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BridgeDb-Version 1
BridgeDb-Version 2
README.md

README.md

BridgeDb service to allow mapping gene and protein identifiers.

There will be multiple versions of this docker image:

Version 1 (docker image tag: orn-v1) currently contains identifier mappings for Homo sapiens, Mus musculus and Rattus norvegicus, but will be updated to a full BridgeDb image with all identifier mapping files.

Version 2 (tag: orn-v2) contains identifier mappings for Homo sapiens, Mus musculus and Rattus norvegicus, as well as metabolite identifier mappings. This will be the lighter version of the image with only the identifiers of the most used organisms. It also has configurations for resource limits, and readiness and liveness probes.

Deploying

To deploy:

$ ./bridgedb-deploy.sh 
deploymentconfig "bridgedb" created
service "bridgedb" created
route "bridgedb-app" created
route "bridgedb-swagger" created

The image tag to be used can be specified with the IMAGE_TAG parameter.

The base hostname that is used can be specified with the ROUTES_BASENAME parameter that is determined by the $OS_ROUTES_BASENAME environment variable that is automatically sourced from the file ../setenv.sh.

To undeploy:

$ ./bridgedb-undeploy.sh 
deploymentconfig "bridgedb" deleted
route "bridgedb-app" deleted
route "bridgedb-swagger" deleted
service "bridgedb" deleted