OpenVnmrJ Version 3.2A

Updated September 23, 2024.

Release Notes

See the Notes.txt file for the release notes.

Compatibility

As a spectrometer host, OpenVnmrJ Version 3.2 is compatible with:

• RHEL: Version 8 and 9
• AlmaLinux: Version 8 and 9
• Ubuntu: Version 20, 22, and 24.

For data processing only, OpenVnmrJ Version 3.2 is also compatible with:

• MacOS: Versions 10.13 (High Sierra) to 15 (Sequoia).

OpenVnmrJ Version 3.2 will also run on a Windows 10 or 11 PC using the MicroSoft WSL2 package.

Download instructions

• For VNMRS and later systems download the OpenVnmrJ_3.2_DDR.zip file.
• For Mercury and Inova systems download the OpenVnmrJ_3.2_MI.zip file.
• For the native MacOS version download the OpenVnmrJ_3.2.pkg file.

A patch is available for compatibility with the Linux ARM architecture. Use the 3.2_LNX_ANY_500.ptc
patch file. See the 3.2_LNX_ANY_500.Readme file for details.

Installation

See the Install file for installation instructions.

Citation

This software may be cited as:

Dan Iverson. (September 23, 2024). OpenVnmrJ (Version 3.2). Zenodo. https://doi.org/10.5281/zenodo.13831022

OpenVnmrJ Version 3.1 A

Updated October 5, 2021.

Release Notes

See the Notes.txt file for the release notes.

Compatibility

As a spectrometer host, OpenVnmrJ Version 3.1 is compatible with:

• CentOS: Versions 7.5, 7.6, 7.7, 7.8, 7.9
• RHEL: Versions 8.4
• AlmaLinux: Version 8.4
• Ubuntu: Version 20.

For data processing only, OpenVnmrJ Version 3.1 is also compatible with:

• MacOS: Versions 10.13 (High Sierra) to 16.3 (Big Sur).

Download instructions

• For VNMRS and later systems download the OpenVnmrJ_3.1_DDR.zip file.
• For Mercury and Inova systems download the OpenVnmrJ_3.1_MI.zip file.
• For the native MacOS version download OpenVnmrJ_3.1.pkg file.

Installation

See the Install31 file for installation instructions.

Citation

This software may be cited as:

Dan Iverson. (October 5, 2021). OpenVnmrJ (Version 3.1). Zenodo. https://doi.org/10.5281/zenodo.5550489

OpenVnmrJ Version 2.1 A

OpenVnmrJ 2.1A

Updated January 21, 2020.

Release Notes

See the Notes.txt file for the release notes.

Compatibility

As a spectrometer host, OpenVnmrJ Version 2 is compatible with:

• RHEL/CentOS: Versions 6.8, 6.9, and 6.10
• RHEL/CentOS: Versions 7.5, 7.6, 7.7, 8.1, and 8.2

For data processing only, OpenVnmrJ Version 2 is also compatible with:

• Ubuntu: Versions 14, 16, 18, and 20.
• MacOS: Versions 10.10 (Yosemite) to 10.15 (Catalina).

Download instructions

• For VNMRS and later systems download the OpenVnmrJ_2.1_DDR.zip file.
• For Mercury and Inova systems download the OpenVnmrJ_2.1_MI.zip file.
• For the native MacOS version download OpenVnmrJ_2.1.pkg file.
• For use with CentOS 8, the ver81.zip file will also be needed.

Installation

See the Install2 file for installation instructions.

OpenVnmrJ 1.1A

Updated Tuesday September 27, 2016.

• This version of OpenVnmrJ is equal to VnmrJ 4.2A plus the 110 patch plus
  • On OS X: Compiles using clang and uses of dynamic libraries for pulse programs
  • Generates version information, including git SHA1
  • Autoproc was not removing entries from psgQ
  • qtune could fail on Mercury systems (any experiment with sw=1000 could fail!)
  • svfj macro used obsolete Linux command finger
  • Added 'next' option to atcmd
  • openvnmrj-utils was added as an application directory
    • ovjapps lists submitted applications
    • ovjsubmit allows an application directory to be submitted for sharing
  • extract for ChemPack is included
• Remember this should be tested on Mercury/Inova (the MI version) or VnmrS/DD2/Propulse
• Installation will be parallel with any existing VnmrJ 4.2 install–components from VnmrJ 4.2 are copied into OpenVnmrJ
• Do not delete your VnmrJ 4.2 install—Agilent service will not support this version
• This release was built on CentOS 6.8 using John Ryan's kickstarter CentOS image
  • This software should run on RHEL or CentOS 6.3 to 6.8dvdImageOVJMI
• Please file a bug report if you have any issues!

Pre-installation instructions

• OpenVnmrJ requires several .686 (32-bit) packages that are not installed by default
  • The installer will alert to you to missing packages, and make a script in /tmp/agilent_preinstall
  • You may start with John Ryan's CentOS Kickstarter image on http://spinsights.chem.agilent.com, but this requires a fresh install of CentOS 6.8
  • Select the version appropriate for your hardware
    • dvdImage_OpenVnmrJ_1.1A_DD2.tbz works on VnmrS, DD2, ProPulse, 400MR(DD2) consoles
    • dvdImage_OpenVnmrJ_1.1A_MI.tbz works on Mercury-VX and Inova consoles
  • For a CentOS/RHEL workstation use dvdImage_OpenVnmrJ_1.1A_DD2.tbz

Installation instructions

• For VNMRS and later systems download the "DDR" release and untar it to get a directory called dvdimageOVJ
  • tar jxf dvdImage_OpenVnmrJ_1.1A_DD2.tbz
  • cd dvdimageOVJ
  • ./load.nmr
• For Mercury and Inova systems download the "MI" release and untar it to get a directory called dvdimageOVJMI
  • tar jxf dvdImage_OpenVnmrJ_1.1A_MI.tbz
  • cd dvdimageOVJMI
  • ./load.nmr
• For the native MacOS version download OpenVnmrJ11A.pkg and use the standard MacOS package installer.

Switch between VnmrJ 4.2 and OpenVnmrJ 1.1A

Use John Ryan's script:
/vnmr/openvnmrj-utils/bin/switchVJ.sh