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Convert more single compartment cell models of Pospischil et al. 2008 #6

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pgleeson opened this Issue Mar 9, 2015 · 4 comments

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pgleeson commented Mar 9, 2015

Brief description

The conversion of cell models from Minimal Hodgkin–Huxley type models for different classes of cortical and thalamic neurons, Martin Pospischil, Maria Toledo-Rodriguez, Cyril Monier, Zuzanna Piwkowska, Thierry Bal, Yves Frégnac, Henry Markram and Alain Destexhe, Biological Cybernetics, 2008 requires more work.

See https://github.com/OpenSourceBrain/PospischilEtAl2008

Expected result

Reproducing most of the figures in the paper with models in pure NeuroML2.

Suggested steps

Note: there has been progress converting this model to ChannelML and using it in a neuroConstruct project. However, working on expressing the channels and cells in NeuroML2 and developing LEMS models to run these (and potentially pyNeuroML scripts to generate FI curves) should be more productive in the short term.

Possible extensions

More details to be added...

Knowledge prerequisites

NeuroML2/LEMS

To be learned

Conductance based modelling of cortical cells

Mentor

Contact p.gleeson -at- ucl.ac.uk if you are interested in contributing to this task

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pgleeson May 18, 2015

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@JustasB will work on this.

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pgleeson commented May 18, 2015

@JustasB will work on this.

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JustasB May 26, 2015

@pgleeson While we're waiting on Victoria for the PinskyRinsel model, I would like to start working on this model. Will you please add additional detail to this issue?

JustasB commented May 26, 2015

@pgleeson While we're waiting on Victoria for the PinskyRinsel model, I would like to start working on this model. Will you please add additional detail to this issue?

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JustasB Jul 16, 2015

RS and FS cells implemented here: OpenSourceBrain/PospischilEtAl2008#4

JustasB commented Jul 16, 2015

RS and FS cells implemented here: OpenSourceBrain/PospischilEtAl2008#4

@pgleeson pgleeson added the In progress label Sep 4, 2015

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pgleeson Sep 4, 2015

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More details on the current status of this can be found in the issues list for the project

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pgleeson commented Sep 4, 2015

More details on the current status of this can be found in the issues list for the project

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