Pinned repositories

  1. opentree

    Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

    JavaScript 77 13

  2. reference-taxonomy

    Open Tree Reference Taxonomy (OTT) tools

    Python 2 11

  3. propinquity

    make-based supertree pipeline

    Python 2 2

  4. treemachine

    Source tree graph database

    Java 18 6

  5. phylesystem

    phylogenetic study document storage used by Open Tree of Life

    Python 15 5

  6. peyotl

    python library for interacting with Open Tree of Life resources

    Jupyter Notebook 9 6

  • C++14 lib for parsing of trees from newick, nexson, and taxonomy.tsv formats; tree calculations and manipulations

    C++ 2 4 Updated Apr 27, 2017
  • Open Tree Reference Taxonomy (OTT) tools

    Python 2 11 Updated Apr 27, 2017
  • doc store for the Open Tree of Life study curation API

    1 2 Updated Apr 27, 2017
  • Tree collections

    2 Updated Apr 25, 2017
  • opentree index using postgres and pyramid

    Python Updated Apr 25, 2017
  • ansible playbook for installation of OpenTree otindex

    Updated Apr 24, 2017
  • Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

    JavaScript 77 13 Updated Mar 30, 2017
  • miscellaneous scripts and data for concerns that span more than one of the Open Tree code repositories: integration tests, system statistics, etc.

    Shell 8 2 Updated Mar 25, 2017
  • taxonomy graphdb

    Java 7 4 Updated Mar 22, 2017
  • make-based supertree pipeline

    Python 2 2 Updated Mar 16, 2017
  • Generate repeatable, data-driven, publication quality figures of trees.

    Jupyter Notebook 6 3 Updated Mar 10, 2017
  • Static content related to the project; the webroot for the files.opentreeoflife.org web site. The repo contains all of the smallish files: indexes, READMEs, and so on. Larger files such as taxonomies and synthetic trees on the web site but not in git.

    HTML 1 Updated Mar 9, 2017
  • Yet another testing repository. This one is full size for performance testing. But still temporary.

    2 4 Updated Mar 3, 2017
  • API access to Open Tree of Life treestore

    Python 5 3 Updated Feb 23, 2017
  • Collections of trees from the OpenTree datastore.

    2 Updated Feb 22, 2017
  • Production data for taxonomic amendments API (peyotl)

    1 Updated Feb 22, 2017
  • python library for interacting with Open Tree of Life resources

    Jupyter Notebook 9 6 Updated Feb 4, 2017
  • Test data repository for Tree Illustrator

    Updated Jan 20, 2017
  • A collection of current (and past) server configuration files for opentree components

    Python 1 Updated Dec 15, 2016
  • Styled publication of NeXML/NeXSON trees

    Python 1 5 Updated Dec 8, 2016
  • Workshop/hackathon for interoperability across tree viewers

    1 1 Updated Nov 1, 2016
  • indexing service for the OpenTreeOfLife nexson repository

    Java 1 Updated Oct 31, 2016
  • Source tree graph database

    Java 18 6 Updated Oct 23, 2016
  • OpenTree / FuturePhy workshops

    1 3 Updated Oct 22, 2016
  • Test data for taxonomic amendments API (peyotl)

    2 Updated Oct 12, 2016
  • Organization page with description of repositories:

    CSS 4 1 Updated Jul 4, 2016
  • General Java classes for Open Tree of Life development with Neo4j

    Java 1 Updated Jun 23, 2016
  • A phylesystem containing only studies that overlap Asterales.

    1 Updated Feb 11, 2016
  • phylogenetic study document storage used by Open Tree of Life

    Python 15 5 Updated Feb 5, 2016
  • json-formatted specifications for unit testing frameworks

    1 3 Updated Feb 1, 2016