Workflow Collection

Lars Nilse edited this page Oct 28, 2017 · 80 revisions
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The workflows require the current developer version of OpenMS.

For downloading the workflows, please follow the links and press [Download ZIP].

Misc

  • generates shuffled target-decoy database, 26/09/2015

    Workflow for the generation of target-decoy databases. Protein sequences from the input target fasta database are shuffled and appended as decoys. These decoys sequences are denoted by a prefix dec_. Databases of this form are being used in all of the workflows below.

  • Quality Control workflow, 4/11/2015

    Workflow for the generation of a qcML report. Required inputs are mzML as well as idXML and featureXML from a previous OpenMS analysis.

Sciex, TripleTOF 6600

  • label free quantification, Sciex TripleTOF 6600 (centroid mode), 11/01/2017 toppas knwf

    Workflow for the analysis of label free data.

  • peptide feature detection, Sciex TripleTOF 6600 (centroid mode), 9/01/2017 toppas knwf

    Workflow for the detection of individual peptide features in centroided spectra. It can be used as a component in a complete label-free workflow.

  • peptide feature detection, Sciex TripleTOF 6600 (profile mode), 7/01/2017 toppas knwf

    Workflow for the detection of individual peptide features in profile spectra. It can be used as a component in a complete label-free workflow.

  • SILAC Lys8 Arg10 labelled peptide quantification, Sciex TripleTOF 6600 (profile mode), 7/01/2017 toppas knwf

    Workflow for the detection of peptide feature pairs in SILAC data. It can be used as a component in a complete SILAC workflow.

Thermo, LTQ Orbitrap XL

Thermo, Orbitrap Velos

Thermo, Q Exactive


Legacy workflows from the old website (openms.de)