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Pinned repositories

  1. Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

    JavaScript 88 14

  2. make-based supertree pipeline

    Python 2 1

  3. python library for interacting with Open Tree of Life resources

    Jupyter Notebook 11 6

  4. API access to Open Tree of Life treestore

    Python 7 3

  5. Organization page with description of repositories:

    HTML 4 1

  6. C++14 lib for parsing of trees from newick, nexson, and taxonomy.tsv formats; tree calculations and manipulations

    C++ 3 3

  • ansible playbook for installation of OpenTree otindex

    1 BSD-2-Clause Updated Apr 21, 2019
  • Tree collections

    2 Updated Apr 20, 2019
  • API access to Open Tree of Life treestore

    Python 7 3 BSD-2-Clause Updated Apr 20, 2019
  • A collection of current (and past) server configuration files for opentree components

    Python 1 BSD-2-Clause Updated Apr 20, 2019
  • miscellaneous scripts and data for concerns that span more than one of the Open Tree code repositories: integration tests, system statistics, etc.

    Shell 14 3 BSD-2-Clause Updated Apr 20, 2019
  • C++14 lib for parsing of trees from newick, nexson, and taxonomy.tsv formats; tree calculations and manipulations

    C++ 3 3 Updated Apr 20, 2019
  • Organization page with description of repositories:

    HTML 4 1 BSD-2-Clause Updated Apr 19, 2019
  • Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

    JavaScript 88 14 BSD-2-Clause Updated Apr 17, 2019
  • doc store for the Open Tree of Life study curation API

    1 1 Updated Apr 13, 2019
  • Yet another testing repository. This one is full size for performance testing. But still temporary.

    2 3 Updated Apr 11, 2019
  • opentree index using postgres and pyramid

    Python BSD-2-Clause Updated Apr 11, 2019
  • standalone test of web services

    Python BSD-2-Clause Updated Apr 8, 2019
  • Open Tree Reference Taxonomy (OTT) tools

    Python 5 12 BSD-2-Clause Updated Mar 9, 2019
  • python library for interacting with Open Tree of Life resources

    Jupyter Notebook 11 6 BSD-2-Clause Updated Jan 29, 2019
  • Collections of trees from the OpenTree datastore.

    2 BSD-2-Clause Updated Jan 26, 2019
  • OpenTree Web-Services Wrapper

    Python Updated Dec 11, 2018
  • Python Updated Nov 28, 2018
  • Shell BSD-2-Clause Updated Oct 20, 2018
  • Production data for taxonomic amendments API (peyotl)

    1 2 Updated Aug 10, 2018
  • taxonomy graphdb

    Java 7 3 Updated Jul 10, 2018
  • Test data for taxonomic amendments API (peyotl)

    2 BSD-2-Clause Updated May 24, 2018
  • Generate repeatable, data-driven, publication quality figures of trees.

    Jupyter Notebook 7 3 BSD-2-Clause 1 issue needs help Updated Apr 13, 2018
  • Test data repository for Tree Illustrator

    BSD-2-Clause Updated Oct 19, 2017
  • Python bindings for OpenTree services

    Python 2 1 Updated Aug 25, 2017
  • Workshop/hackathon for interoperability across tree viewers

    1 2 Updated Jun 28, 2017
  • make-based supertree pipeline

    Python 2 1 BSD-2-Clause Updated May 5, 2017
  • Static content related to the project; the webroot for the files.opentreeoflife.org web site. The repo contains all of the smallish files: indexes, READMEs, and so on. Larger files such as taxonomies and synthetic trees on the web site but not in git.

    HTML 1 Updated Mar 10, 2017
  • indexing service for the OpenTreeOfLife nexson repository

    Java Updated Oct 31, 2016
  • Source tree graph database

    Java 17 5 Updated Oct 23, 2016
  • OpenTree / FuturePhy workshops

    1 4 Updated Oct 23, 2016
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