C++14 lib for parsing of trees from newick, nexson, and taxonomy.tsv formats; tree calculations and manipulations
Open Tree Reference Taxonomy (OTT) tools
doc store for the Open Tree of Life study curation API
opentree index using postgres and pyramid
ansible playbook for installation of OpenTree otindex
Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.
miscellaneous scripts and data for concerns that span more than one of the Open Tree code repositories: integration tests, system statistics, etc.
make-based supertree pipeline
Generate repeatable, data-driven, publication quality figures of trees.
Static content related to the project; the webroot for the files.opentreeoflife.org web site. The repo contains all of the smallish files: indexes, READMEs, and so on. Larger files such as taxonomies and synthetic trees on the web site but not in git.
Yet another testing repository. This one is full size for performance testing. But still temporary.
API access to Open Tree of Life treestore
Collections of trees from the OpenTree datastore.
Production data for taxonomic amendments API (peyotl)
python library for interacting with Open Tree of Life resources
Test data repository for Tree Illustrator
A collection of current (and past) server configuration files for opentree components
Styled publication of NeXML/NeXSON trees
Workshop/hackathon for interoperability across tree viewers
indexing service for the OpenTreeOfLife nexson repository
Source tree graph database
OpenTree / FuturePhy workshops
Test data for taxonomic amendments API (peyotl)
Organization page with description of repositories:
General Java classes for Open Tree of Life development with Neo4j
A phylesystem containing only studies that overlap Asterales.
phylogenetic study document storage used by Open Tree of Life
json-formatted specifications for unit testing frameworks