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  1. opentree Public

    Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

    JavaScript 98 21

  2. make-based supertree pipeline

    Python 6 3

  3. peyotl Public

    python library for interacting with Open Tree of Life resources

    Jupyter Notebook 11 6

  4. API access to Open Tree of Life treestore

    Python 8 4

  5. Organization page with description of repositories:

    HTML 7 1

  6. otcetera Public

    C++17 lib for parsing of trees from newick, nexson, and taxonomy.tsv formats; tree calculations and manipulations

    C++ 4 3

Repositories

  • chronosynth Public

    Match dates from chronograms in phylesystem to synthetic tree nodes

    Python 1 0 2 0 Updated Dec 8, 2021
  • opentree Public

    Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

    JavaScript 98 BSD-2-Clause 21 261 2 Updated Nov 29, 2021
  • phylesystem-1 Public

    doc store for the Open Tree of Life study curation API

    1 1 9 0 Updated Nov 18, 2021
  • collections-1 Public

    Tree collections

    0 2 0 0 Updated Nov 5, 2021
  • python-opentree Public

    Python package for working with Open Tree of Life webservices and artifacts. Importable as opentree

    Python 0 BSD-2-Clause 2 3 0 Updated Nov 3, 2021
  • otcetera Public

    C++17 lib for parsing of trees from newick, nexson, and taxonomy.tsv formats; tree calculations and manipulations

    C++ 4 3 30 1 Updated Nov 3, 2021
  • peyotl Public

    python library for interacting with Open Tree of Life resources

    Jupyter Notebook 11 BSD-2-Clause 6 28 0 Updated Oct 27, 2021
  • germinator Public

    miscellaneous scripts and data for concerns that span more than one of the Open Tree code repositories: integration tests, system statistics, etc.

    Python 20 BSD-2-Clause 5 39 2 Updated Oct 27, 2021
  • reference-taxonomy Public

    Open Tree Reference Taxonomy (OTT) tools

    Python 10 BSD-2-Clause 12 131 2 Updated Oct 27, 2021
  • phylesystem-0 Public

    Yet another testing repository. This one is full size for performance testing. But still temporary.

    2 3 2 0 Updated Oct 20, 2021

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