OpenTreeOfLife

doc store for the Open Tree of Life study curation API

Tree collections

Production data for taxonomic amendments API (peyotl)

miscellaneous scripts and data for concerns that span more than one of the Open Tree code repositories: integration tests, system statistics, etc.

A collection of current (and past) server configuration files for opentree components

OpenTree Web-Services Wrapper

standalone test of web services

Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

taxonomy graphdb

python library for interacting with Open Tree of Life resources

Organization page with description of repositories:

opentree index using postgres and pyramid

Open Tree Reference Taxonomy (OTT) tools

Yet another testing repository. This one is full size for performance testing. But still temporary.

Test data for taxonomic amendments API (peyotl)

Generate repeatable, data-driven, publication quality figures of trees.

C++14 lib for parsing of trees from newick, nexson, and taxonomy.tsv formats; tree calculations and manipulations

API access to Open Tree of Life treestore

Test data repository for Tree Illustrator

Collections of trees from the OpenTree datastore.

Python bindings for OpenTree services

Workshop/hackathon for interoperability across tree viewers

make-based supertree pipeline

ansible playbook for installation of OpenTree otindex

Static content related to the project; the webroot for the files.opentreeoflife.org web site. The repo contains all of the smallish files: indexes, READMEs, and so on. Larger files such as taxonomies and synthetic trees on the web site but not in git.

indexing service for the OpenTreeOfLife nexson repository

Source tree graph database

OpenTree / FuturePhy workshops