OpenTreeOfLife

Repositories

• phylesystem-1

  doc store for the Open Tree of Life study curation API
  1 1 11 0 Updated May 28, 2020

• phylesystem-api

  API access to Open Tree of Life treestore
  Python BSD-2-Clause 3 8 55 0 Updated May 28, 2020

• germinator

  miscellaneous scripts and data for concerns that span more than one of the Open Tree code repositories: integration tests, system statistics, etc.
  Python BSD-2-Clause 5 18 40 1 Updated May 28, 2020

• opentree

  Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.
  JavaScript BSD-2-Clause 19 91 251 0 Updated May 28, 2020

• test-ot-ws

  standalone test of web services
  Python BSD-2-Clause 0 0 4 0 Updated May 28, 2020

• ws_wrapper

  OpenTree Web-Services Wrapper
  Python 0 0 0 1 Updated May 28, 2020

• ot-ansible
  Shell BSD-2-Clause 0 0 0 0 Updated May 28, 2020

• deployed-systems

  A collection of current (and past) server configuration files for opentree components
  Python BSD-2-Clause 1 0 1 0 Updated May 27, 2020

• otcetera

  C++17 lib for parsing of trees from newick, nexson, and taxonomy.tsv formats; tree calculations and manipulations
  C++ 3 3 28 1 Updated May 26, 2020

• opentreeoflife.github.io

  Organization page with description of repositories:
  HTML BSD-2-Clause 1 4 0 0 Updated May 22, 2020

• peyotl

  python library for interacting with Open Tree of Life resources
  Jupyter Notebook BSD-2-Clause 6 11 28 0 Updated May 20, 2020

• python-opentree

  Python package for working with Open Tree of Life webservices and artifacts. Importable as opentree
  Python BSD-2-Clause 1 0 1 0 Updated May 19, 2020

• nexson

  python parsing of Open Tree of Life's NexSON format. Formerly a part of the peyotl package
  Python BSD-2-Clause 0 0 0 0 Updated May 19, 2020

• peyutil

  Simple "utility" functions for Open Tree of Life's python code. Formerly part of the peyotl package
  Python BSD-2-Clause 0 0 0 0 Updated May 18, 2020

• phylesystem-0

  Yet another testing repository. This one is full size for performance testing. But still temporary.
  3 2 2 0 Updated May 18, 2020

• treeviz-workshop-2017

  Workshop/hackathon for interoperability across tree viewers
  2 1 2 0 Updated May 15, 2020

• reference-taxonomy

  Open Tree Reference Taxonomy (OTT) tools
  Python BSD-2-Clause 12 8 124 1 Updated May 14, 2020

• propinquity

  make-based supertree pipeline
  Python BSD-2-Clause 1 4 14 0 Updated May 11, 2020

• otindex_ansible

  ansible playbook for installation of OpenTree otindex
  BSD-2-Clause 1 0 4 0 Updated May 7, 2020

• collections-1

  Tree collections
  2 0 0 0 Updated Apr 8, 2020

• test-python-opentree
  Python 0 0 0 0 Updated Mar 30, 2020

• collections-0

  Collections of trees from the OpenTree datastore.
  BSD-2-Clause 2 0 0 0 Updated Mar 5, 2020

• amendments-1

  Production data for taxonomic amendments API (peyotl)
  2 1 0 0 Updated Feb 24, 2020

• otindex

  opentree index using postgres and pyramid
  Python BSD-2-Clause 0 0 18 0 Updated Feb 4, 2020

• script-managed-trees
  Python 0 1 0 0 Updated Dec 11, 2019

• taxomachine

  taxonomy graphdb
  Java 4 6 24 1 Updated Nov 2, 2019

• amendments-0

  Test data for taxonomic amendments API (peyotl)
  BSD-2-Clause 2 0 0 0 Updated May 24, 2018

• tree-illustrator

  Generate repeatable, data-driven, publication quality figures of trees.
  Jupyter Notebook BSD-2-Clause 3 7 9 (1 issue needs help) 0 Updated Apr 13, 2018

• illustrations-0

  Test data repository for Tree Illustrator
  BSD-2-Clause 0 0 0 0 Updated Oct 18, 2017

• pyopentree

  Python bindings for OpenTree services
  Python 1 3 1 0 Updated Aug 25, 2017