diff --git a/.github/workflows/check_python_package.yaml b/.github/workflows/check_python_package.yaml new file mode 100644 index 0000000..5bd82ab --- /dev/null +++ b/.github/workflows/check_python_package.yaml @@ -0,0 +1,33 @@ +name: Check + +on: + push: + pull_request: + branches: ["main"] + +jobs: + test: + strategy: + fail-fast: false + matrix: + runs-on: [ubuntu-latest, macos-latest, windows-latest] + python-version: ["3.10", "3.11", "3.12", "3.13"] + runs-on: ${{matrix.runs-on}} + steps: + - uses: actions/checkout@v6 + with: + fetch-depth: 0 + + - name: Install uv + uses: astral-sh/setup-uv@v7 + with: + python-version: ${{ matrix.python-version }} + + - name: Install the project + run: uv sync --all-extras --dev + + - name: Lint with ruff + run: uv run ruff check --output-format=github . + + - name: Run tests + run: uv run pytest --cov=opltools --cov-report=term-missing diff --git a/SCHEMA.md b/SCHEMA.md new file mode 100644 index 0000000..ae9c18b --- /dev/null +++ b/SCHEMA.md @@ -0,0 +1,305 @@ +# OPL Schema + +The OPL schema catalogs optimization **problems**, **suites**, **generators**, and their **implementations** in a single, machine-readable format. + +Three design choices shape everything below: + +1. **One flat library, keyed by ID.** + Every entity lives in a `Library` dict. + Suites reference problems, problems reference implementations using their respective ID. + There is no embedding of problems or implementations within suites to facilitate reuse. + F.e. an implementation might be referenced by multiple problems or suites. +2. **Numeric fields accept a scalar, a set, or a range.** + A problem may have exactly `2` objectives, one of `{2, 3, 5}`, or any value in `{min: 2, max: 50}`. + The same union type is used for variable dimensions and constraint counts. +3. **Three-valued logic for yes/no fields.** + Many boolean fields (f.e. `hard`, `allows_partial_evaluation`, ...) [`YesNoSome`](#yesnosome) as their value. + We lose some expressive power but simplify the data entry. + If we force authors to decide on yes or no, then we would need more complex structures for variables, constraints etc. and that would make the usual case unnecessarily complex. + +## Contents + +- [Library](#library) +- [Thing types](#thing-types) + - [Implementation](#implementation) + - [ProblemLike](#problemlike) (shared fields) + - [Problem](#problem) + - [Suite](#suite) + - [Generator](#generator) +- [Shared building blocks](#shared-building-blocks) + - [Variable](#variable) / [VariableType](#variabletype) + - [Constraint](#constraint) / [ConstraintType](#constrainttype) + - [Reference](#reference) / [Link](#link) + - [ValueRange](#valuerange) + - [YesNoSome](#yesnosome) + +--- + +## Library + +A `Library` is a dict from ID to a [Thing](#thing-types). +IDs are free-form but must be unique and the convention is to add a prefix marking the type to avoid collisions: + +| Prefix | Type | +|---------|------------------| +| `impl_` | Implementation | +| `fn_` | Problem | +| `suite_`| Suite | +| `gen_` | Generator | + +On load the library validates that every ID referenced by a suite (`problems`) or problem (`implementations`) exists and has the correct type. Suites also have their `fidelity_levels` auto-populated from their problems. + +```yaml +impl_coco: + type: implementation + name: COCO + description: Comparing Continuous Optimisers +fn_sphere: + type: problem + name: Sphere + objectives: [1] + implementations: [impl_coco] +suite_bbob: + type: suite + name: BBOB + problems: [fn_sphere] +``` + +--- + +## Thing types + +All entities inherit from `Thing`, which only carries a discriminator: + +```yaml +type: problem # or: suite | generator | implementation +``` + +We want to have as flat a structure as possible to make exploring and searching OPL as easy as possible. +That's one of the reasonst the top level object is a dictionary of dissimilar things. +But we need to be able to tell them apart so we have a `type` field to discriminate between them. + +### Implementation + +A pointer to code that implements one or more problems. +Intentionally minimal so that the schema describes *what* a problem is, not how to run it. +There are separate files which contain curated usage examples for problems or suites keyed by their respective IDs. + +| Field | Type | Notes | +|-------------------|-----------------------------------|----------------------------------------------| +| `name` | str | required | +| `description` | str | required | +| `language` | str? (e.g. `python`, `c`) | | +| `links` | list of [Link](#link)? | repo, release, docs… | +| `evaluation_time` | set of str? | free-form list ("8 minutes", "fast") | +| `requirements` | str or list of str? | URL to requirements file or list of packages | + +```yaml +impl_coco: + type: implementation + name: COCO + description: Comparing Continuous Optimisers benchmarking platform + language: c + links: + - {type: repository, url: https://github.com/numbbo/coco-experiment} +impl_py_cocoex: + type: implementation + name: Python bindings for COCO + description: The Python bindings for the experimental part of the COCO framework + language: Python + links: + - {type: source, url: https://github.com/numbbo/coco-experiment/tree/main/build/python} + - {type: package, url: https://pypi.org/project/coco-experiment/} +``` + +### ProblemLike + +Fields shared by [Problem](#problem), [Suite](#suite), and [Generator](#generator). +The schema deliberately puts most descriptive fields here so suites can be characterised without explicitly having to add all problems in the suite. + +| Field | Type | Notes | +|------------------------------------------|------------------------------------------------|----------------------------------------------------| +| `name` | str | required | +| `long_name` | str? | | +| `description` | str? (markdown) | longer prose | +| `tags` | set of str? | free-form keywords | +| `references` | set of [Reference](#reference)? | | +| `implementations` | set of IDs? | must resolve to [Implementation](#implementation)s | +| `objectives` | set of int? | e.g. `{1}`, `{2, 3}` — **not** a ValueRange | +| `variables` | set of [Variable](#variable)? | | +| `constraints` | set of [Constraint](#constraint)? | omit entirely for unconstrained | +| `dynamic_type` | set of str? | `{"no"}`, `{"time-varying"}`… | +| `noise_type` | set of str? | `{"none"}`, `{"gaussian"}`… | +| `allows_partial_evaluation` | [YesNoSome](#yesnosome)? | | +| `can_evaluate_objectives_independently` | [YesNoSome](#yesnosome)? | | +| `modality` | set of str? | `{"unimodal"}`, `{"multimodal"}` | +| `fidelity_levels` | set of int? | `{1}` = single-fidelity, `{1,2}` = multi-fidelity | +| `code_examples` | set of str? | paths to example scripts | +| `evaluation_time` | set of str? | free-form list ("8 minutes", "fast") | +| `source` | set of str? | `{"artificial"}`, `{"real-world"}` | + +> `objectives` is a set of integers because we don't assume extreme scalability in this property so explicit enumeration is fine. +> Dimensions of variables on the other hand are ranges because here problems often are scalable over wide ranges. + +When no `evaluation_time` is set, it percolates up from any referenced implementations. +The same is true for the `variables` and `constraints` properties of a suite that has references to problems. + +### Problem + +One optimization problem (possibly parameterised by instances). + +Adds: + +| Field | Type | Notes | +|-------------|--------------------------------------------|--------------------------------------------| +| `instances` | [ValueRange](#valuerange) or list of str? | e.g. `{min: 1, max: 15}` or named variants | + +```yaml +fn_sphere: + type: problem + name: Sphere + objectives: [1] + variables: [{type: continuous, dim: {min: 2, max: 40}}] + modality: [unimodal] + source: [artificial] + instances: {min: 1, max: 15} + implementations: [impl_coco] +``` + +### Suite + +A curated, fixed collection of problems. + +Adds: + +| Field | Type | Notes | +|------------|--------------|-----------------------------------------------| +| `problems` | set of IDs? | must resolve to [Problem](#problem)s | + +`fidelity_levels` is auto-unioned from member problems at validation time. + +```yaml +suite_bbob: + type: suite + name: BBOB + problems: [fn_sphere, fn_rosenbrock, fn_rastrigin] + objectives: [1] + source: [artificial] + implementations: [impl_coco] +``` + +### Generator + +A parametric family of problems — unlike a [Suite](#suite), the member problems are not enumerated. Uses the same fields as [ProblemLike](#problemlike) with no additions; the distinction from [Problem](#problem) is that a generator produces instances on demand. + +```yaml +gen_mpm2: + type: generator + name: MPM2 + description: Multiple peaks model, second instantiation + objectives: [1] + variables: [{type: continuous, dim: {min: 1}}] + modality: [multimodal] +``` + +--- + +## Shared building blocks + +### Variable + +A group of decision variables of the same type. +Multi-type problems list multiple entries. +While you can have multiple entries of the same type, this should be justified in some way like when you can evaluate the problem on only one subset of variables. + +| Field | Type | Default | +|--------|-----------------------------------------------|----------------------| +| `type` | [VariableType](#variabletype) | `unknown` | +| `dim` | int, set of int, [ValueRange](#valuerange), or null | `0` | + +```yaml +variables: + - {type: continuous, dim: 10} + - {type: integer, dim: {min: 1, max: 5}} +``` + +### VariableType + +`continuous | integer | binary | categorical | unknown`. +Use `unknown` for permutation/combinatorial problems the schema doesn't yet distinguish **and** add an appropriate tag. +We are actively watching for unknown variable types and are open to extending the above list if there is a critical mass of problems to justify it. + +### Constraint + +A group of constraints. +To indicate that the problem is unconstrained, you need an _empty_ `constraints` field. +A missing `constraints` field or if it is set to `null` means it is not known if unconstrained. + +| Field | Type | Notes | +|------------|-----------------------------------------------|------------------------------------| +| `type` | [ConstraintType](#constrainttype) | default `unknown` | +| `hard` | [YesNoSome](#yesnosome)? | hard vs. soft | +| `equality` | [YesNoSome](#yesnosome)? | equality vs. inequality | +| `number` | int, set of int, [ValueRange](#valuerange), null | | + +```yaml +constraints: + - {type: box, hard: yes, number: 10} + - {type: linear, hard: some, equality: no, number: {min: 1}} +``` + +### ConstraintType + +`box | linear | function | unknown`. `function` covers non-linear/black-box constraints. + +### Reference + +Bibliographic pointer. +Requires either a `title` or a `link` and optionally a list of `authors`. + +```yaml +references: + - title: "Honey Badger Algorithm: New metaheuristic algorithm for solving optimization problems." + authors: + - Fatma A. Hashim + - Essam H. Houssein + - Kashif Hussain + - Mai S. Mabrouk + - Walid Al-Atabany + link: {type: doi, url: "https://doi.org/10.1016/j.matcom.2021.08.013"] +``` + +### Link + +`{type?: str, url: str}`. +`type` is free-form (`repository`, `arxiv`, `paper`, `doi`, ...). +`url` is a URL to some resource. + +If `type` is `doi`, please use the full URL (starting with `https://doi.org/...`) instead of the raw DOI. + +### ValueRange + +An inclusive numeric range type. +At least one of `min`/`max` must be given. +If `min` is given and `max` is missing, it does not imply that there is no upper bound. +There might be one, it is just not known. +The same applies for the case where `max` is given and `min` is missing. + +```yaml +dim: {min: 2} # 2 or more +dim: {min: 2, max: 40} # between 2 and 40 +dim: {max: 100} # up to 100 +``` + +Used by `Variable.dim`, `Constraint.number`, `Problem.instances`. + +### YesNoSome + +Three-valued flag: `yes | no | some | ?` (the last serialises as the literal `'?'` string, meaning unknown). +`some` captures the common case where *part* of something has some property. +For example only some constraints might hard but we don't know the exact number of hard and soft constraints, only the total number. + +```yaml +constraints: [{type: box, hard: some}] +allows_partial_evaluation: "?" +``` diff --git a/examples/cobi.py b/examples/cobi.py new file mode 100644 index 0000000..2e534e4 --- /dev/null +++ b/examples/cobi.py @@ -0,0 +1,62 @@ +from opltools import Implementation, Generator, Reference, Library, Variable, Constraint +from pydantic_yaml import to_yaml_str + +things = {} + +things["cobi_impl"] = Implementation( + name="COBI Implementation", + description="Python library for COBI (COnstrained BI-objective optimization) problem generator", + language="python", + links=[ + { + "type": "repository", + "url": "https://github.com/numbbo/cobi-problem-generator/", + }, + { + "type": "v0.5.0", + "url": "https://github.com/numbbo/cobi-problem-generator/releases/tag/v0.5.0", + }, + ], + requirements="https://github.com/numbbo/cobi-problem-generator/blob/main/requirements.txt", +) + +things["cobi_problem"] = Generator( + name="COBI Problem", + description="Generator of COnstrained BI-objective optimization problems", + tags={ + "constrained", + "bi-objective", + "continuous", + "black-box", + "location", + "multi-peak", + "convex-quadratic", + }, + references=[ + Reference( + title="Pareto Set Characterization in Constrained Multiobjective Optimization and the COBI Problem Generator", + authors=["Anne Auger", "Dimo Brockhoff", "Luka Opravš", "Tea Tušar"], + link={"type": "arxiv", "url": "https://arxiv.org/abs/2604.09131"}, + ) + ], + objectives={2}, + variables=[Variable(type="continuous", dim={"min": 1})], + implementations={"cobi_impl"}, + can_evaluate_objectives_independently="no", + constraints=[ + # FIXME: Check + Constraint(type="box", hard="yes", number={"min": 1}), + Constraint(type="linear", hard="yes", number={"min": 1}), + Constraint(type="function", hard="yes", number={"min": 1}), + ], + noise_type={"none"}, + dynamic_type=None, + allows_partial_evaluation="no", + modality={"multi-modal per objective"}, + fidelity_levels={1}, + source={"artificial"}, + code_examples={"./code_153.py"}, +) +library = Library(things) + +print(to_yaml_str(library)) diff --git a/examples/demo.py b/examples/demo.py new file mode 100644 index 0000000..0b866c2 --- /dev/null +++ b/examples/demo.py @@ -0,0 +1,35 @@ +from opltools import Suite, Problem, Library, Link, Variable, ValueRange +from pydantic_yaml import to_yaml_str +from opltools.schema import Implementation + +things = {} + +things["impl_py_cocoex"] = Implementation( + name="coco-experiment Python module", + description="Python bindings for the experiment part of the COCO framework", + language="python", + links=[ + Link(type="repository", url="https://github.com/numbbo/coco-experiment"), + Link(type="package", url="https://pypi.org/project/coco-experiment/"), + ], + evaluation_time="sub second", +) + +for fnr in range(1, 25): + id = f"fn_bbob_f{fnr}" + things[f"fn_bbob_f{fnr}"] = Problem( + name=f"BBOB F_{fnr}", + objectives={1}, + variables={Variable(type="continuous", dim=ValueRange(min=1, max=80))}, + implementations=["impl_py_cocoex"], + ) + +things["suite_bbob"] = Suite( + name="BBOB", + problems={f"fn_bbob_f{fnr}" for fnr in range(1, 25)}, + implementations=["impl_py_cocoex"], +) + +library = Library(things) + +print(to_yaml_str(library)) diff --git a/examples/emdo.py b/examples/emdo.py new file mode 100644 index 0000000..7a4504d --- /dev/null +++ b/examples/emdo.py @@ -0,0 +1,82 @@ +from opltools import Library, Problem, Implementation +from pydantic_yaml import to_yaml_str + +#! - name: Electric Motor Design Optimization +#! suite/generator/single: Single Problem +#! variable type: Continuous, Integer +#! dimensionality: '13' +#! objectives: '1' +#! constraints: 'yes' +#! dynamic: 'no' +#! noise: 'yes' +#! multimodal: 'yes' +#! multi-fidelity: 'no' +#! source (real-world/artificial): Real-World Application +#! implementation: Implementation not freely available +#! textual description: The goal is to find a design of a synchronous electric motor +#! for power steering systems that minimizes costs and satisfies all constraints. +#! reference: https://dis.ijs.si/tea/Publications/Tusar23Multistep.pdf (paper in Slovene) +#! other info: +#! partial evaluations: 'no' +#! full name: Electric Motor Design Optimization +#! constraint properties: Hard Constraints, Soft Constraints, Box Constraints +#! number of constraints: '12' +#! description of multimodality: Constraints are multimodal +#! key challenges / characteristics: Time-consuming solution evaluation, highly-constrained +#! problem +#! scientific motivation: Challenging to find good solutions in a limited time +#! limitations: 'Unavailability, even if available, it wouldn''t be helpful to use +#! for benchmarking due taking a long time to evaluate a single solution ' +#! implementation languages: Python +#! approximate evaluation time: 8 minutes +#! general: This is not an available problem, but could be interesting to show to +#! researchers which difficulties appear in real-world problems + +library = Library({ + "impl_emdo": Implementation( + name="Electric Motor Design Optimization", + description="Not publicly available", + language="python", + evaluation_time=["8 minutes"] + ), + "fn_emdo": Problem( + name="Electric Motor Design Optimization", + description="""# Goal +Find a design of a synchronous electric motor for power steering systems that minimizes costs and satisfies all constraints. + +# Motivation +Challenging to find good solutions in a limited time + +# Key Challenges +* Time-consuming solution evaluation, +* highly-constrained problem +* Constraints are multimodal + +This is not an available problem, but could be interesting to show to researchers which difficulties appear in real-world problems""", + objectives=[1], + variables=[ + {"type": "continuous", "dim": {"min": None, "max": 13}}, + {"type": "integer", "dim": {"min": None, "max": 13}}, + ], + modality=["multimodal"], + allows_partial_evaluation="no", + constraints=[ + {"type": "box", "hard": "some", "number": 12} + ], + dynamic_type=["no"], + noise_type=["yes"], + fidelity_levels=[1], + source=["real-world"], + references=[ + { + "title": "A Multi-Step Evaluation Process in Electric Motor Design", + "lang": "sj", + "authors": ["Tea Tušar", "Peter Korošec", "Bogdan Filipič"], + "link": {"url": "https://dis.ijs.si/tea/Publications/Tusar23Multistep.pdf"} + } + ], + implementations=["impl_emdo"] + ) +}) + +print(to_yaml_str(library)) diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..9be5ec9 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,37 @@ +[project] +name = "opltools" +version = "0.1.0" +description = "Tools to manage the Optimization Problem Library" +readme = "README.md" +authors = [ + { name = "Olaf Mersmann", email = "olafm@p-value.net" } +] +requires-python = ">=3.10" +dependencies = [ + "pydantic>=2.13.3", + "pydantic-yaml>=1.6.0", + "pyyaml>=6.0.3", +] + +[project.scripts] +opl = "opltools.cli:main" + +[project.optional-dependencies] +cli = [ + "rich>=15.0.0", +] + +[build-system] +requires = ["uv_build>=0.11.7,<0.12.0"] +build-backend = "uv_build" + +[dependency-groups] +dev = [ + "pytest>=9.0.3", + "pytest-cov>=7.1.0", + "ruff>=0.15.11", +] + +[tool.ruff] +# In addition to the standard set of exclusions, omit all tests, plus a specific file. +extend-exclude = ["utils/*.py"] diff --git a/src/opltools/__init__.py b/src/opltools/__init__.py new file mode 100644 index 0000000..b959bf9 --- /dev/null +++ b/src/opltools/__init__.py @@ -0,0 +1,27 @@ +from .schema import ( + Problem, + Suite, + Generator, + Implementation, + Library, + YesNoSome, + Link, + Reference, + Variable, + ValueRange, + Constraint, +) + +__all__ = [ + "Problem", + "Suite", + "Generator", + "Implementation", + "Library", + "YesNoSome", + "Link", + "Reference", + "Constraint", + "Variable", + "ValueRange", +] diff --git a/src/opltools/cli.py b/src/opltools/cli.py new file mode 100644 index 0000000..4a35d92 --- /dev/null +++ b/src/opltools/cli.py @@ -0,0 +1,46 @@ +import sys +import argparse +from pydantic import ValidationError +from pydantic_yaml import parse_yaml_raw_as + +from .schema import Library + + +def cmd_validate(args): + try: + with open(args.file) as f: + raw = f.read() + except OSError as e: + print(f"Error reading file: {e}", file=sys.stderr) + return 1 + + try: + parse_yaml_raw_as(Library, raw) + print(f"{args.file}: OK") + return 0 + except ValidationError as e: + for error in e.errors(): + loc = ( + " -> ".join(str(p) for p in error["loc"]) if error["loc"] else "(root)" + ) + print(f"{args.file}: {loc}: {error['msg']}") + return 1 + + +def main(): + parser = argparse.ArgumentParser(prog="opl", description="OPL tools") + subparsers = parser.add_subparsers(dest="command", required=True) + + validate_parser = subparsers.add_parser( + "validate", help="Validate a YAML file against the Library schema" + ) + validate_parser.add_argument("file", help="YAML file to validate") + + args = parser.parse_args() + + if args.command == "validate": + sys.exit(cmd_validate(args)) + + +if __name__ == "__main__": + main() diff --git a/src/opltools/py.typed b/src/opltools/py.typed new file mode 100644 index 0000000..e69de29 diff --git a/src/opltools/schema.py b/src/opltools/schema.py new file mode 100644 index 0000000..a2c5b5b --- /dev/null +++ b/src/opltools/schema.py @@ -0,0 +1,214 @@ +from enum import Enum +from typing import Any +from typing_extensions import Self +from pydantic import BaseModel, RootModel, ConfigDict, model_validator + +from .yesnosome import YesNoSome +from .utils import ValueRange, union_range + + +class OPLType(Enum): + problem = "problem" + suite = "suite" + generator = "generator" + implementation = "implementation" + + +class Link(BaseModel): + type: str | None = None + url: str + + def __hash__(self): + return hash(self.type) + hash(self.url) + + +class Thing(BaseModel): + type: OPLType + model_config = ConfigDict(extra="allow") + + +class Objectives(RootModel): + root: int | set[int] | ValueRange = 0 + + def union(self, other: Self) -> Self: + self.root = union_range(self.root, other.root) + return self + + +class VariableType(Enum): + continuous = "continuous" + integer = "integer" + binary = "binary" + categorical = "categorical" + unknown = "unknown" + + +class Variable(BaseModel): + type: VariableType = VariableType.unknown + dim: int | set[int] | ValueRange | None = 0 + + def __hash__(self): + if isinstance(self.dim, set): + dim_hash = hash(frozenset(self.dim)) + else: + dim_hash = hash(self.dim) + return hash(self.type) + dim_hash + + +class ConstraintType(Enum): + box = "box" + linear = "linear" + function = "function" + unknown = "unknown" + + +class Constraint(BaseModel): + type: ConstraintType = ConstraintType.unknown + hard: YesNoSome | None = None + equality: YesNoSome | None = None + number: int | set[int] | ValueRange | None = None + + def __hash__(self): + number = frozenset(self.number) if isinstance(self.number, set) else self.number + return hash((self.type, self.hard, self.equality, number)) + + +class Reference(BaseModel): + title: str | None = None + authors: list[str] | None = None + link: Link | None = None + + @model_validator(mode="after") + def _validate(self) -> Self: + if self.title is None and self.link is None: + raise ValueError("References must have either a title or a link.") + return self + + def __hash__(self): + return hash(self.title) + hash(self.link) + + +class Usage(BaseModel): + language: str + code: str + + +class Implementation(Thing): + type: OPLType = OPLType.implementation + name: str + description: str + links: list[Link] | None = None + language: str | None = None + evaluation_time: set[str] | None = None + requirements: str | list[str] | None = None + + +class ProblemLike(Thing): + name: str + long_name: str | None = None + description: str | None = None + tags: set[str] | None = None + references: set[Reference] | None = None + implementations: set[str] | None = None + objectives: set[int] | None = None + variables: set[Variable] | None = None + constraints: set[Constraint] | None = None + dynamic_type: set[str] | None = None + noise_type: set[str] | None = None + allows_partial_evaluation: YesNoSome | None = None + can_evaluate_objectives_independently: YesNoSome | None = None + modality: set[str] | None = None + fidelity_levels: set[int] | None = None + evaluation_time: set[str] | None = None + code_examples: set[str] | None = None + source: set[str] | None = None + + def __hash__(self): + return hash((self.type, self.name)) + + +class Problem(ProblemLike): + type: OPLType = OPLType.problem + instances: ValueRange | list[str] | None = None + + +class Suite(ProblemLike): + type: OPLType = OPLType.suite + problems: set[str] | None = None + + +class Generator(ProblemLike): + type: OPLType = OPLType.generator + + +class Library(RootModel): + root: dict[str, Problem | Generator | Suite | Implementation] = {} + + def _check_id_references(self, ids, type: OPLType) -> None: + for id in ids: + if id in self.root: + if self.root[id].type != type: + raise ValueError( + f"ID {id} is a {self.root[id].name}, expected a {type.name}" + ) + else: + raise ValueError(f"Missing {type.name} with id '{id}'") + + def _percolate_set(self, thing: Any, children: set | None, property: str): + """Propagate some `property` from child objects to the parent by calculating the union of all the child property sets. + + This is useful to propagate properties like `variables`, `constraints`, etc. from problems up to the suite. + """ + if children is None: + return + + if getattr(thing, property, None) is None: + setattr(thing, property, set()) + thing_set = getattr(thing, property) + + for child_id in children: + child = self.root[child_id] + child_set = getattr(child, property, None) + if child_set is not None: + thing_set.update(child_set) + + @model_validator(mode="after") + def _validate(self) -> Self: + # First check and fixup all problems + for id, thing in self.root.items(): + if isinstance(thing, Problem) and thing.implementations: + self._percolate_set(thing, thing.implementations, "evaluation_time") + + # Then check and fixup all suites because changes from the problems need to propagate to the suites + for id, thing in self.root.items(): + if isinstance(thing, Suite) and thing.problems: + for problem_id in thing.problems: + if problem_id not in self.root: + raise ValueError( + f"Suite {id} references problem with undefined id '{problem_id}'." + ) + if self.root[problem_id].type != OPLType.problem: + raise ValueError( + f"Suite {id} references problem with id '{problem_id}' but id is a {self.root[problem_id].type.name}." + ) + + self._percolate_set(thing, thing.problems, "fidelity_levels") + self._percolate_set(thing, thing.problems, "variables") + self._percolate_set(thing, thing.problems, "constraints") + self._percolate_set(thing, thing.problems, "evaluation_time") + + return self + + +__all__ = [ + "Constraint", + "Generator", + "Implementation", + "Library", + "Link", + "Problem", + "Reference", + "Suite", + "Variable", + "YesNoSome", +] diff --git a/src/opltools/utils.py b/src/opltools/utils.py new file mode 100644 index 0000000..a05a9b7 --- /dev/null +++ b/src/opltools/utils.py @@ -0,0 +1,63 @@ +from typing_extensions import Self +from pydantic import BaseModel, model_validator + + +class ValueRange(BaseModel): + min: int | None + max: int | None = None + + @model_validator(mode="after") + def _check(self) -> Self: + if self.min is None and self.max is None: + raise ValueError("Variable range should have at least a min or max value.") + return self + + def __hash__(self): + return hash((self.min, self.max)) + + +def _none_min(a, b): + if a and b: + return min(a, b) + elif a: + return a + else: + return b + + +def _none_max(a, b): + if a and b: + return max(a, b) + elif a: + return a + else: + return b + + +def union_range( + a: int | set[int] | ValueRange, b: int | set[int] | ValueRange +) -> int | set[int] | ValueRange: + if isinstance(a, int): + a = {a} + if isinstance(b, int): + b = {b} + + if isinstance(a, set) and isinstance(b, set): + res = a.union(b) + return res.pop() if len(res) == 1 else res + elif isinstance(a, ValueRange) and isinstance(b, ValueRange): + return ValueRange(min=_none_min(a.min, b.min), max=_none_max(a.max, b.max)) + + if isinstance(a, set): + a, b = b, a + if isinstance(a, ValueRange) and isinstance(b, set): + res = ValueRange(min=a.min, max=a.max) + if res.min: + for v in b: + res.min = min(v, res.min) + if res.max: + for v in b: + res.max = max(v, res.max) # + return res + + raise Exception("BAM") diff --git a/src/opltools/yesnosome.py b/src/opltools/yesnosome.py new file mode 100644 index 0000000..e10b24a --- /dev/null +++ b/src/opltools/yesnosome.py @@ -0,0 +1,28 @@ +from enum import Enum + + +class YesNoSome(Enum): + yes = "yes" + no = "no" + some = "some" + unknown = "?" + + +def union( + a: YesNoSome | set[YesNoSome], b: YesNoSome | set[YesNoSome] +) -> YesNoSome | set[YesNoSome]: + result = set() + if isinstance(a, YesNoSome): + result.add(a) + else: + result.update(a) + + if isinstance(b, YesNoSome): + result.add(b) + else: + result.update(b) + + if len(result) == 1: + return result.pop() + else: + return result diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/test_constraints.py b/tests/test_constraints.py new file mode 100644 index 0000000..782677e --- /dev/null +++ b/tests/test_constraints.py @@ -0,0 +1,17 @@ +from opltools.schema import Constraint, YesNoSome + + +class TestConstraint: + def test_default(self): + c = Constraint(type="box") + assert c.hard is None + assert c.equality is None + assert c.number is None + + def test_hard(self): + c = Constraint(type="box", hard="yes") + assert c.hard == YesNoSome.yes + + def test_number(self): + c = Constraint(type="linear", number=5) + assert c.number == 5 diff --git a/tests/test_generator.py b/tests/test_generator.py new file mode 100644 index 0000000..9d32ea0 --- /dev/null +++ b/tests/test_generator.py @@ -0,0 +1,7 @@ +from opltools.schema import Generator, OPLType + + +class TestGenerator: + def test_defaults(self): + g = Generator(name="G1") + assert g.type is OPLType.generator diff --git a/tests/test_implementation.py b/tests/test_implementation.py new file mode 100644 index 0000000..63a03e2 --- /dev/null +++ b/tests/test_implementation.py @@ -0,0 +1,31 @@ +from opltools.schema import Implementation, Link, OPLType + + +class TestImplementation: + def test_defaults(self): + impl = Implementation(name="impl1", description="An implementation") + assert impl.type is OPLType.implementation + assert impl.name == "impl1" + assert impl.description == "An implementation" + assert impl.links is None + assert impl.language is None + assert impl.requirements is None + + def test_full(self): + impl = Implementation( + name="impl1", + description="desc", + links=[Link(url="https://example.org")], + language="python", + evaluation_time=["fast"], + requirements=["numpy", "scipy"], + ) + assert impl.language == "python" + assert impl.requirements == ["numpy", "scipy"] + assert len(impl.links) == 1 + + def test_requirements_as_string(self): + impl = Implementation( + name="impl1", description="d", requirements="numpy" + ) + assert impl.requirements == "numpy" diff --git a/tests/test_library.py b/tests/test_library.py new file mode 100644 index 0000000..542bc7b --- /dev/null +++ b/tests/test_library.py @@ -0,0 +1,98 @@ +import pytest +from pydantic import ValidationError + +from opltools.schema import ( + Generator, + Implementation, + Library, + Problem, + Suite, +) + + +class TestLibrary: + def test_empty(self): + lib = Library(root={}) + assert lib.root == {} + + def test_single_problem(self): + lib = Library(root={"p1": Problem(name="P1")}) + assert "p1" in lib.root + assert isinstance(lib.root["p1"], Problem) + + def test_multiple_things(self): + lib = Library(root={ + "p1": Problem(name="P1"), + "p2": Problem(name="P2"), + "g1": Generator(name="G1"), + "s1": Suite(name="S1", problems={"p1", "p2"}), + "impl1": Implementation(name="impl1", description="d"), + }) + assert len(lib.root) == 5 + assert isinstance(lib.root["p1"], Problem) + assert isinstance(lib.root["g1"], Generator) + assert isinstance(lib.root["s1"], Suite) + assert isinstance(lib.root["impl1"], Implementation) + + def test_suite_references_missing_problem(self): + with pytest.raises(ValidationError, match="undefined id"): + Library(root={ + "s1": Suite(name="S1", problems={"does-not-exist"}), + }) + + def test_suite_references_non_problem(self): + with pytest.raises(ValidationError, match="but id is a"): + Library(root={ + "g1": Generator(name="G1"), + "s1": Suite(name="S1", problems={"g1"}), + }) + + def test_suite_with_no_problems_is_valid(self): + lib = Library(root={"s1": Suite(name="S1")}) + assert lib.root["s1"].problems is None + + def test_fixup_fidelity_populates_from_problems(self): + lib = Library(root={ + "p1": Problem(name="P1", fidelity_levels={1, 2}), + "p2": Problem(name="P2", fidelity_levels={2, 3}), + "s1": Suite(name="S1", problems={"p1", "p2"}), + }) + assert lib.root["s1"].fidelity_levels == {1, 2, 3} + + def test_fixup_fidelity_extends_existing(self): + lib = Library(root={ + "p1": Problem(name="P1", fidelity_levels={5}), + "s1": Suite(name="S1", problems={"p1"}, fidelity_levels={10}), + }) + assert lib.root["s1"].fidelity_levels == {5, 10} + + def test_fixup_fidelity_with_problems_without_levels(self): + lib = Library(root={ + "p1": Problem(name="P1"), + "p2": Problem(name="P2", fidelity_levels={7}), + "s1": Suite(name="S1", problems={"p1", "p2"}), + }) + assert lib.root["s1"].fidelity_levels == {7} + + def test_fixup_fidelity_all_problems_without_levels(self): + lib = Library(root={ + "p1": Problem(name="P1"), + "s1": Suite(name="S1", problems={"p1"}), + }) + assert lib.root["s1"].fidelity_levels == set() + + def test_fixup_evaluation_time_percolates_from_implementation_to_suite(self): + lib = Library(root={ + "impl1": Implementation( + name="impl1", description="d", evaluation_time={"fast"} + ), + "impl2": Implementation( + name="impl2", description="d", evaluation_time={"8 minutes"} + ), + "p1": Problem(name="P1", implementations={"impl1"}), + "p2": Problem(name="P2", implementations={"impl2"}), + "s1": Suite(name="S1", problems={"p1", "p2"}), + }) + assert lib.root["p1"].evaluation_time == {"fast"} + assert lib.root["p2"].evaluation_time == {"8 minutes"} + assert lib.root["s1"].evaluation_time == {"fast", "8 minutes"} diff --git a/tests/test_link.py b/tests/test_link.py new file mode 100644 index 0000000..6f8a31c --- /dev/null +++ b/tests/test_link.py @@ -0,0 +1,19 @@ +import pytest +from pydantic import ValidationError + +from opltools.schema import Link + + +class TestLink: + def test_minimal(self): + link = Link(url="https://example.org") + assert link.url == "https://example.org" + assert link.type is None + + def test_with_type(self): + link = Link(type="homepage", url="https://example.org") + assert link.type == "homepage" + + def test_url_required(self): + with pytest.raises(ValidationError): + Link() diff --git a/tests/test_objectives.py b/tests/test_objectives.py new file mode 100644 index 0000000..944404d --- /dev/null +++ b/tests/test_objectives.py @@ -0,0 +1,31 @@ +from opltools.schema import Objectives +from opltools.utils import ValueRange + + +class TestObjectives: + def test_default(self): + obj = Objectives() + assert obj.root == 0 + + def test_int(self): + assert Objectives(root=3).root == 3 + + def test_set(self): + assert Objectives(root={1, 2, 3}).root == {1, 2, 3} + + def test_range(self): + obj = Objectives(root=ValueRange(min=1, max=5)) + assert obj.root.min == 1 + assert obj.root.max == 5 + + def test_union_ints(self): + a = Objectives(root=1) + b = Objectives(root=2) + a.union(b) + assert a.root == {1, 2} + + def test_union_same_int(self): + a = Objectives(root=1) + b = Objectives(root=1) + a.union(b) + assert a.root == 1 diff --git a/tests/test_opltype.py b/tests/test_opltype.py new file mode 100644 index 0000000..db42057 --- /dev/null +++ b/tests/test_opltype.py @@ -0,0 +1,15 @@ +import pytest + +from opltools.schema import OPLType + + +class TestOPLType: + def test_from_string(self): + assert OPLType("problem") is OPLType.problem + assert OPLType("implementation") is OPLType.implementation + assert OPLType("suite") is OPLType.suite + assert OPLType("generator") is OPLType.generator + + def test_bad_string(self): + with pytest.raises(ValueError): + OPLType("foo") diff --git a/tests/test_problem.py b/tests/test_problem.py new file mode 100644 index 0000000..f3a9498 --- /dev/null +++ b/tests/test_problem.py @@ -0,0 +1,28 @@ +from opltools.schema import OPLType, Problem +from opltools.utils import ValueRange + + +class TestProblem: + def test_defaults(self): + p = Problem(name="P1") + assert p.type is OPLType.problem + assert p.name == "P1" + assert p.instances is None + + def test_with_tags_and_objectives(self): + p = Problem( + name="P1", + tags={"convex", "smooth"}, + objectives={1, 2}, + ) + assert p.tags == {"convex", "smooth"} + assert p.objectives == {1, 2} + + def test_instances_list(self): + p = Problem(name="P1", instances=["i1", "i2"]) + assert p.instances == ["i1", "i2"] + + def test_instances_range(self): + p = Problem(name="P1", instances=ValueRange(min=1, max=10)) + assert p.instances.min == 1 + assert p.instances.max == 10 diff --git a/tests/test_problemlike.py b/tests/test_problemlike.py new file mode 100644 index 0000000..9e6a4a6 --- /dev/null +++ b/tests/test_problemlike.py @@ -0,0 +1,26 @@ +import pytest +from pydantic import ValidationError + +from opltools.schema import Problem, ProblemLike, YesNoSome + + +class TestProblemLike: + def test_shared_fields(self): + p = Problem( + name="P1", + long_name="Problem 1", + description="desc", + tags={"convex", "smooth"}, + allows_partial_evaluation=YesNoSome.yes, + can_evaluate_objectives_independently=YesNoSome.no, + modality={"unimodal"}, + fidelity_levels={1, 2, 3}, + ) + assert p.long_name == "Problem 1" + assert p.tags == {"convex", "smooth"} + assert p.allows_partial_evaluation is YesNoSome.yes + assert p.fidelity_levels == {1, 2, 3} + + def test_problemlike_not_directly_useful_without_type(self): + with pytest.raises(ValidationError): + ProblemLike(name="X") diff --git a/tests/test_reference.py b/tests/test_reference.py new file mode 100644 index 0000000..0d388a6 --- /dev/null +++ b/tests/test_reference.py @@ -0,0 +1,28 @@ +import pytest +from pydantic import ValidationError + +from opltools.schema import Link, Reference + + +class TestReference: + def test_only_author(self): + ref = Reference(title="A paper") + assert ref.title == "A paper" + assert ref.authors is None + assert ref.link is None + + def test_only_link(self): + ref = Reference(link=Link(url="https://example.org")) + assert ref.link.url == "https://example.org" + + def test_full(self): + ref = Reference( + title="A paper", + authors=["Alice"], + link=Link(url="https://example.org"), + ) + assert ref.link.url == "https://example.org" + + def test_requires_title_or_link(self): + with pytest.raises(ValidationError): + Reference(authors=["A paper"]) diff --git a/tests/test_suite.py b/tests/test_suite.py new file mode 100644 index 0000000..ab686db --- /dev/null +++ b/tests/test_suite.py @@ -0,0 +1,12 @@ +from opltools.schema import OPLType, Suite + + +class TestSuite: + def test_defaults(self): + s = Suite(name="S1") + assert s.type is OPLType.suite + assert s.problems is None + + def test_with_problems(self): + s = Suite(name="S1", problems={"p1", "p2"}) + assert s.problems == {"p1", "p2"} diff --git a/tests/test_thing.py b/tests/test_thing.py new file mode 100644 index 0000000..e92f795 --- /dev/null +++ b/tests/test_thing.py @@ -0,0 +1,16 @@ +import pytest +from pydantic import ValidationError + +from opltools.schema import OPLType, Thing + + +class TestThing: + def test_type_required(self): + with pytest.raises(ValidationError): + Thing() + + def test_allows_extra_fields(self): + thing = Thing(type=OPLType.problem, something_extra="value", count=3) + assert thing.type is OPLType.problem + assert thing.something_extra == "value" + assert thing.count == 3 diff --git a/tests/test_union_range.py b/tests/test_union_range.py new file mode 100644 index 0000000..aff681c --- /dev/null +++ b/tests/test_union_range.py @@ -0,0 +1,61 @@ +from opltools.utils import ValueRange, union_range + + +class TestUnionRange: + def test_int_and_same_int(self): + assert union_range(3, 3) == 3 + + def test_int_and_different_int(self): + assert union_range(1, 2) == {1, 2} + + def test_int_and_set(self): + assert union_range(1, {2, 3}) == {1, 2, 3} + + def test_set_and_set(self): + assert union_range({1, 2}, {2, 3}) == {1, 2, 3} + + def test_set_collapses_to_int(self): + assert union_range({5}, {5}) == 5 + + def test_range_and_range(self): + a = ValueRange(min=1, max=5) + b = ValueRange(min=3, max=10) + result = union_range(a, b) + assert isinstance(result, ValueRange) + assert result.min == 1 + assert result.max == 10 + + def test_range_and_range_with_none_bounds(self): + a = ValueRange(min=1, max=None) + b = ValueRange(min=None, max=10) + result = union_range(a, b) + assert result.min == 1 + assert result.max == 10 + + def test_range_and_set_extends_max(self): + r = ValueRange(min=1, max=5) + result = union_range(r, {10}) + assert isinstance(result, ValueRange) + assert result.min == 1 + assert result.max == 10 + + def test_range_and_set_extends_min(self): + r = ValueRange(min=5, max=10) + result = union_range(r, {1}) + assert isinstance(result, ValueRange) + assert result.min == 1 + assert result.max == 10 + + def test_set_and_range_swapped(self): + r = ValueRange(min=5, max=10) + result = union_range({1}, r) + assert isinstance(result, ValueRange) + assert result.min == 1 + assert result.max == 10 + + def test_int_and_range(self): + r = ValueRange(min=5, max=10) + result = union_range(1, r) + assert isinstance(result, ValueRange) + assert result.min == 1 + assert result.max == 10 diff --git a/tests/test_usage.py b/tests/test_usage.py new file mode 100644 index 0000000..2073f93 --- /dev/null +++ b/tests/test_usage.py @@ -0,0 +1,15 @@ +import pytest +from pydantic import ValidationError + +from opltools.schema import Usage + + +class TestUsage: + def test_basic(self): + u = Usage(language="python", code="print('hi')") + assert u.language == "python" + assert u.code == "print('hi')" + + def test_requires_fields(self): + with pytest.raises(ValidationError): + Usage(language="python") diff --git a/tests/test_valuerange.py b/tests/test_valuerange.py new file mode 100644 index 0000000..19729b6 --- /dev/null +++ b/tests/test_valuerange.py @@ -0,0 +1,25 @@ +import pytest +from pydantic import ValidationError + +from opltools.utils import ValueRange + + +class TestValueRange: + def test_valid(self): + r = ValueRange(min=1, max=10) + assert r.min == 1 + assert r.max == 10 + + def test_min_only(self): + r = ValueRange(min=1, max=None) + assert r.min == 1 + assert r.max is None + + def test_max_only(self): + r = ValueRange(min=None, max=10) + assert r.min is None + assert r.max == 10 + + def test_both_none_rejected(self): + with pytest.raises(ValidationError, match="at least a min or max"): + ValueRange(min=None, max=None) diff --git a/tests/test_variables.py b/tests/test_variables.py new file mode 100644 index 0000000..1345655 --- /dev/null +++ b/tests/test_variables.py @@ -0,0 +1,23 @@ +from opltools.schema import Variable, VariableType +from opltools.utils import ValueRange + + +class TestVariable: + def test_defaults(self): + v = Variable() + assert v.type is VariableType.unknown + assert v.dim == 0 + + def test_explicit_values(self): + v = Variable(type="continuous", dim=5) + assert v.type is VariableType.continuous + assert v.dim == 5 + + def test_range_dim(self): + v = Variable(type="integer", dim=ValueRange(min=1, max=10)) + assert v.dim.min == 1 + assert v.dim.max == 10 + + def test_set_dim(self): + v = Variable(type="binary", dim={2, 4}) + assert v.dim == {2, 4} diff --git a/tests/test_yesnosome.py b/tests/test_yesnosome.py new file mode 100644 index 0000000..7667cd4 --- /dev/null +++ b/tests/test_yesnosome.py @@ -0,0 +1,39 @@ +import pytest + +from opltools.schema import YesNoSome +from opltools.yesnosome import union + + +class TestYesNoSome: + def test_from_string(self): + assert YesNoSome("yes") == YesNoSome.yes + assert YesNoSome("no") == YesNoSome.no + assert YesNoSome("some") == YesNoSome.some + assert YesNoSome("?") == YesNoSome.unknown + + def test_bad_string(self): + with pytest.raises(ValueError): + YesNoSome("foo") + + +class TestUnion: + def test_same_single(self): + assert union(YesNoSome.yes, YesNoSome.yes) == YesNoSome.yes + + def test_different_singles(self): + assert union(YesNoSome.yes, YesNoSome.no) == {YesNoSome.yes, YesNoSome.no} + + def test_single_and_set(self): + result = union(YesNoSome.yes, {YesNoSome.no, YesNoSome.some}) + assert result == {YesNoSome.yes, YesNoSome.no, YesNoSome.some} + + def test_set_and_single(self): + result = union({YesNoSome.some}, YesNoSome.yes) + assert result == {YesNoSome.yes, YesNoSome.some} + + def test_set_and_set(self): + result = union({YesNoSome.yes, YesNoSome.no}, {YesNoSome.no, YesNoSome.some}) + assert result == {YesNoSome.yes, YesNoSome.no, YesNoSome.some} + + def test_set_collapses_to_single(self): + assert union({YesNoSome.yes}, {YesNoSome.yes}) == YesNoSome.yes diff --git a/uv.lock b/uv.lock new file mode 100644 index 0000000..9850ab7 --- /dev/null +++ b/uv.lock @@ -0,0 +1,670 @@ +version = 1 +revision = 3 +requires-python = ">=3.10" + 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