [],
+ [],
+ "",
+ 500,
+ 500,
+ 500,
+ 500,
+ {}
+ )
);
expect(result).toEqual({
@@ -166,78 +176,6 @@ describe("data state", () => {
});
});
- it("should sanitize the input data with a property missing", () => {
- const mockWarn = jest.fn();
-
- global.console = {
- log: console.log,
- warn: mockWarn,
- error: console.error,
- info: console.info,
- debug: console.debug,
- };
-
- localData.forEach((entry) => {
- expect(entry).not.toHaveProperty("area_uri");
- });
-
- const sanitizedData = sanitizeInputData(localData);
-
- expect(mockWarn).toHaveBeenCalled();
-
- sanitizedData.forEach((entry) => {
- expect(entry).toHaveProperty("area_uri");
- });
- });
-
- it("should sanitize the input data with a property missing just in some entries", () => {
- const mockWarn = jest.fn();
-
- const entry1 = Object.assign({}, localData[0]);
- entry1.area_uri = "some-uri";
- const entry2 = Object.assign({}, localData[1]);
- delete entry2.area_uri;
- const mockLocalData = [entry1, entry2];
-
- global.console = {
- log: console.log,
- warn: mockWarn,
- error: console.error,
- info: console.info,
- debug: console.debug,
- };
-
- const sanitizedData = sanitizeInputData(mockLocalData);
-
- expect(mockWarn).toHaveBeenCalled();
-
- sanitizedData.forEach((entry) => {
- expect(entry).toHaveProperty("area_uri");
- });
- });
-
- it("should warn that some properties have a bad type", () => {
- const mockWarn = jest.fn();
-
- const entry1 = Object.assign({}, localData[0]);
- entry1.area_uri = "some-uri";
- const entry2 = Object.assign({}, localData[1]);
- entry2.area_uri = true;
- const mockLocalData = [entry1, entry2];
-
- global.console = {
- log: console.log,
- warn: mockWarn,
- error: console.error,
- info: console.info,
- debug: console.debug,
- };
-
- sanitizeInputData(mockLocalData);
-
- expect(mockWarn).toHaveBeenCalled();
- });
-
it("should not change the state if the action is canceled", () => {
const INITIAL_STATE = { some_state: 1 };
diff --git a/vis/test/store/initialize.test.js b/vis/test/store/initialize.test.js
index e9160c493..9613d4573 100644
--- a/vis/test/store/initialize.test.js
+++ b/vis/test/store/initialize.test.js
@@ -139,7 +139,17 @@ describe("config and context state", () => {
const result = headingReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(EXPECTED_RESULT);
@@ -167,7 +177,17 @@ describe("config and context state", () => {
const result = headingReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(EXPECTED_RESULT);
@@ -192,7 +212,17 @@ describe("config and context state", () => {
const result = headingReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(EXPECTED_RESULT);
@@ -219,7 +249,17 @@ describe("config and context state", () => {
const result = headingReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(EXPECTED_RESULT);
@@ -245,7 +285,17 @@ describe("config and context state", () => {
const result = headingReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(EXPECTED_RESULT);
@@ -271,7 +321,17 @@ describe("config and context state", () => {
const result = headingReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(EXPECTED_RESULT);
@@ -297,7 +357,17 @@ describe("config and context state", () => {
const result = headingReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(EXPECTED_RESULT);
@@ -339,7 +409,17 @@ describe("config and context state", () => {
const result = localizationReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(EXPECTED_RESULT);
@@ -370,7 +450,17 @@ describe("config and context state", () => {
const result = queryReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result.text).toEqual(EXPECTED_RESULT);
@@ -384,7 +474,17 @@ describe("config and context state", () => {
const result = queryReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result.text).toEqual(EXPECTED_RESULT);
@@ -403,7 +503,17 @@ describe("config and context state", () => {
const result = queryReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result.parsedTerms).toEqual(EXPECTED_RESULT);
@@ -437,7 +547,17 @@ describe("config and context state", () => {
const result = filesReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(EXPECTED_RESULT);
@@ -484,7 +604,17 @@ describe("config and context state", () => {
const result = timespanReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual("11 Aug 2019 - 12 Aug 2020");
@@ -510,7 +640,17 @@ describe("config and context state", () => {
const result = timespanReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual("Until 12 Aug 2020");
@@ -536,7 +676,17 @@ describe("config and context state", () => {
const result = timespanReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual("Until 2019");
@@ -562,7 +712,17 @@ describe("config and context state", () => {
const result = timespanReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(null);
@@ -589,12 +749,20 @@ describe("config and context state", () => {
const result = timespanReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
- expect(result).toEqual(
- `2019 - ${TODAY.getFullYear()}`
- );
+ expect(result).toEqual(`2019 - ${TODAY.getFullYear()}`);
});
it("should initialize a correct timespan 'Until 2019' (triple streamgraph)", () => {
@@ -619,7 +787,17 @@ describe("config and context state", () => {
const result = timespanReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual("Until 2019");
@@ -648,7 +826,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("show", true);
@@ -667,7 +855,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("show", false);
@@ -686,51 +884,54 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("show", false);
});
it("should initialize correct articles count", () => {
- const ARTICLES_COUNT = 42;
- const initialState = {};
- const { configObject, contextObject } = setup(
- {},
- {
- num_documents: ARTICLES_COUNT,
- }
- );
-
- const result = contextLineReducer(
- initialState,
- initializeStore(configObject, contextObject)
- );
-
- expect(result).toHaveProperty("articlesCount", ARTICLES_COUNT);
- });
-
- it("should initialize null articles count", () => {
- const ARTICLES_COUNT = undefined;
-
+ const FAKE_DATA = [...Array(42).keys()].map((e) => ({
+ id: e,
+ resulttype: [],
+ }));
const initialState = {};
- const { configObject, contextObject } = setup(
- {},
- {
- num_documents: ARTICLES_COUNT,
- }
- );
+ const { configObject, contextObject } = setup({}, {});
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ FAKE_DATA,
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
- expect(result).toHaveProperty("articlesCount", ARTICLES_COUNT);
+ expect(result).toHaveProperty("articlesCount", FAKE_DATA.length);
});
it("should initialize correct modifier type", () => {
const MODIFIER = "most-recent";
+ const FAKE_DATA = [...Array(101).keys()].map((e) => ({
+ id: e,
+ resulttype: [],
+ }));
const initialState = {};
const { configObject, contextObject } = setup(
@@ -741,13 +942,22 @@ describe("config and context state", () => {
params: {
sorting: MODIFIER,
},
- num_documents: 101,
}
);
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ FAKE_DATA,
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("modifier", MODIFIER);
@@ -755,6 +965,10 @@ describe("config and context state", () => {
it("should initialize correct modifier type if number of docs is equal to max", () => {
const MODIFIER = "most-relevant";
+ const FAKE_DATA = [...Array(100).keys()].map((e) => ({
+ id: e,
+ resulttype: [],
+ }));
const initialState = {};
const { configObject, contextObject } = setup(
@@ -765,13 +979,22 @@ describe("config and context state", () => {
params: {
sorting: MODIFIER,
},
- num_documents: 100,
}
);
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ FAKE_DATA,
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("modifier", MODIFIER);
@@ -796,7 +1019,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("modifier", EXPECTED_MODIFIER);
@@ -804,25 +1037,33 @@ describe("config and context state", () => {
it("should initialize correct open access count", () => {
const SHOW_COUNT = true;
- const COUNT = 22;
- const EXPECTED_VALUE = COUNT;
+ const FAKE_DATA = [
+ { oa: true, resulttype: [] },
+ { oa: true, resulttype: [] },
+ { oa: true, resulttype: [] },
+ ];
const initialState = {};
- const { configObject, contextObject } = setup(
- {
- show_context_oa_number: SHOW_COUNT,
- },
- {
- share_oa: COUNT,
- }
- );
+ const { configObject, contextObject } = setup({
+ show_context_oa_number: SHOW_COUNT,
+ });
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ FAKE_DATA,
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
- expect(result).toHaveProperty("openAccessCount", EXPECTED_VALUE);
+ expect(result).toHaveProperty("openAccessCount", FAKE_DATA.length);
});
it("should hide open access count", () => {
@@ -842,7 +1083,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("openAccessCount", EXPECTED_VALUE);
@@ -868,7 +1119,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("showAuthor", EXPECTED_VALUE);
@@ -893,7 +1154,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("showAuthor", EXPECTED_VALUE);
@@ -918,7 +1189,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("showAuthor", EXPECTED_VALUE);
@@ -948,7 +1229,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("author", EXPECTED_VALUE);
@@ -971,7 +1262,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("author", EXPECTED_VALUE);
@@ -1010,7 +1311,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("documentTypes", [EXPECTED_VALUE]);
@@ -1060,7 +1371,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("documentTypes", EXPECTED_VALUE);
@@ -1099,7 +1420,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("documentTypes", [EXPECTED_VALUE]);
@@ -1138,7 +1469,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("documentTypes", [EXPECTED_VALUE]);
@@ -1170,7 +1511,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("documentTypes", EXPECTED_VALUE);
@@ -1197,7 +1548,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("documentTypes", EXPECTED_VALUE);
@@ -1214,7 +1575,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("dataSource", EXPECTED_VALUE);
@@ -1241,91 +1612,127 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("dataSource", EXPECTED_VALUE);
});
it("should initialize correct papers count", () => {
- const COUNT = 420;
+ const FAKE_DATA = [
+ { resulttype: ["publication"] },
+ { resulttype: ["publication"] },
+ ];
const initialState = {};
- const { configObject, contextObject } = setup(
- {
- create_title_from_context_style: "viper",
- },
- {
- num_papers: COUNT,
- }
- );
+ const { configObject, contextObject } = setup({
+ create_title_from_context_style: "viper",
+ });
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ FAKE_DATA,
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
- expect(result).toHaveProperty("paperCount", COUNT);
+ expect(result).toHaveProperty("paperCount", FAKE_DATA.length);
});
- it("should initialize null articles count", () => {
- const COUNT = 420;
+ it("should initialize null papers count", () => {
+ const FAKE_DATA = [...Array(42).keys()];
const EXPECTED_VALUE = null;
const initialState = {};
- const { configObject, contextObject } = setup(
- {
- create_title_from_context_style: "linkedcat",
- },
- {
- num_papers: COUNT,
- }
- );
+ const { configObject, contextObject } = setup({
+ create_title_from_context_style: "linkedcat",
+ });
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ FAKE_DATA,
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("paperCount", EXPECTED_VALUE);
});
it("should initialize correct datasets count", () => {
- const COUNT = 420;
+ const FAKE_DATA = [
+ { resulttype: ["dataset"] },
+ { resulttype: ["dataset"] },
+ ];
const initialState = {};
- const { configObject, contextObject } = setup(
- {
- create_title_from_context_style: "viper",
- },
- {
- num_datasets: COUNT,
- }
- );
+ const { configObject, contextObject } = setup({
+ create_title_from_context_style: "viper",
+ });
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ FAKE_DATA,
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
- expect(result).toHaveProperty("datasetCount", COUNT);
+ expect(result).toHaveProperty("datasetCount", FAKE_DATA.length);
});
- it("should initialize null articles count", () => {
- const COUNT = 420;
+ it("should initialize null dataset count", () => {
+ const FAKE_DATA = [...Array(42).keys()];
const EXPECTED_VALUE = null;
const initialState = {};
- const { configObject, contextObject } = setup(
- {
- create_title_from_context_style: "linkedcat",
- },
- {
- num_datasets: COUNT,
- }
- );
+ const { configObject, contextObject } = setup({
+ create_title_from_context_style: "linkedcat",
+ });
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ FAKE_DATA,
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("datasetCount", EXPECTED_VALUE);
@@ -1350,7 +1757,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("projectRuntime", "2009–2012");
@@ -1375,7 +1792,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("projectRuntime", null);
@@ -1400,7 +1827,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("projectRuntime", null);
@@ -1432,7 +1869,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty(
@@ -1467,7 +1914,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("legacySearchLanguage", null);
@@ -1488,7 +1945,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("timestamp", LAST_UPDATED);
@@ -1512,7 +1979,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("metadataQuality", EXPECTED_QUALITY);
@@ -1536,7 +2013,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("metadataQuality", EXPECTED_QUALITY);
@@ -1560,7 +2047,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("metadataQuality", EXPECTED_QUALITY);
@@ -1584,7 +2081,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("metadataQuality", EXPECTED_QUALITY);
@@ -1608,7 +2115,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("metadataQuality", EXPECTED_QUALITY);
@@ -1632,7 +2149,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("metadataQuality", EXPECTED_QUALITY);
@@ -1661,7 +2188,17 @@ describe("config and context state", () => {
const result = contextLineReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("searchLanguage", LANG_ID);
@@ -1691,7 +2228,17 @@ describe("config and context state", () => {
const result = serviceReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(EXPECTED_SERVICE);
@@ -1710,7 +2257,17 @@ describe("config and context state", () => {
const result = serviceReducer(
initialState,
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toEqual(SERVICE);
@@ -1737,7 +2294,17 @@ describe("config and context state", () => {
const result = listReducer(
{},
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("show", SHOW_LIST);
@@ -1752,7 +2319,17 @@ describe("config and context state", () => {
const result = listReducer(
{},
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("showFilter", SHOW_FILTER);
@@ -1767,7 +2344,17 @@ describe("config and context state", () => {
const result = listReducer(
{},
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("filterOptions", FILTER_OPTIONS);
@@ -1783,7 +2370,17 @@ describe("config and context state", () => {
const result = listReducer(
{},
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("showDropdownSort", SHOW_SORT);
@@ -1798,7 +2395,17 @@ describe("config and context state", () => {
const result = listReducer(
{},
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("sortOptions", SORT_OPTIONS);
@@ -1816,83 +2423,22 @@ describe("config and context state", () => {
const result = listReducer(
{},
- initializeStore(configObject, contextObject)
+ initializeStore(
+ configObject,
+ contextObject,
+ [],
+ null,
+ 500,
+ null,
+ null,
+ 500,
+ {}
+ )
);
expect(result).toHaveProperty("sortValue", INITIAL_SORT);
});
- it("should initialize covis link type", () => {
- const SERVICE = "gsheets";
- const EXPECTED_LINK_TYPE = "covis";
- const { configObject, contextObject } = setup(
- {},
- {
- service: SERVICE,
- }
- );
-
- const result = listReducer(
- {},
- initializeStore(configObject, contextObject)
- );
-
- expect(result).toHaveProperty("linkType", EXPECTED_LINK_TYPE);
- });
-
- it("should initialize doi link type", () => {
- const DOI_OUTLINK = true;
- const EXPECTED_LINK_TYPE = "doi";
- const { configObject, contextObject } = setup({
- doi_outlink: DOI_OUTLINK,
- });
-
- const result = listReducer(
- {},
- initializeStore(configObject, contextObject)
- );
-
- expect(result).toHaveProperty("linkType", EXPECTED_LINK_TYPE);
- });
-
- it("should initialize doi link type", () => {
- const URL_OUTLINK = true;
- const EXPECTED_LINK_TYPE = "url";
- const { configObject, contextObject } = setup({
- url_outlink: URL_OUTLINK,
- });
-
- const result = listReducer(
- {},
- initializeStore(configObject, contextObject)
- );
-
- expect(result).toHaveProperty("linkType", EXPECTED_LINK_TYPE);
- });
-
- it("should initialize null link type", () => {
- const SERVICE = "base";
- const DOI_OUTLINK = false;
- const URL_OUTLINK = false;
- const EXPECTED_LINK_TYPE = null;
- const { configObject, contextObject } = setup(
- {
- doi_outlink: DOI_OUTLINK,
- url_outlink: URL_OUTLINK,
- },
- {
- service: SERVICE,
- }
- );
-
- const result = listReducer(
- {},
- initializeStore(configObject, contextObject)
- );
-
- expect(result).toHaveProperty("linkType", EXPECTED_LINK_TYPE);
- });
-
it("should not change the state if the action is canceled", () => {
const INITIAL_STATE = { some_state: 1 };
diff --git a/vis/test/store/list.test.js b/vis/test/store/list.test.js
index 6b0bc8849..dafedda8a 100644
--- a/vis/test/store/list.test.js
+++ b/vis/test/store/list.test.js
@@ -82,7 +82,6 @@ describe("list state", () => {
sortOptions: [],
defaultSort: null,
abstractSize: 250,
- linkType: null,
showDocumentType: false,
showMetrics: false,
isContentBased: false,
diff --git a/vis/test/utils/data.test.js b/vis/test/utils/data.test.js
new file mode 100644
index 000000000..3c9ed90ff
--- /dev/null
+++ b/vis/test/utils/data.test.js
@@ -0,0 +1,221 @@
+import {
+ commentArrayValidator,
+ commentsSanitizer,
+ dateValidator,
+ getInternalMetric,
+ getVisibleMetric,
+ oaStateValidator,
+ resultTypeSanitizer,
+ stringArrayValidator,
+} from "../../js/utils/data";
+
+describe("Data utility functions", () => {
+ describe("date validator", () => {
+ it("returns true for a valid input (yyyy)", () => {
+ const data = "2021";
+
+ const result = dateValidator(data);
+
+ expect(result).toEqual(true);
+ });
+
+ it("returns true for a valid input (yyyy-mm)", () => {
+ const data = "2021-12";
+
+ const result = dateValidator(data);
+
+ expect(result).toEqual(true);
+ });
+
+ it("returns true for a valid input (yyyy-mm-dd)", () => {
+ const data = "2021-12-07";
+
+ const result = dateValidator(data);
+
+ expect(result).toEqual(true);
+ });
+
+ it("returns true for a valid input (iso 8601)", () => {
+ const data = "2021-12-07T14:57:53Z";
+
+ const result = dateValidator(data);
+
+ expect(result).toEqual(true);
+ });
+
+ it("returns false for an invalid input", () => {
+ const data = "today";
+
+ const result = dateValidator(data);
+
+ expect(result).toEqual(false);
+ });
+ });
+
+ describe("oa_state validator", () => {
+ it("returns true for a valid input", () => {
+ const data = "1";
+
+ const result = oaStateValidator(data);
+
+ expect(result).toEqual(true);
+ });
+
+ it("returns false for an invalid input", () => {
+ const data = "4";
+
+ const result = oaStateValidator(data);
+
+ expect(result).toEqual(false);
+ });
+ });
+
+ describe("string array validator", () => {
+ it("returns true for a valid input", () => {
+ const data = ["1", "2", "3"];
+
+ const result = stringArrayValidator(data);
+
+ expect(result).toEqual(true);
+ });
+
+ it("returns false for an invalid element", () => {
+ const data = ["1", 2, "3"];
+
+ const result = stringArrayValidator(data);
+
+ expect(result).toEqual(false);
+ });
+
+ it("returns false for an invalid input type", () => {
+ const data = NaN;
+
+ const result = stringArrayValidator(data);
+
+ expect(result).toEqual(false);
+ });
+ });
+
+ describe("resulttype sanitizer", () => {
+ it("successfully sanitizes a string", () => {
+ const data = "test";
+
+ const result = resultTypeSanitizer(data);
+
+ expect(result).toEqual([data]);
+ });
+
+ it("doesn't sanitize a number", () => {
+ const data = 1;
+
+ const result = resultTypeSanitizer(data);
+
+ expect(result).toEqual(undefined);
+ });
+ });
+
+ describe("comment validator", () => {
+ it("returns true for a valid input", () => {
+ const data = [
+ { comment: "test" },
+ { comment: "another test", author: "John Doe" },
+ ];
+
+ const result = commentArrayValidator(data);
+
+ expect(result).toEqual(true);
+ });
+
+ it("returns false for an invalid input", () => {
+ const data = null;
+
+ const result = commentArrayValidator(data);
+
+ expect(result).toEqual(false);
+ });
+
+ it("returns false for an invalid element (missing comment)", () => {
+ const data = [{ comment: "test" }, { author: "John Doe" }];
+
+ const result = commentArrayValidator(data);
+
+ expect(result).toEqual(false);
+ });
+
+ it("returns false for an invalid element (wrong comment type)", () => {
+ const data = [{ comment: "test" }, { comment: 1, author: "John Doe" }];
+
+ const result = commentArrayValidator(data);
+
+ expect(result).toEqual(false);
+ });
+
+ it("returns false for an invalid element (wrong author type)", () => {
+ const data = [{ comment: "test" }, { comment: "test 2", author: 8 }];
+
+ const result = commentArrayValidator(data);
+
+ expect(result).toEqual(false);
+ });
+ });
+
+ describe("comment sanitizer", () => {
+ it("doesn't sanitize non-array input", () => {
+ const data = "something";
+
+ const result = commentsSanitizer(data);
+
+ expect(result).toEqual(undefined);
+ });
+
+ it("sanitizes array input", () => {
+ const data = [{ comment: "good comment" }, { cement: "wrong comment" }];
+
+ const result = commentsSanitizer(data);
+
+ expect(result).toHaveLength(1);
+ });
+ });
+
+ describe("metric getters", () => {
+ it("returns a visible metric from the data (defined value)", () => {
+ const data = { testMetric: 42 };
+
+ const result = getVisibleMetric(data, "testMetric");
+
+ expect(result).toEqual(data.testMetric);
+ });
+
+ it("returns a visible metric from the data (n/a)", () => {
+ const data = { testMetric: "N/A" };
+
+ const result = getVisibleMetric(data, "testMetric");
+
+ expect(result).toEqual("n/a");
+ });
+
+ it("returns an internal metric from the data (defined value)", () => {
+ const data = { testMetric: 42 };
+
+ const result = getInternalMetric(data, "testMetric");
+
+ expect(result).toEqual(data.testMetric);
+ });
+
+ it("returns an internal metric from the data (undefined)", () => {
+ const data = { testMetric: "N/A" };
+
+ const result = getInternalMetric(data, "someOtherMetric");
+
+ expect(result).toEqual(0);
+ });
+
+ it("returns an internal metric from the data (n/a)", () => {
+ const data = { testMetric: "N/A" };
+
+ const result = getInternalMetric(data, "testMetric");
+
+ expect(result).toEqual(0);
+ });
+ });
+});
diff --git a/vis/test/utils/papersanitizer.test.js b/vis/test/utils/papersanitizer.test.js
new file mode 100644
index 000000000..4cd71b492
--- /dev/null
+++ b/vis/test/utils/papersanitizer.test.js
@@ -0,0 +1,245 @@
+import PaperSanitizer from "../../js/utils/PaperSanitizer";
+
+const CONFIG = {
+ scale_types: [],
+ language: "en",
+ localization: {
+ en: {
+ default_readers: 0,
+ },
+ },
+};
+
+describe("PaperSanitizer class tests", () => {
+ let mockWarn = null;
+ beforeEach(() => {
+ mockWarn = jest.fn();
+ global.console = { ...global.console, warn: mockWarn };
+ });
+
+ afterEach(() => {
+ mockWarn = null;
+
+ global.console = { ...global.console, warn: console.warn };
+ });
+
+ it("doesn't delete a property with a correct type", () => {
+ const ps = new PaperSanitizer(CONFIG);
+ const papers = [{ testProp: "correct" }, { testProp: 0 }];
+ const scheme = [{ name: "testProp", type: ["string"] }];
+
+ const result = ps.sanitizeProps(papers, scheme);
+
+ expect(result[0]).toHaveProperty("testProp");
+ });
+
+ it("deletes a property with a wrong type", () => {
+ const ps = new PaperSanitizer(CONFIG);
+ const papers = [{ testProp: "correct" }, { testProp: 0 }];
+ const scheme = [{ name: "testProp", type: ["string"] }];
+
+ const result = ps.sanitizeProps(papers, scheme);
+
+ expect(result[1]).not.toHaveProperty("testProp");
+ });
+
+ it("doesn't delete a property with a correct format", () => {
+ const ps = new PaperSanitizer(CONFIG);
+ const papers = [{ testProp: "2021-12-07" }, { testProp: "7.12.2021" }];
+ const scheme = [
+ {
+ name: "testProp",
+ type: ["string"],
+ validator: (val) => val.match(/^\d{4}-\d{2}-\d{2}$/),
+ },
+ ];
+
+ const result = ps.sanitizeProps(papers, scheme);
+
+ expect(result[0]).toHaveProperty("testProp");
+ });
+
+ it("deletes a property with a wrong format", () => {
+ const ps = new PaperSanitizer(CONFIG);
+ const papers = [{ testProp: "2021-12-07" }, { testProp: "7.12.2021" }];
+ const scheme = [
+ {
+ name: "testProp",
+ type: ["string"],
+ validator: (val) => val.match(/^\d{4}-\d{2}-\d{2}$/),
+ },
+ ];
+
+ const result = ps.sanitizeProps(papers, scheme);
+
+ expect(result[1]).not.toHaveProperty("testProp");
+ });
+
+ it("sanitizes a property with a wrong type", () => {
+ const ps = new PaperSanitizer(CONFIG);
+ const papers = [{ testProp: 0 }, { testProp: "1" }];
+ const scheme = [
+ { name: "testProp", type: ["number"], sanitizer: (val) => parseInt(val) },
+ ];
+
+ const result = ps.sanitizeProps(papers, scheme);
+
+ expect(result[1]).toHaveProperty("testProp", 1);
+ });
+
+ it("doesn't add a fallback to an initialized property", () => {
+ const ps = new PaperSanitizer(CONFIG);
+ const papers = [
+ { testProp: "val", otherProp: "sth" },
+ { otherProp: "sth" },
+ ];
+ const scheme = [{ name: "testProp", fallback: () => "test fallback" }];
+
+ const result = ps.sanitizeProps(papers, scheme);
+
+ expect(result[0]).toHaveProperty("testProp", "val");
+ });
+
+ it("adds a fallback to a missing property", () => {
+ const ps = new PaperSanitizer(CONFIG);
+ const papers = [
+ { testProp: "val", otherProp: "sth" },
+ { otherProp: "sth" },
+ ];
+ const scheme = [{ name: "testProp", fallback: () => "test fallback" }];
+
+ const result = ps.sanitizeProps(papers, scheme);
+
+ expect(result[1]).toHaveProperty("testProp", "test fallback");
+ });
+
+ it("doesn't add a fallback to defined scale types", () => {
+ const ps = new PaperSanitizer({ ...CONFIG, scale_types: ["readers"] });
+ const papers = [{ readers: 10, otherProp: "sth" }, { otherProp: "sth" }];
+ const scheme = [];
+
+ const result = ps.sanitizeProps(papers, scheme);
+
+ expect(result[0]).toHaveProperty("readers", 10);
+ });
+
+ it("adds a fallback to undefined scale types", () => {
+ const ps = new PaperSanitizer({ ...CONFIG, scale_types: ["readers"] });
+ const papers = [{ readers: 10, otherProp: "sth" }, { otherProp: "sth" }];
+ const scheme = [];
+
+ const result = ps.sanitizeProps(papers, scheme);
+
+ expect(result[1]).toHaveProperty(
+ "readers",
+ CONFIG.localization.en.default_readers
+ );
+ });
+
+ it("doesn't raise a warning if no props are missing", () => {
+ const ps = new PaperSanitizer(CONFIG);
+
+ ps.checkRequiredProps(
+ [
+ { requiredProp: "sample text" },
+ { requiredProp: "sample text", nonrequiredProp: 42 },
+ ],
+ [
+ {
+ name: "requiredProp",
+ required: true,
+ },
+ {
+ name: "nonrequiredProp",
+ },
+ ]
+ );
+
+ expect(mockWarn).not.toHaveBeenCalled();
+ });
+
+ it("raises a warning if a prop is missing", () => {
+ const ps = new PaperSanitizer(CONFIG);
+
+ ps.checkRequiredProps(
+ [
+ { nonrequiredProp: 9 },
+ { requiredProp: "sample text", nonrequiredProp: 42 },
+ ],
+ [
+ {
+ name: "requiredProp",
+ required: true,
+ },
+ {
+ name: "nonrequiredProp",
+ },
+ ]
+ );
+
+ expect(mockWarn).toHaveBeenCalledTimes(1);
+ });
+
+ it("raises a warning if a prop is missing in all papers", () => {
+ const ps = new PaperSanitizer(CONFIG);
+
+ ps.checkRequiredProps(
+ [{ nonrequiredProp: 9 }, { nonrequiredProp: 42 }],
+ [
+ {
+ name: "requiredProp",
+ required: true,
+ },
+ {
+ name: "nonrequiredProp",
+ },
+ ]
+ );
+
+ expect(mockWarn).toHaveBeenCalledTimes(1);
+ });
+
+ it("doesn't raise a warning if no unique props have duplicate values", () => {
+ const ps = new PaperSanitizer(CONFIG);
+
+ ps.checkUniqueProps(
+ [
+ { uniqueProp: 1, nonuniqueProp: 1 },
+ { uniqueProp: 2, nonuniqueProp: 1 },
+ ],
+ [
+ {
+ name: "uniqueProp",
+ unique: true,
+ },
+ {
+ name: "nonuniqueProp",
+ },
+ ]
+ );
+
+ expect(mockWarn).not.toHaveBeenCalled();
+ });
+
+ it("raises a warning if an unique prop has duplicate values", () => {
+ const ps = new PaperSanitizer(CONFIG);
+
+ ps.checkUniqueProps(
+ [
+ { uniqueProp: 1, nonuniqueProp: 1 },
+ { uniqueProp: 1, nonuniqueProp: 2 },
+ ],
+ [
+ {
+ name: "uniqueProp",
+ unique: true,
+ },
+ {
+ name: "nonuniqueProp",
+ },
+ ]
+ );
+
+ expect(mockWarn).toHaveBeenCalledTimes(1);
+ });
+});