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Releases: OpenVnmrJ/OpenVnmrJ

OpenVnmrJ Version 3.1 A

05 Oct 17:01
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Updated October 5, 2021.

Release Notes

See the Notes.txt file for the release notes.

Compatibility

As a spectrometer host, OpenVnmrJ Version 3 is compatible with:

  • CentOS: Versions 7.5, 7.6, 7.7, 7.8, 7.9
  • RHEL: Versions 8.4
  • AlmaLinux: Version 8.4
  • Ubuntu: Version 20.

For data processing only, OpenVnmrJ Version 3 is also compatible with:

  • MacOS: Versions 10.13 (High Sierra) to 16.3 (Big Sur).

Download instructions

  • For VNMRS and later systems download the OpenVnmrJ_3.1_DDR.zip file.
  • For Mercury and Inova systems download the OpenVnmrJ_3.1_MI.zip file.
  • For the native MacOS version download OpenVnmrJ_3.1.pkg file.

Installation

See the Install file for installation instructions.

Citation

This software may be cited as:

Dan Iverson. (October 5, 2021). OpenVnmrJ (Version 3.1). Zenodo. https://doi.org/10.5281/zenodo.5550489

OpenVnmrJ Version 2.1 A

23 Jan 16:49
7b35641
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OpenVnmrJ 2.1A

Updated January 21, 2020.

Release Notes

See the Notes.txt file for the release notes.

Compatibility

As a spectrometer host, OpenVnmrJ Version 2 is compatible with:

  • RHEL/CentOS: Versions 6.8, 6.9, and 6.10
  • RHEL/CentOS: Versions 7.5, 7.6, 7.7, 8.1, and 8.2

For data processing only, OpenVnmrJ Version 2 is also compatible with:

  • Ubuntu: Versions 14, 16, 18, and 20.
  • MacOS: Versions 10.10 (Yosemite) to 10.15 (Catalina).

Download instructions

  • For VNMRS and later systems download the OpenVnmrJ_2.1_DDR.zip file.
  • For Mercury and Inova systems download the OpenVnmrJ_2.1_MI.zip file.
  • For the native MacOS version download OpenVnmrJ_2.1.pkg file.
  • For use with CentOS 8, the ver81.zip file will also be needed.

Installation

See the Install2 file for installation instructions.

OpenVnmrJ 1.1A

27 Sep 21:12
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Updated Tuesday September 27, 2016.

  • This version of OpenVnmrJ is equal to VnmrJ 4.2A plus the 110 patch plus
    • On OS X: Compiles using clang and uses of dynamic libraries for pulse programs
    • Generates version information, including git SHA1
    • Autoproc was not removing entries from psgQ
    • qtune could fail on Mercury systems (any experiment with sw=1000 could fail!)
    • svfj macro used obsolete Linux command finger
    • Added 'next' option to atcmd
    • openvnmrj-utils was added as an application directory
      • ovjapps lists submitted applications
      • ovjsubmit allows an application directory to be submitted for sharing
    • extract for ChemPack is included
  • Remember this should be tested on Mercury/Inova (the MI version) or VnmrS/DD2/Propulse
  • Installation will be parallel with any existing VnmrJ 4.2 install–components from VnmrJ 4.2 are copied into OpenVnmrJ
  • Do not delete your VnmrJ 4.2 install—Agilent service will not support this version
  • This release was built on CentOS 6.8 using John Ryan's kickstarter CentOS image
    • This software should run on RHEL or CentOS 6.3 to 6.8dvdImageOVJMI
  • Please file a bug report if you have any issues!

Pre-installation instructions

  • OpenVnmrJ requires several .686 (32-bit) packages that are not installed by default
    • The installer will alert to you to missing packages, and make a script in /tmp/agilent_preinstall
    • You may start with John Ryan's CentOS Kickstarter image on http://spinsights.chem.agilent.com, but this requires a fresh install of CentOS 6.8
    • Select the version appropriate for your hardware
      • dvdImage_OpenVnmrJ_1.1A_DD2.tbz works on VnmrS, DD2, ProPulse, 400MR(DD2) consoles
      • dvdImage_OpenVnmrJ_1.1A_MI.tbz works on Mercury-VX and Inova consoles
    • For a CentOS/RHEL workstation use dvdImage_OpenVnmrJ_1.1A_DD2.tbz

Installation instructions

  • For VNMRS and later systems download the "DDR" release and untar it to get a directory called dvdimageOVJ
    • tar jxf dvdImage_OpenVnmrJ_1.1A_DD2.tbz
    • cd dvdimageOVJ
    • ./load.nmr
  • For Mercury and Inova systems download the "MI" release and untar it to get a directory called dvdimageOVJMI
    • tar jxf dvdImage_OpenVnmrJ_1.1A_MI.tbz
    • cd dvdimageOVJMI
    • ./load.nmr
  • For the native MacOS version download OpenVnmrJ11A.pkg and use the standard MacOS package installer.

Switch between VnmrJ 4.2 and OpenVnmrJ 1.1A

Use John Ryan's script:
/vnmr/openvnmrj-utils/bin/switchVJ.sh